Gcaud1773.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1773.t1
Unique Name	Gcaud1773.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	280

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_837_length_17206_cov_4.413380	contig	NODE_837_length_17206_cov_4.413380:13543..14382 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D7FK87
Preferred name	YARS
PFAMs	tRNA-synt_1b,tRNA_bind
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00055,RC00523
KEGG ko	ko:K01866
KEGG Reaction	R02918
KEGG Pathway	ko00970,map00970
KEGG Module	M00359,M00360
GOs	GO:0000049,GO:0001664,GO:0002682,GO:0002685,GO:0002688,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004831,GO:0005102,GO:0005126,GO:0005153,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006437,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006915,GO:0006935,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009605,GO:0009966,GO:0009987,GO:0010467,GO:0010469,GO:0010646,GO:0010758,GO:0012501,GO:0016070,GO:0016604,GO:0016874,GO:0016875,GO:0017101,GO:0017102,GO:0019538,GO:0019752,GO:0023051,GO:0030334,GO:0030545,GO:0031974,GO:0031981,GO:0032101,GO:0032879,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034660,GO:0040011,GO:0040012,GO:0042056,GO:0042221,GO:0042330,GO:0042379,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045236,GO:0046483,GO:0048018,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0050918,GO:0050920,GO:0051270,GO:0051716,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0098772,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1905521,GO:2000145
Evalue	2.81e-51
EggNOG OGs	COG0143@1\|root,KOG2241@2759\|Eukaryota
EC	6.1.1.1
Description	tRNA binding
COG category	J
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1773	Gcaud1773	Gracilaria caudata M_176_S67 male	gene	NODE_837_length_17206_cov_4.413380 13543..14382 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1773.t1.start1	Gcaud1773.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_837_length_17206_cov_4.413380 13543..13545 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1773.t1.CDS1	Gcaud1773.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_837_length_17206_cov_4.413380 13543..14382 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1773.t1.exon1	Gcaud1773.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_837_length_17206_cov_4.413380 13543..14382 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1773.t1.stop1	Gcaud1773.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_837_length_17206_cov_4.413380 14380..14382 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1773.t1	Gcaud1773.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_837_length_17206_cov_4.413380 13543..14382 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_837_length_17206_cov_4.413380:13543..14382+
coding sequence from alignment at NODE_837_length_17206_cov_4.413380:13543..14382+

mRNA sequence

>Gcaud1773.t1 ID=Gcaud1773.t1|Name=Gcaud1773.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=280bp
MSNAGFIASTATALWRSSATKISTEAVGERMVSLVWSGRPSSAFTVLYAP
VGAKFRSRRVVAHPRVNLTGLRPGVPYEVRVTGDGFDSSTSFTTAATAQP
AGAVSKDGSSEELPMTEISRLEIRVGKIVECEKHPDADSLYVEKIDVGEE
ELRTIVSGLVKYVPVEKMIGRNVIVLCNLKPRAMRGVFSHGMLLCASNED
HTIVDPLSAPSEAPIGELITFDGHKSAPIDPSNRATKAFDRIAAGLKTNS
DGVAMFEDVPFLTSAGACFSPEKLVGSIS*

spliced messenger RNA

>Gcaud1773.t1 ID=Gcaud1773.t1|Name=Gcaud1773.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=840bp|location=Sequence derived from alignment at NODE_837_length_17206_cov_4.413380:13543..14382+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTAACGCGGGATTTATTGCTTCTACCGCAACTGCTTTGTGGCGGTC
ATCGGCAACCAAGATATCCACAGAAGCCGTCGGAGAGCGAATGGTTTCCC
TAGTGTGGTCAGGGAGACCAAGCAGTGCCTTCACAGTGCTGTACGCCCCA
GTCGGCGCTAAATTTCGATCTCGACGAGTTGTAGCTCACCCTCGTGTGAA
TCTTACTGGCTTACGACCAGGAGTGCCGTATGAAGTTCGTGTGACGGGGG
ATGGATTCGACTCGTCGACTTCGTTCACAACTGCTGCAACTGCACAACCT
GCTGGTGCAGTCAGTAAAGATGGAAGCTCAGAAGAACTGCCTATGACAGA
GATTTCTCGGCTTGAGATAAGAGTCGGCAAAATTGTCGAGTGTGAGAAGC
ATCCCGATGCTGATTCCCTCTATGTTGAGAAAATCGACGTTGGGGAGGAA
GAACTGCGTACTATCGTCTCTGGGCTTGTAAAGTACGTACCTGTGGAGAA
AATGATAGGCCGCAATGTGATCGTCTTGTGTAATTTGAAACCAAGAGCTA
TGCGAGGCGTGTTTAGTCATGGAATGCTTCTCTGCGCTTCGAACGAAGAT
CACACTATCGTAGACCCCTTGTCAGCCCCGAGTGAAGCACCAATTGGAGA
ACTAATCACATTTGATGGACATAAATCGGCCCCAATTGATCCAAGCAATA
GGGCGACGAAGGCATTTGACAGAATTGCGGCCGGTCTGAAAACCAACAGC
GACGGTGTAGCAATGTTTGAAGATGTCCCATTTTTGACTTCTGCTGGAGC
CTGCTTCTCACCGGAAAAGCTCGTTGGGTCCATATCTTAA

protein sequence of Gcaud1773.t1

>Gcaud1773.t1 ID=Gcaud1773.t1|Name=Gcaud1773.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=280bp
MSNAGFIASTATALWRSSATKISTEAVGERMVSLVWSGRPSSAFTVLYAP
VGAKFRSRRVVAHPRVNLTGLRPGVPYEVRVTGDGFDSSTSFTTAATAQP
AGAVSKDGSSEELPMTEISRLEIRVGKIVECEKHPDADSLYVEKIDVGEE
ELRTIVSGLVKYVPVEKMIGRNVIVLCNLKPRAMRGVFSHGMLLCASNED
HTIVDPLSAPSEAPIGELITFDGHKSAPIDPSNRATKAFDRIAAGLKTNS
DGVAMFEDVPFLTSAGACFSPEKLVGSIS*

mRNA from alignment at NODE_837_length_17206_cov_4.413380:13543..14382+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1773.t1 ID=Gcaud1773.t1|Name=Gcaud1773.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=840bp|location=Sequence derived from alignment at NODE_837_length_17206_cov_4.413380:13543..14382+ (Gracilaria caudata M_176_S67 male)
ATGAGTAACGCGGGATTTATTGCTTCTACCGCAACTGCTTTGTGGCGGTC
ATCGGCAACCAAGATATCCACAGAAGCCGTCGGAGAGCGAATGGTTTCCC
TAGTGTGGTCAGGGAGACCAAGCAGTGCCTTCACAGTGCTGTACGCCCCA
GTCGGCGCTAAATTTCGATCTCGACGAGTTGTAGCTCACCCTCGTGTGAA
TCTTACTGGCTTACGACCAGGAGTGCCGTATGAAGTTCGTGTGACGGGGG
ATGGATTCGACTCGTCGACTTCGTTCACAACTGCTGCAACTGCACAACCT
GCTGGTGCAGTCAGTAAAGATGGAAGCTCAGAAGAACTGCCTATGACAGA
GATTTCTCGGCTTGAGATAAGAGTCGGCAAAATTGTCGAGTGTGAGAAGC
ATCCCGATGCTGATTCCCTCTATGTTGAGAAAATCGACGTTGGGGAGGAA
GAACTGCGTACTATCGTCTCTGGGCTTGTAAAGTACGTACCTGTGGAGAA
AATGATAGGCCGCAATGTGATCGTCTTGTGTAATTTGAAACCAAGAGCTA
TGCGAGGCGTGTTTAGTCATGGAATGCTTCTCTGCGCTTCGAACGAAGAT
CACACTATCGTAGACCCCTTGTCAGCCCCGAGTGAAGCACCAATTGGAGA
ACTAATCACATTTGATGGACATAAATCGGCCCCAATTGATCCAAGCAATA
GGGCGACGAAGGCATTTGACAGAATTGCGGCCGGTCTGAAAACCAACAGC
GACGGTGTAGCAATGTTTGAAGATGTCCCATTTTTGACTTCTGCTGGAGC
CTGCTTCTCACCGGAAAAGCTCGTTGGGTCCATATCTTAA

Coding sequence (CDS) from alignment at NODE_837_length_17206_cov_4.413380:13543..14382+

>Gcaud1773.t1 ID=Gcaud1773.t1|Name=Gcaud1773.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=840bp|location=Sequence derived from alignment at NODE_837_length_17206_cov_4.413380:13543..14382+ (Gracilaria caudata M_176_S67 male)
ATGAGTAACGCGGGATTTATTGCTTCTACCGCAACTGCTTTGTGGCGGTC
ATCGGCAACCAAGATATCCACAGAAGCCGTCGGAGAGCGAATGGTTTCCC
TAGTGTGGTCAGGGAGACCAAGCAGTGCCTTCACAGTGCTGTACGCCCCA
GTCGGCGCTAAATTTCGATCTCGACGAGTTGTAGCTCACCCTCGTGTGAA
TCTTACTGGCTTACGACCAGGAGTGCCGTATGAAGTTCGTGTGACGGGGG
ATGGATTCGACTCGTCGACTTCGTTCACAACTGCTGCAACTGCACAACCT
GCTGGTGCAGTCAGTAAAGATGGAAGCTCAGAAGAACTGCCTATGACAGA
GATTTCTCGGCTTGAGATAAGAGTCGGCAAAATTGTCGAGTGTGAGAAGC
ATCCCGATGCTGATTCCCTCTATGTTGAGAAAATCGACGTTGGGGAGGAA
GAACTGCGTACTATCGTCTCTGGGCTTGTAAAGTACGTACCTGTGGAGAA
AATGATAGGCCGCAATGTGATCGTCTTGTGTAATTTGAAACCAAGAGCTA
TGCGAGGCGTGTTTAGTCATGGAATGCTTCTCTGCGCTTCGAACGAAGAT
CACACTATCGTAGACCCCTTGTCAGCCCCGAGTGAAGCACCAATTGGAGA
ACTAATCACATTTGATGGACATAAATCGGCCCCAATTGATCCAAGCAATA
GGGCGACGAAGGCATTTGACAGAATTGCGGCCGGTCTGAAAACCAACAGC
GACGGTGTAGCAATGTTTGAAGATGTCCCATTTTTGACTTCTGCTGGAGC
CTGCTTCTCACCGGAAAAGCTCGTTGGGTCCATATCTTAA