Gcaud1771.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1771.t1
Unique NameGcaud1771.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length242
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_837_length_17206_cov_4.413380contigNODE_837_length_17206_cov_4.413380:8361..9086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMS188CT
PFAMsCpn10
Max annot lvl2759|Eukaryota
KEGG koko:K04078
Evalue2.61e-51
EggNOG OGsCOG0234@1|root,KOG1641@2759|Eukaryota
Descriptionchaperone cofactor-dependent protein refolding
COG categoryO
BRITEko00000,ko03029,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1771Gcaud1771Gracilaria caudata M_176_S67 malegeneNODE_837_length_17206_cov_4.413380 8361..9086 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1771.t1.start1Gcaud1771.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_837_length_17206_cov_4.413380 8361..8363 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1771.t1.CDS1Gcaud1771.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_837_length_17206_cov_4.413380 8361..9086 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1771.t1.exon1Gcaud1771.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_837_length_17206_cov_4.413380 8361..9086 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1771.t1.stop1Gcaud1771.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_837_length_17206_cov_4.413380 9084..9086 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1771.t1Gcaud1771.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_837_length_17206_cov_4.413380 8361..9086 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1771.t1 ID=Gcaud1771.t1|Name=Gcaud1771.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=242bp
MHRVNLTFIAGAPLPTRANRRVNLVCRRPTMTAAAASHTLDGRTISGPLQ
PVGQNILVKVAESPDTTTGGLFLAASAKEKPTYGEAIEVGPGKYFPNGIQ
VPMNIEKGDYVLYGKYGGTDLDYDGEKHTIVTQDDILCKLENGEYSAAAV
HPVQDRLLVKVDEAPDETSSGIILSKTAKTKSTSGKIVAMGPGRFMENGQ
IEPLAFAVGETVYYGKYSGTDVEFGGEQYMMIRMADVYAKL*
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spliced messenger RNA

>Gcaud1771.t1 ID=Gcaud1771.t1|Name=Gcaud1771.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=726bp|location=Sequence derived from alignment at NODE_837_length_17206_cov_4.413380:8361..9086+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATAGAGTGAATCTGACATTCATAGCGGGCGCACCATTGCCAACACG
AGCCAATCGCCGCGTGAATCTGGTCTGTAGAAGACCAACAATGACTGCCG
CTGCGGCCTCACATACTTTGGACGGCAGGACAATCTCAGGCCCGTTGCAA
CCCGTTGGACAAAACATTCTCGTCAAGGTCGCAGAATCACCTGACACTAC
CACCGGTGGCCTATTTCTTGCCGCTTCGGCAAAGGAAAAGCCGACATATG
GTGAAGCGATTGAAGTCGGTCCGGGAAAGTATTTCCCCAACGGGATTCAA
GTGCCCATGAACATCGAGAAGGGAGATTATGTGTTGTATGGAAAGTATGG
TGGCACCGACCTTGATTATGACGGAGAGAAACACACTATTGTTACTCAAG
ACGACATTTTGTGCAAGCTGGAAAATGGCGAGTATTCTGCTGCTGCTGTG
CATCCTGTTCAGGACAGGTTGCTCGTCAAGGTCGATGAAGCTCCAGATGA
AACATCTTCTGGAATAATTTTGTCCAAAACAGCGAAGACAAAATCAACTT
CTGGTAAGATTGTTGCTATGGGTCCTGGACGCTTTATGGAGAACGGTCAA
ATTGAACCTCTTGCCTTTGCAGTTGGTGAAACTGTGTACTACGGAAAGTA
CAGTGGTACGGATGTCGAGTTTGGCGGAGAGCAGTACATGATGATTCGTA
TGGCAGATGTCTACGCTAAACTATAG
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protein sequence of Gcaud1771.t1

>Gcaud1771.t1 ID=Gcaud1771.t1|Name=Gcaud1771.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=242bp
MHRVNLTFIAGAPLPTRANRRVNLVCRRPTMTAAAASHTLDGRTISGPLQ
PVGQNILVKVAESPDTTTGGLFLAASAKEKPTYGEAIEVGPGKYFPNGIQ
VPMNIEKGDYVLYGKYGGTDLDYDGEKHTIVTQDDILCKLENGEYSAAAV
HPVQDRLLVKVDEAPDETSSGIILSKTAKTKSTSGKIVAMGPGRFMENGQ
IEPLAFAVGETVYYGKYSGTDVEFGGEQYMMIRMADVYAKL*
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mRNA from alignment at NODE_837_length_17206_cov_4.413380:8361..9086+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1771.t1 ID=Gcaud1771.t1|Name=Gcaud1771.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=726bp|location=Sequence derived from alignment at NODE_837_length_17206_cov_4.413380:8361..9086+ (Gracilaria caudata M_176_S67 male)
ATGCATAGAGTGAATCTGACATTCATAGCGGGCGCACCATTGCCAACACG
AGCCAATCGCCGCGTGAATCTGGTCTGTAGAAGACCAACAATGACTGCCG
CTGCGGCCTCACATACTTTGGACGGCAGGACAATCTCAGGCCCGTTGCAA
CCCGTTGGACAAAACATTCTCGTCAAGGTCGCAGAATCACCTGACACTAC
CACCGGTGGCCTATTTCTTGCCGCTTCGGCAAAGGAAAAGCCGACATATG
GTGAAGCGATTGAAGTCGGTCCGGGAAAGTATTTCCCCAACGGGATTCAA
GTGCCCATGAACATCGAGAAGGGAGATTATGTGTTGTATGGAAAGTATGG
TGGCACCGACCTTGATTATGACGGAGAGAAACACACTATTGTTACTCAAG
ACGACATTTTGTGCAAGCTGGAAAATGGCGAGTATTCTGCTGCTGCTGTG
CATCCTGTTCAGGACAGGTTGCTCGTCAAGGTCGATGAAGCTCCAGATGA
AACATCTTCTGGAATAATTTTGTCCAAAACAGCGAAGACAAAATCAACTT
CTGGTAAGATTGTTGCTATGGGTCCTGGACGCTTTATGGAGAACGGTCAA
ATTGAACCTCTTGCCTTTGCAGTTGGTGAAACTGTGTACTACGGAAAGTA
CAGTGGTACGGATGTCGAGTTTGGCGGAGAGCAGTACATGATGATTCGTA
TGGCAGATGTCTACGCTAAACTATAG
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Coding sequence (CDS) from alignment at NODE_837_length_17206_cov_4.413380:8361..9086+

>Gcaud1771.t1 ID=Gcaud1771.t1|Name=Gcaud1771.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=726bp|location=Sequence derived from alignment at NODE_837_length_17206_cov_4.413380:8361..9086+ (Gracilaria caudata M_176_S67 male)
ATGCATAGAGTGAATCTGACATTCATAGCGGGCGCACCATTGCCAACACG
AGCCAATCGCCGCGTGAATCTGGTCTGTAGAAGACCAACAATGACTGCCG
CTGCGGCCTCACATACTTTGGACGGCAGGACAATCTCAGGCCCGTTGCAA
CCCGTTGGACAAAACATTCTCGTCAAGGTCGCAGAATCACCTGACACTAC
CACCGGTGGCCTATTTCTTGCCGCTTCGGCAAAGGAAAAGCCGACATATG
GTGAAGCGATTGAAGTCGGTCCGGGAAAGTATTTCCCCAACGGGATTCAA
GTGCCCATGAACATCGAGAAGGGAGATTATGTGTTGTATGGAAAGTATGG
TGGCACCGACCTTGATTATGACGGAGAGAAACACACTATTGTTACTCAAG
ACGACATTTTGTGCAAGCTGGAAAATGGCGAGTATTCTGCTGCTGCTGTG
CATCCTGTTCAGGACAGGTTGCTCGTCAAGGTCGATGAAGCTCCAGATGA
AACATCTTCTGGAATAATTTTGTCCAAAACAGCGAAGACAAAATCAACTT
CTGGTAAGATTGTTGCTATGGGTCCTGGACGCTTTATGGAGAACGGTCAA
ATTGAACCTCTTGCCTTTGCAGTTGGTGAAACTGTGTACTACGGAAAGTA
CAGTGGTACGGATGTCGAGTTTGGCGGAGAGCAGTACATGATGATTCGTA
TGGCAGATGTCTACGCTAAACTATAG
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