Gcaud1764.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1764.t1
Unique Name	Gcaud1764.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	274

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2664_length_5018_cov_3.423584	contig	NODE_2664_length_5018_cov_3.423584:1322..2143 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1385935.N836_27360
PFAMs	CCB1
Max annot lvl	1117\|Cyanobacteria
Evalue	3.06e-12
EggNOG OGs	2AZTV@1\|root,31S34@2\|Bacteria,1G63F@1117\|Cyanobacteria,1HAMB@1150\|Oscillatoriales
Description	Cofactor assembly of complex C subunit B
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1764	Gcaud1764	Gracilaria caudata M_176_S67 male	gene	NODE_2664_length_5018_cov_3.423584 1322..2143 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1764.t1.stop1	Gcaud1764.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2664_length_5018_cov_3.423584 1322..1324 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1764.t1.CDS1	Gcaud1764.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2664_length_5018_cov_3.423584 1322..2143 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1764.t1.exon1	Gcaud1764.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2664_length_5018_cov_3.423584 1322..2143 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1764.t1.start1	Gcaud1764.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2664_length_5018_cov_3.423584 2141..2143 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1764.t1	Gcaud1764.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2664_length_5018_cov_3.423584 1322..2143 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2664_length_5018_cov_3.423584:1322..2143-
coding sequence from alignment at NODE_2664_length_5018_cov_3.423584:1322..2143-

mRNA sequence

>Gcaud1764.t1 ID=Gcaud1764.t1|Name=Gcaud1764.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=274bp
MFAFAAPFAPCSLRRAPIAAPSLRTRLARTARHAAPRPSRAPRMSLTPPP
PPPPPEALCALLLSDISTVNQNSLFATAFVFFLTFWGAISFVKGSTKARI
TQASFTLQQSPSDIAKKTARYLMERSFVADPEKDSRAGVMTFTGKVRASS
SVASILVAVAASGLWSLTYILNFILPTQYQSPYWNLLTLLAFAVVPWYWN
AASRTEEVKVMVEEEEQGSTLYVKGHRDEIEQLEKAFNWKRNAPVYEGDE
QQQEQQQPQQQQAEAPNESVTSR*

spliced messenger RNA

>Gcaud1764.t1 ID=Gcaud1764.t1|Name=Gcaud1764.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=822bp|location=Sequence derived from alignment at NODE_2664_length_5018_cov_3.423584:1322..2143- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGCGTTCGCCGCTCCGTTTGCGCCTTGCTCCCTGCGTCGCGCCCC
CATCGCCGCGCCTTCGCTGCGCACCCGCCTCGCGCGCACAGCACGTCATG
CAGCCCCGCGCCCGTCGCGCGCGCCGCGCATGAGCCTGACGCCGCCGCCA
CCGCCGCCGCCGCCCGAGGCGCTGTGCGCGCTGCTGCTGAGCGACATCTC
CACCGTCAACCAGAACTCGTTGTTCGCCACCGCGTTTGTGTTTTTCCTCA
CCTTCTGGGGCGCCATCTCCTTCGTCAAGGGCTCCACCAAGGCGCGCATC
ACGCAGGCGTCGTTCACGCTGCAGCAGTCGCCGTCCGACATCGCCAAGAA
AACGGCGCGCTATCTGATGGAGCGCTCGTTTGTGGCCGACCCGGAGAAGG
ACTCGCGCGCGGGCGTGATGACGTTCACGGGCAAGGTGCGCGCCAGTTCC
AGCGTGGCGAGCATTTTGGTGGCGGTGGCGGCGAGCGGGCTATGGTCGCT
GACGTACATTCTCAACTTCATCCTGCCCACACAGTACCAGAGCCCGTACT
GGAACTTGCTCACGCTGCTGGCGTTTGCCGTGGTGCCATGGTACTGGAAC
GCGGCGTCCAGAACGGAGGAGGTGAAGGTGATGGTTGAGGAGGAGGAACA
GGGCTCTACTCTGTACGTGAAGGGCCATCGTGATGAGATTGAACAGTTAG
AAAAAGCATTTAACTGGAAGCGAAATGCGCCGGTGTACGAGGGAGACGAG
CAGCAACAGGAGCAGCAGCAACCACAGCAACAACAAGCTGAAGCGCCCAA
CGAAAGCGTCACCTCACGCTGA

protein sequence of Gcaud1764.t1

>Gcaud1764.t1 ID=Gcaud1764.t1|Name=Gcaud1764.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=274bp
MFAFAAPFAPCSLRRAPIAAPSLRTRLARTARHAAPRPSRAPRMSLTPPP
PPPPPEALCALLLSDISTVNQNSLFATAFVFFLTFWGAISFVKGSTKARI
TQASFTLQQSPSDIAKKTARYLMERSFVADPEKDSRAGVMTFTGKVRASS
SVASILVAVAASGLWSLTYILNFILPTQYQSPYWNLLTLLAFAVVPWYWN
AASRTEEVKVMVEEEEQGSTLYVKGHRDEIEQLEKAFNWKRNAPVYEGDE
QQQEQQQPQQQQAEAPNESVTSR*

mRNA from alignment at NODE_2664_length_5018_cov_3.423584:1322..2143-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1764.t1 ID=Gcaud1764.t1|Name=Gcaud1764.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=822bp|location=Sequence derived from alignment at NODE_2664_length_5018_cov_3.423584:1322..2143- (Gracilaria caudata M_176_S67 male)
ATGTTCGCGTTCGCCGCTCCGTTTGCGCCTTGCTCCCTGCGTCGCGCCCC
CATCGCCGCGCCTTCGCTGCGCACCCGCCTCGCGCGCACAGCACGTCATG
CAGCCCCGCGCCCGTCGCGCGCGCCGCGCATGAGCCTGACGCCGCCGCCA
CCGCCGCCGCCGCCCGAGGCGCTGTGCGCGCTGCTGCTGAGCGACATCTC
CACCGTCAACCAGAACTCGTTGTTCGCCACCGCGTTTGTGTTTTTCCTCA
CCTTCTGGGGCGCCATCTCCTTCGTCAAGGGCTCCACCAAGGCGCGCATC
ACGCAGGCGTCGTTCACGCTGCAGCAGTCGCCGTCCGACATCGCCAAGAA
AACGGCGCGCTATCTGATGGAGCGCTCGTTTGTGGCCGACCCGGAGAAGG
ACTCGCGCGCGGGCGTGATGACGTTCACGGGCAAGGTGCGCGCCAGTTCC
AGCGTGGCGAGCATTTTGGTGGCGGTGGCGGCGAGCGGGCTATGGTCGCT
GACGTACATTCTCAACTTCATCCTGCCCACACAGTACCAGAGCCCGTACT
GGAACTTGCTCACGCTGCTGGCGTTTGCCGTGGTGCCATGGTACTGGAAC
GCGGCGTCCAGAACGGAGGAGGTGAAGGTGATGGTTGAGGAGGAGGAACA
GGGCTCTACTCTGTACGTGAAGGGCCATCGTGATGAGATTGAACAGTTAG
AAAAAGCATTTAACTGGAAGCGAAATGCGCCGGTGTACGAGGGAGACGAG
CAGCAACAGGAGCAGCAGCAACCACAGCAACAACAAGCTGAAGCGCCCAA
CGAAAGCGTCACCTCACGCTGA

Coding sequence (CDS) from alignment at NODE_2664_length_5018_cov_3.423584:1322..2143-

>Gcaud1764.t1 ID=Gcaud1764.t1|Name=Gcaud1764.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=822bp|location=Sequence derived from alignment at NODE_2664_length_5018_cov_3.423584:1322..2143- (Gracilaria caudata M_176_S67 male)
ATGTTCGCGTTCGCCGCTCCGTTTGCGCCTTGCTCCCTGCGTCGCGCCCC
CATCGCCGCGCCTTCGCTGCGCACCCGCCTCGCGCGCACAGCACGTCATG
CAGCCCCGCGCCCGTCGCGCGCGCCGCGCATGAGCCTGACGCCGCCGCCA
CCGCCGCCGCCGCCCGAGGCGCTGTGCGCGCTGCTGCTGAGCGACATCTC
CACCGTCAACCAGAACTCGTTGTTCGCCACCGCGTTTGTGTTTTTCCTCA
CCTTCTGGGGCGCCATCTCCTTCGTCAAGGGCTCCACCAAGGCGCGCATC
ACGCAGGCGTCGTTCACGCTGCAGCAGTCGCCGTCCGACATCGCCAAGAA
AACGGCGCGCTATCTGATGGAGCGCTCGTTTGTGGCCGACCCGGAGAAGG
ACTCGCGCGCGGGCGTGATGACGTTCACGGGCAAGGTGCGCGCCAGTTCC
AGCGTGGCGAGCATTTTGGTGGCGGTGGCGGCGAGCGGGCTATGGTCGCT
GACGTACATTCTCAACTTCATCCTGCCCACACAGTACCAGAGCCCGTACT
GGAACTTGCTCACGCTGCTGGCGTTTGCCGTGGTGCCATGGTACTGGAAC
GCGGCGTCCAGAACGGAGGAGGTGAAGGTGATGGTTGAGGAGGAGGAACA
GGGCTCTACTCTGTACGTGAAGGGCCATCGTGATGAGATTGAACAGTTAG
AAAAAGCATTTAACTGGAAGCGAAATGCGCCGGTGTACGAGGGAGACGAG
CAGCAACAGGAGCAGCAGCAACCACAGCAACAACAAGCTGAAGCGCCCAA
CGAAAGCGTCACCTCACGCTGA