Gcaud1763.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1763.t1
Unique Name	Gcaud1763.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	418

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2664_length_5018_cov_3.423584	contig	NODE_2664_length_5018_cov_3.423584:25..1278 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	554065.XP_005851716.1
PFAMs	DEAD,Helicase_C
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K13025
KEGG Pathway	ko03013,ko03015,ko03040,map03013,map03015,map03040
KEGG Module	M00430
Evalue	2.26e-175
EggNOG OGs	COG0513@1\|root,KOG0328@2759\|Eukaryota,37QGM@33090\|Viridiplantae,34GTX@3041\|Chlorophyta
EC	3.6.4.13
Description	Belongs to the DEAD box helicase family
COG category	J
BRITE	ko00000,ko00001,ko00002,ko01000,ko03009,ko03012,ko03019,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1763	Gcaud1763	Gracilaria caudata M_176_S67 male	gene	NODE_2664_length_5018_cov_3.423584 25..1278 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1763.t1.start1	Gcaud1763.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2664_length_5018_cov_3.423584 25..27 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1763.t1.CDS1	Gcaud1763.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2664_length_5018_cov_3.423584 25..1278 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1763.t1.exon1	Gcaud1763.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2664_length_5018_cov_3.423584 25..1278 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1763.t1.stop1	Gcaud1763.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2664_length_5018_cov_3.423584 1276..1278 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1763.t1	Gcaud1763.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2664_length_5018_cov_3.423584 25..1278 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2664_length_5018_cov_3.423584:25..1278+
coding sequence from alignment at NODE_2664_length_5018_cov_3.423584:25..1278+

mRNA sequence

>Gcaud1763.t1 ID=Gcaud1763.t1|Name=Gcaud1763.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=418bp
MSGIGSASPRYAPTSPTASDSTFTRRQAEKATFNINREVQVFKSFDDMPL
KAPLLRGIYSIGFDMPSAIQQRCIVPMIRGHDVVAQAQSGTGKTAMIAIV
ALQLASATAAHTQVLVLSPTRELAVQTHRNVELLGEFLCIGSHACVGGKK
VGDDIRRLANGGVHIVSGTPGRVYDMIQRNVLHTNKLRVLFIDEADEMLT
MGFKEQVYDIYRYAPPTVQVVLVSATLPSDVLEMSEKFMTQPISVLVKRD
GLSLDGIRQFYVDVEQEEWKFDTLCDLYETLTITQAVIFCNTRRKVEWLA
KKMKEGNFVVTAMHGDMKQKERDSVMDSFRAGDFRVLIATDVWSRGIDVQ
QVSLVINYDVPLQQESYLHRIGRSGRFGRKGVAITFARFSDKKEMSAIEK
FYGIRIRELPADVDKYL*

spliced messenger RNA

>Gcaud1763.t1 ID=Gcaud1763.t1|Name=Gcaud1763.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1254bp|location=Sequence derived from alignment at NODE_2664_length_5018_cov_3.423584:25..1278+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGGCATCGGAAGTGCGTCCccgcgctacgcgcccacctcccccac
cgcgtccgactccaccttcacgcgccgccAGGCCGAAAAGGCCACCTTCA
ACATCAACCGCGAGGTGCAGGTGTTCAAGAGCTTCGACGACATGCCGCTC
AAGGCGCCGCTGCTGCGCGGCATCTACTCCATCGGCTTCGACATGCCGTC
CGCCATCCAGCAGCGCTGCATCGTGCCCATGATTCGCGGCCACGACGTGG
TGGCGCAGGCGCAGAGCGGCACGGGCAAGACCGCCATGATTGCGATTGTG
GCGCTGCAACTGGCGTCCGCCACCGCGGCGCACACGCAGGTGCTTGTGCT
CAGCCCCACGCGCGAGCTCGCGGTGCAGACGCATCGTAACGTGGAGCTGT
TGGGCGAGTTTCTTTGCATTGGCTCGCACGCGTGTGTGGGCGGGAAGAAG
GTGGGTGATGATATCCGACGTCTGGCGAATGGCGGCGTGCACATTGTGAG
CGGAACGCCGGGTCGGGTGTACGATATGATTCAACGCAATGTGCTGCACA
CAAACAAGTTGCGCGTGTTGTTCATTGATGAGGCGGATGAGATGCTCACC
ATGGGCTTCAAGGAACAGGTGTACGATATCTATCGATATGCGCCGCCCAC
CGTGCAGGTGGTGCTTGTGTCGGCCACGCTGCCGTCCGATGTGTTGGAGA
TGAGCGAGAAGTTCATGACGCAGCCCATCTCCGTGTTGGTGAAGCGTGAC
GGGCTCAGTCTGGACGGCATTCGGCAGTTTTACGTGGACGTGGAGCAGGA
GGAGTGGAAGTTTGACACGCTGTGCGACCTGTACGAGACGCTCACCATCA
CGCAGGCAGTCATTTTCTGCAACACGCGACGAAAAGTGGAGTGGCTTGCA
AAGAAGATGAAGGAGGGCAACTTTGTGGTCACCGCTATGCACGGCGACAT
GAAACAGAAGGAGCGTGACTCGGTGATGGACTCGTTCCGCGCGGGCGACT
TCCGCGTGCTGATTGCCACCGACGTGTGGTCGAGAGGCATTGATGTGCAG
CAGGTGAGCCTGGTGATCAACTACGACGTGCCGCTGCAACAGGAATCGTA
TCTGCATCGCATCGGACGCAGCGGGCGCTTCGGCAGAAAGGGTGTGGCCA
TCACGTTTGCGCGCTTCTCGGACAAGAAGGAAATGAGCGCGATCGAGAAG
TTCTACGGAATCCGGATACGAGAGTTGCCCGCGGACGTGGACAAGTATCT
GTGA

protein sequence of Gcaud1763.t1

>Gcaud1763.t1 ID=Gcaud1763.t1|Name=Gcaud1763.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=418bp
MSGIGSASPRYAPTSPTASDSTFTRRQAEKATFNINREVQVFKSFDDMPL
KAPLLRGIYSIGFDMPSAIQQRCIVPMIRGHDVVAQAQSGTGKTAMIAIV
ALQLASATAAHTQVLVLSPTRELAVQTHRNVELLGEFLCIGSHACVGGKK
VGDDIRRLANGGVHIVSGTPGRVYDMIQRNVLHTNKLRVLFIDEADEMLT
MGFKEQVYDIYRYAPPTVQVVLVSATLPSDVLEMSEKFMTQPISVLVKRD
GLSLDGIRQFYVDVEQEEWKFDTLCDLYETLTITQAVIFCNTRRKVEWLA
KKMKEGNFVVTAMHGDMKQKERDSVMDSFRAGDFRVLIATDVWSRGIDVQ
QVSLVINYDVPLQQESYLHRIGRSGRFGRKGVAITFARFSDKKEMSAIEK
FYGIRIRELPADVDKYL*

mRNA from alignment at NODE_2664_length_5018_cov_3.423584:25..1278+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1763.t1 ID=Gcaud1763.t1|Name=Gcaud1763.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1254bp|location=Sequence derived from alignment at NODE_2664_length_5018_cov_3.423584:25..1278+ (Gracilaria caudata M_176_S67 male)
ATGTCCGGCATCGGAAGTGCGTCCccgcgctacgcgcccacctcccccac
cgcgtccgactccaccttcacgcgccgccAGGCCGAAAAGGCCACCTTCA
ACATCAACCGCGAGGTGCAGGTGTTCAAGAGCTTCGACGACATGCCGCTC
AAGGCGCCGCTGCTGCGCGGCATCTACTCCATCGGCTTCGACATGCCGTC
CGCCATCCAGCAGCGCTGCATCGTGCCCATGATTCGCGGCCACGACGTGG
TGGCGCAGGCGCAGAGCGGCACGGGCAAGACCGCCATGATTGCGATTGTG
GCGCTGCAACTGGCGTCCGCCACCGCGGCGCACACGCAGGTGCTTGTGCT
CAGCCCCACGCGCGAGCTCGCGGTGCAGACGCATCGTAACGTGGAGCTGT
TGGGCGAGTTTCTTTGCATTGGCTCGCACGCGTGTGTGGGCGGGAAGAAG
GTGGGTGATGATATCCGACGTCTGGCGAATGGCGGCGTGCACATTGTGAG
CGGAACGCCGGGTCGGGTGTACGATATGATTCAACGCAATGTGCTGCACA
CAAACAAGTTGCGCGTGTTGTTCATTGATGAGGCGGATGAGATGCTCACC
ATGGGCTTCAAGGAACAGGTGTACGATATCTATCGATATGCGCCGCCCAC
CGTGCAGGTGGTGCTTGTGTCGGCCACGCTGCCGTCCGATGTGTTGGAGA
TGAGCGAGAAGTTCATGACGCAGCCCATCTCCGTGTTGGTGAAGCGTGAC
GGGCTCAGTCTGGACGGCATTCGGCAGTTTTACGTGGACGTGGAGCAGGA
GGAGTGGAAGTTTGACACGCTGTGCGACCTGTACGAGACGCTCACCATCA
CGCAGGCAGTCATTTTCTGCAACACGCGACGAAAAGTGGAGTGGCTTGCA
AAGAAGATGAAGGAGGGCAACTTTGTGGTCACCGCTATGCACGGCGACAT
GAAACAGAAGGAGCGTGACTCGGTGATGGACTCGTTCCGCGCGGGCGACT
TCCGCGTGCTGATTGCCACCGACGTGTGGTCGAGAGGCATTGATGTGCAG
CAGGTGAGCCTGGTGATCAACTACGACGTGCCGCTGCAACAGGAATCGTA
TCTGCATCGCATCGGACGCAGCGGGCGCTTCGGCAGAAAGGGTGTGGCCA
TCACGTTTGCGCGCTTCTCGGACAAGAAGGAAATGAGCGCGATCGAGAAG
TTCTACGGAATCCGGATACGAGAGTTGCCCGCGGACGTGGACAAGTATCT
GTGA

Coding sequence (CDS) from alignment at NODE_2664_length_5018_cov_3.423584:25..1278+

>Gcaud1763.t1 ID=Gcaud1763.t1|Name=Gcaud1763.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1254bp|location=Sequence derived from alignment at NODE_2664_length_5018_cov_3.423584:25..1278+ (Gracilaria caudata M_176_S67 male)
ATGTCCGGCATCGGAAGTGCGTCCccgcgctacgcgcccacctcccccac
cgcgtccgactccaccttcacgcgccgccAGGCCGAAAAGGCCACCTTCA
ACATCAACCGCGAGGTGCAGGTGTTCAAGAGCTTCGACGACATGCCGCTC
AAGGCGCCGCTGCTGCGCGGCATCTACTCCATCGGCTTCGACATGCCGTC
CGCCATCCAGCAGCGCTGCATCGTGCCCATGATTCGCGGCCACGACGTGG
TGGCGCAGGCGCAGAGCGGCACGGGCAAGACCGCCATGATTGCGATTGTG
GCGCTGCAACTGGCGTCCGCCACCGCGGCGCACACGCAGGTGCTTGTGCT
CAGCCCCACGCGCGAGCTCGCGGTGCAGACGCATCGTAACGTGGAGCTGT
TGGGCGAGTTTCTTTGCATTGGCTCGCACGCGTGTGTGGGCGGGAAGAAG
GTGGGTGATGATATCCGACGTCTGGCGAATGGCGGCGTGCACATTGTGAG
CGGAACGCCGGGTCGGGTGTACGATATGATTCAACGCAATGTGCTGCACA
CAAACAAGTTGCGCGTGTTGTTCATTGATGAGGCGGATGAGATGCTCACC
ATGGGCTTCAAGGAACAGGTGTACGATATCTATCGATATGCGCCGCCCAC
CGTGCAGGTGGTGCTTGTGTCGGCCACGCTGCCGTCCGATGTGTTGGAGA
TGAGCGAGAAGTTCATGACGCAGCCCATCTCCGTGTTGGTGAAGCGTGAC
GGGCTCAGTCTGGACGGCATTCGGCAGTTTTACGTGGACGTGGAGCAGGA
GGAGTGGAAGTTTGACACGCTGTGCGACCTGTACGAGACGCTCACCATCA
CGCAGGCAGTCATTTTCTGCAACACGCGACGAAAAGTGGAGTGGCTTGCA
AAGAAGATGAAGGAGGGCAACTTTGTGGTCACCGCTATGCACGGCGACAT
GAAACAGAAGGAGCGTGACTCGGTGATGGACTCGTTCCGCGCGGGCGACT
TCCGCGTGCTGATTGCCACCGACGTGTGGTCGAGAGGCATTGATGTGCAG
CAGGTGAGCCTGGTGATCAACTACGACGTGCCGCTGCAACAGGAATCGTA
TCTGCATCGCATCGGACGCAGCGGGCGCTTCGGCAGAAAGGGTGTGGCCA
TCACGTTTGCGCGCTTCTCGGACAAGAAGGAAATGAGCGCGATCGAGAAG
TTCTACGGAATCCGGATACGAGAGTTGCCCGCGGACGTGGACAAGTATCT
GTGA