Gcaud1762.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1762.t1
Unique Name	Gcaud1762.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	429

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_800_length_17764_cov_4.050076	contig	NODE_800_length_17764_cov_4.050076:15420..16706 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704275.1
Preferred name	RPT5
PFAMs	AAA
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03065
KEGG Pathway	ko03050,ko05169,map03050,map05169
KEGG Module	M00341
GOs	GO:0000166,GO:0000502,GO:0001678,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005838,GO:0005886,GO:0006355,GO:0006357,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0007088,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008540,GO:0009056,GO:0009057,GO:0009553,GO:0009555,GO:0009743,GO:0009746,GO:0009749,GO:0009756,GO:0009757,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010182,GO:0010243,GO:0010255,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010965,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017025,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0019725,GO:0019941,GO:0022607,GO:0022624,GO:0023052,GO:0030071,GO:0030162,GO:0030163,GO:0030433,GO:0030554,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031595,GO:0031597,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033500,GO:0033554,GO:0034284,GO:0034622,GO:0034976,GO:0035639,GO:0036094,GO:0036402,GO:0036503,GO:0042176,GO:0042221,GO:0042592,GO:0042593,GO:0042623,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043248,GO:0043254,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045893,GO:0045898,GO:0045899,GO:0045931,GO:0045935,GO:0045944,GO:0048229,GO:0048518,GO:0048522,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051603,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0055082,GO:0060255,GO:0060260,GO:0060261,GO:0061136,GO:0062033,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070682,GO:0070887,GO:0071310,GO:0071322,GO:0071326,GO:0071331,GO:0071333,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090068,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901700,GO:1901701,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1902680,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1903508,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2000112,GO:2000142,GO:2000144,GO:2001141,GO:2001252
Evalue	6.11e-209
EggNOG OGs	COG1222@1\|root,KOG0652@2759\|Eukaryota
Description	Belongs to the AAA ATPase family
COG category	O
BRITE	ko00000,ko00001,ko00002,ko03051

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1762	Gcaud1762	Gracilaria caudata M_176_S67 male	gene	NODE_800_length_17764_cov_4.050076 15420..16706 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1762.t1.stop1	Gcaud1762.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_800_length_17764_cov_4.050076 15420..15422 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1762.t1.CDS1	Gcaud1762.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_800_length_17764_cov_4.050076 15420..16706 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1762.t1.exon1	Gcaud1762.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_800_length_17764_cov_4.050076 15420..16706 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1762.t1.start1	Gcaud1762.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_800_length_17764_cov_4.050076 16704..16706 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1762.t1	Gcaud1762.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_800_length_17764_cov_4.050076 15420..16706 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_800_length_17764_cov_4.050076:15420..16706-
coding sequence from alignment at NODE_800_length_17764_cov_4.050076:15420..16706-

mRNA sequence

>Gcaud1762.t1 ID=Gcaud1762.t1|Name=Gcaud1762.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=429bp
MAAAALGDIAGELMQDETLDQEILHAPVDELLTRVRLLEAEVKVLRSESQ
RLTHEKNHTTEKIRLNTDKVKLNKQLPYLVGNIVEILDIEEEDEEDGANV
DLDSQRKGKAVVLKTSTRQTIFLPVIGLVPAEELKPADLVGVNKDSYLIL
EKLPAEYDSRVKAMEVDEKPTESYADVGGLDKQIQELVEAVVLPLTQKER
FDAVGIRPPKGVLMYGPPGVGKTLLARACAAQTNATFLKLAGPQLVQMFI
GDGAKLVRDAFALAKEKGPTIIFIDELDAIGTKRFDSELSGDREVQRTML
ELLNQLDGFSSDDNIKVIAATNRVDILDPALLRSGRIDRKIEFVLPDESA
RTIILQIHSRKMNVNKDVNFREIAAQCQQFNSAQLKAVTVEAGMLALRND
RGEIVHEDFVEGVLAVQAKKKGSLHYYS*

spliced messenger RNA

>Gcaud1762.t1 ID=Gcaud1762.t1|Name=Gcaud1762.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1287bp|location=Sequence derived from alignment at NODE_800_length_17764_cov_4.050076:15420..16706- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCGCCGCACTCGGCGATATCGCCGGCGAGCTTATGCAAGATGA
AACACTGGACCAGGAAATTCTGCACGCTCCCGTTGACGAGCTACTCACGC
GTGTGCGTTTGTTGGAAGCAGAGGTGAAGGTGCTTCGCAGCGAGAGTCAG
CGTCTAACACACGAGAAGAATCATACCACCGAGAAGATCCGTCTCAATAC
GGACAAGGTCAAACTGAACAAACAGCTGCCGTATTTAGTCGGCAACATCG
TCGAGATTCTTGATATCGAGGAGGAGGACGAGGAGGATGGTGCTAATGTC
GACCTTGATTCGCAACGCAAGGGAAAGGCTGTCGTGCTCAAGACCTCCAC
GCGACAGACTATTTTCCTCCCGGTTATTGGACTCGTTCCTGCTGAAGAGC
TCAAGCCGGCTGATCTAGTTGGGGTCAACAAAGACTCCTATCTCATACTT
GAGAAACTTCCTGCGGAGTACGATTCGCGAGTAAAGGCGATGGAGGTTGA
CGAAAAGCCCACGGAGTCGTACGCAGACGTTGGGGGACTCGACAAGCAGA
TCCAGGAGTTGGTGGAAGCTGTCGTACTGCCTCTTACGCAAAAGGAGCGT
TTTGACGCGGTGGGAATTCGTCCTCCAAAGGGCGTACTCATGTACGGTCC
ACCTGGTGTGGGAAAGACGCTCTTGGCTCGGGCATGTGCTGCACAGACCA
ATGCTACATTCCTAAAACTTGCTGGTCCACAACTTGTGCAGATGTTTATT
GGTGATGGTGCAAAACTTGTACGTGATGCGTTTGCGCTAGCTAAGGAAAA
GGGCCCTACTATTATCTTTATTGATGAGTTGGATGCTATTGGGACGAAAC
GGTTCGATTCCGAACTGAGTGGTGATCGAGAGGTGCAACGAACAATGCTT
GAGTTGCTGAATCAGCTTGACGGCTTCTCTTCCGACGACAACATCAAAGT
GATTGCAGCCACCAATCGTGTGGATATTTTGGATCCGGCCTTGTTGAGGT
CGGGTCGAATCGATAGGAAGATTGAGTTTGTGCTGCCCGATGAAAGCGCG
AGAACGATTATCTTGCAGATTCATTCTAGAAAGATGAATGTGAATAAGGA
TGTGAATTTCAGAGAGATTGCTGCACAATGCCAGCAATTTAACTCGGCGC
AGTTGAAAGCCGTGACGGTTGAGGCGGGCATGTTGGCGTTGAGAAATGAT
CGCGGCGAGATCGTGCATGAGGACTTTGTTGAGGGCGTGTTAGCAGTGCA
GGCAAAGAAGAAGGGTTCGTTACACTACTACTCGTAA

protein sequence of Gcaud1762.t1

>Gcaud1762.t1 ID=Gcaud1762.t1|Name=Gcaud1762.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=429bp
MAAAALGDIAGELMQDETLDQEILHAPVDELLTRVRLLEAEVKVLRSESQ
RLTHEKNHTTEKIRLNTDKVKLNKQLPYLVGNIVEILDIEEEDEEDGANV
DLDSQRKGKAVVLKTSTRQTIFLPVIGLVPAEELKPADLVGVNKDSYLIL
EKLPAEYDSRVKAMEVDEKPTESYADVGGLDKQIQELVEAVVLPLTQKER
FDAVGIRPPKGVLMYGPPGVGKTLLARACAAQTNATFLKLAGPQLVQMFI
GDGAKLVRDAFALAKEKGPTIIFIDELDAIGTKRFDSELSGDREVQRTML
ELLNQLDGFSSDDNIKVIAATNRVDILDPALLRSGRIDRKIEFVLPDESA
RTIILQIHSRKMNVNKDVNFREIAAQCQQFNSAQLKAVTVEAGMLALRND
RGEIVHEDFVEGVLAVQAKKKGSLHYYS*

mRNA from alignment at NODE_800_length_17764_cov_4.050076:15420..16706-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1762.t1 ID=Gcaud1762.t1|Name=Gcaud1762.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1287bp|location=Sequence derived from alignment at NODE_800_length_17764_cov_4.050076:15420..16706- (Gracilaria caudata M_176_S67 male)
ATGGCCGCCGCCGCACTCGGCGATATCGCCGGCGAGCTTATGCAAGATGA
AACACTGGACCAGGAAATTCTGCACGCTCCCGTTGACGAGCTACTCACGC
GTGTGCGTTTGTTGGAAGCAGAGGTGAAGGTGCTTCGCAGCGAGAGTCAG
CGTCTAACACACGAGAAGAATCATACCACCGAGAAGATCCGTCTCAATAC
GGACAAGGTCAAACTGAACAAACAGCTGCCGTATTTAGTCGGCAACATCG
TCGAGATTCTTGATATCGAGGAGGAGGACGAGGAGGATGGTGCTAATGTC
GACCTTGATTCGCAACGCAAGGGAAAGGCTGTCGTGCTCAAGACCTCCAC
GCGACAGACTATTTTCCTCCCGGTTATTGGACTCGTTCCTGCTGAAGAGC
TCAAGCCGGCTGATCTAGTTGGGGTCAACAAAGACTCCTATCTCATACTT
GAGAAACTTCCTGCGGAGTACGATTCGCGAGTAAAGGCGATGGAGGTTGA
CGAAAAGCCCACGGAGTCGTACGCAGACGTTGGGGGACTCGACAAGCAGA
TCCAGGAGTTGGTGGAAGCTGTCGTACTGCCTCTTACGCAAAAGGAGCGT
TTTGACGCGGTGGGAATTCGTCCTCCAAAGGGCGTACTCATGTACGGTCC
ACCTGGTGTGGGAAAGACGCTCTTGGCTCGGGCATGTGCTGCACAGACCA
ATGCTACATTCCTAAAACTTGCTGGTCCACAACTTGTGCAGATGTTTATT
GGTGATGGTGCAAAACTTGTACGTGATGCGTTTGCGCTAGCTAAGGAAAA
GGGCCCTACTATTATCTTTATTGATGAGTTGGATGCTATTGGGACGAAAC
GGTTCGATTCCGAACTGAGTGGTGATCGAGAGGTGCAACGAACAATGCTT
GAGTTGCTGAATCAGCTTGACGGCTTCTCTTCCGACGACAACATCAAAGT
GATTGCAGCCACCAATCGTGTGGATATTTTGGATCCGGCCTTGTTGAGGT
CGGGTCGAATCGATAGGAAGATTGAGTTTGTGCTGCCCGATGAAAGCGCG
AGAACGATTATCTTGCAGATTCATTCTAGAAAGATGAATGTGAATAAGGA
TGTGAATTTCAGAGAGATTGCTGCACAATGCCAGCAATTTAACTCGGCGC
AGTTGAAAGCCGTGACGGTTGAGGCGGGCATGTTGGCGTTGAGAAATGAT
CGCGGCGAGATCGTGCATGAGGACTTTGTTGAGGGCGTGTTAGCAGTGCA
GGCAAAGAAGAAGGGTTCGTTACACTACTACTCGTAA

Coding sequence (CDS) from alignment at NODE_800_length_17764_cov_4.050076:15420..16706-

>Gcaud1762.t1 ID=Gcaud1762.t1|Name=Gcaud1762.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1287bp|location=Sequence derived from alignment at NODE_800_length_17764_cov_4.050076:15420..16706- (Gracilaria caudata M_176_S67 male)
ATGGCCGCCGCCGCACTCGGCGATATCGCCGGCGAGCTTATGCAAGATGA
AACACTGGACCAGGAAATTCTGCACGCTCCCGTTGACGAGCTACTCACGC
GTGTGCGTTTGTTGGAAGCAGAGGTGAAGGTGCTTCGCAGCGAGAGTCAG
CGTCTAACACACGAGAAGAATCATACCACCGAGAAGATCCGTCTCAATAC
GGACAAGGTCAAACTGAACAAACAGCTGCCGTATTTAGTCGGCAACATCG
TCGAGATTCTTGATATCGAGGAGGAGGACGAGGAGGATGGTGCTAATGTC
GACCTTGATTCGCAACGCAAGGGAAAGGCTGTCGTGCTCAAGACCTCCAC
GCGACAGACTATTTTCCTCCCGGTTATTGGACTCGTTCCTGCTGAAGAGC
TCAAGCCGGCTGATCTAGTTGGGGTCAACAAAGACTCCTATCTCATACTT
GAGAAACTTCCTGCGGAGTACGATTCGCGAGTAAAGGCGATGGAGGTTGA
CGAAAAGCCCACGGAGTCGTACGCAGACGTTGGGGGACTCGACAAGCAGA
TCCAGGAGTTGGTGGAAGCTGTCGTACTGCCTCTTACGCAAAAGGAGCGT
TTTGACGCGGTGGGAATTCGTCCTCCAAAGGGCGTACTCATGTACGGTCC
ACCTGGTGTGGGAAAGACGCTCTTGGCTCGGGCATGTGCTGCACAGACCA
ATGCTACATTCCTAAAACTTGCTGGTCCACAACTTGTGCAGATGTTTATT
GGTGATGGTGCAAAACTTGTACGTGATGCGTTTGCGCTAGCTAAGGAAAA
GGGCCCTACTATTATCTTTATTGATGAGTTGGATGCTATTGGGACGAAAC
GGTTCGATTCCGAACTGAGTGGTGATCGAGAGGTGCAACGAACAATGCTT
GAGTTGCTGAATCAGCTTGACGGCTTCTCTTCCGACGACAACATCAAAGT
GATTGCAGCCACCAATCGTGTGGATATTTTGGATCCGGCCTTGTTGAGGT
CGGGTCGAATCGATAGGAAGATTGAGTTTGTGCTGCCCGATGAAAGCGCG
AGAACGATTATCTTGCAGATTCATTCTAGAAAGATGAATGTGAATAAGGA
TGTGAATTTCAGAGAGATTGCTGCACAATGCCAGCAATTTAACTCGGCGC
AGTTGAAAGCCGTGACGGTTGAGGCGGGCATGTTGGCGTTGAGAAATGAT
CGCGGCGAGATCGTGCATGAGGACTTTGTTGAGGGCGTGTTAGCAGTGCA
GGCAAAGAAGAAGGGTTCGTTACACTACTACTCGTAA