Gcaud176.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud176.t1
Unique NameGcaud176.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length171
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_733_length_18975_cov_3.965368contigNODE_733_length_18975_cov_3.965368:11411..11923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud176Gcaud176Gracilaria caudata M_176_S67 malegeneNODE_733_length_18975_cov_3.965368 11411..11923 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud176.t1.start1Gcaud176.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_733_length_18975_cov_3.965368 11411..11413 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud176.t1.CDS1Gcaud176.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_733_length_18975_cov_3.965368 11411..11923 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud176.t1.exon1Gcaud176.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_733_length_18975_cov_3.965368 11411..11923 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud176.t1.stop1Gcaud176.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_733_length_18975_cov_3.965368 11921..11923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud176.t1Gcaud176.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_733_length_18975_cov_3.965368 11411..11923 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud176.t1 ID=Gcaud176.t1|Name=Gcaud176.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=171bp
MPISRTTGPAFHSFVSCDQRRGVRLWVCVTSADDCRLRNGALRVRLVVQN
IESEAIRLQPQRIEVQLLDGAALQVRPQLASSSLSIAAINFERWSSTPKE
HVLMLDEFAVVCVDIRIPDTVFEVDVLERLKQICIPIETDTVTSVGATFV
DKHVWDAYELLPGGWWVRRA*
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spliced messenger RNA

>Gcaud176.t1 ID=Gcaud176.t1|Name=Gcaud176.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=513bp|location=Sequence derived from alignment at NODE_733_length_18975_cov_3.965368:11411..11923+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCATCTCGCGAACCACCGGTCCGGCTTTCCATTCCTTCGTGAGCTG
CGACCAGCGACGCGGTGTGCGATTGTGGGTGTGCGTGACGAGTGCTGATG
ATTGCCGATTGCGCAACGGAGCGCTGCGGGTGCGATTGGTGGTGCAGAAC
ATTGAGAGCGAAGCAATACGGCTGCAACCACAGCGTATTGAGGTTCAGTT
ACTGGACGGAGCTGCGTTGCAGGTGCGACCACAACTGGCGTCCAGTAGTC
TGTCCATCGCAGCCATAAACTTTGAACGCTGGTCATCCACACCAAAGGAG
CACGTGTTGATGTTGGATGAGTTTGCGGTTGTATGCGTGGACATTCGAAT
ACCAGATACAGTATTTGAGGTGGACGTACTGGAACGATTAAAGCAAATCT
GTATCCCGATTGAAACCGACACCGTCACCAGCGTGGGCGCCACCTTCGTA
GACAAGCATGTGTGGGACGCGTACGAGCTGCTTCCTGGGGGCTGGTGGGT
GCGTCGAGCATAA
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protein sequence of Gcaud176.t1

>Gcaud176.t1 ID=Gcaud176.t1|Name=Gcaud176.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=171bp
MPISRTTGPAFHSFVSCDQRRGVRLWVCVTSADDCRLRNGALRVRLVVQN
IESEAIRLQPQRIEVQLLDGAALQVRPQLASSSLSIAAINFERWSSTPKE
HVLMLDEFAVVCVDIRIPDTVFEVDVLERLKQICIPIETDTVTSVGATFV
DKHVWDAYELLPGGWWVRRA*
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mRNA from alignment at NODE_733_length_18975_cov_3.965368:11411..11923+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud176.t1 ID=Gcaud176.t1|Name=Gcaud176.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=513bp|location=Sequence derived from alignment at NODE_733_length_18975_cov_3.965368:11411..11923+ (Gracilaria caudata M_176_S67 male)
ATGCCCATCTCGCGAACCACCGGTCCGGCTTTCCATTCCTTCGTGAGCTG
CGACCAGCGACGCGGTGTGCGATTGTGGGTGTGCGTGACGAGTGCTGATG
ATTGCCGATTGCGCAACGGAGCGCTGCGGGTGCGATTGGTGGTGCAGAAC
ATTGAGAGCGAAGCAATACGGCTGCAACCACAGCGTATTGAGGTTCAGTT
ACTGGACGGAGCTGCGTTGCAGGTGCGACCACAACTGGCGTCCAGTAGTC
TGTCCATCGCAGCCATAAACTTTGAACGCTGGTCATCCACACCAAAGGAG
CACGTGTTGATGTTGGATGAGTTTGCGGTTGTATGCGTGGACATTCGAAT
ACCAGATACAGTATTTGAGGTGGACGTACTGGAACGATTAAAGCAAATCT
GTATCCCGATTGAAACCGACACCGTCACCAGCGTGGGCGCCACCTTCGTA
GACAAGCATGTGTGGGACGCGTACGAGCTGCTTCCTGGGGGCTGGTGGGT
GCGTCGAGCATAA
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Coding sequence (CDS) from alignment at NODE_733_length_18975_cov_3.965368:11411..11923+

>Gcaud176.t1 ID=Gcaud176.t1|Name=Gcaud176.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=513bp|location=Sequence derived from alignment at NODE_733_length_18975_cov_3.965368:11411..11923+ (Gracilaria caudata M_176_S67 male)
ATGCCCATCTCGCGAACCACCGGTCCGGCTTTCCATTCCTTCGTGAGCTG
CGACCAGCGACGCGGTGTGCGATTGTGGGTGTGCGTGACGAGTGCTGATG
ATTGCCGATTGCGCAACGGAGCGCTGCGGGTGCGATTGGTGGTGCAGAAC
ATTGAGAGCGAAGCAATACGGCTGCAACCACAGCGTATTGAGGTTCAGTT
ACTGGACGGAGCTGCGTTGCAGGTGCGACCACAACTGGCGTCCAGTAGTC
TGTCCATCGCAGCCATAAACTTTGAACGCTGGTCATCCACACCAAAGGAG
CACGTGTTGATGTTGGATGAGTTTGCGGTTGTATGCGTGGACATTCGAAT
ACCAGATACAGTATTTGAGGTGGACGTACTGGAACGATTAAAGCAAATCT
GTATCCCGATTGAAACCGACACCGTCACCAGCGTGGGCGCCACCTTCGTA
GACAAGCATGTGTGGGACGCGTACGAGCTGCTTCCTGGGGGCTGGTGGGT
GCGTCGAGCATAA
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