Gcaud1759.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1759.t1
Unique Name	Gcaud1759.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	375

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_800_length_17764_cov_4.050076	contig	NODE_800_length_17764_cov_4.050076:4818..5942 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	99598.Cal7507_5244
Preferred name	chlG
PFAMs	UbiA
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00020
KEGG ko	ko:K04040
KEGG Reaction	R06284,R09067,R11514,R11517
KEGG Pathway	ko00860,ko01100,ko01110,map00860,map01100,map01110
Evalue	4.99e-155
EggNOG OGs	COG0382@1\|root,COG0382@2\|Bacteria,1G2BD@1117\|Cyanobacteria,1HJH8@1161\|Nostocales
EC	2.5.1.133,2.5.1.62
Description	TIGRFAM bacteriochlorophyll chlorophyll synthetase
COG category	H
BiGG Reaction	iJN678.chlG
BRITE	ko00000,ko00001,ko01000,ko01006

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1759	Gcaud1759	Gracilaria caudata M_176_S67 male	gene	NODE_800_length_17764_cov_4.050076 4818..5942 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1759.t1.start1	Gcaud1759.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_800_length_17764_cov_4.050076 4818..4820 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1759.t1.CDS1	Gcaud1759.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_800_length_17764_cov_4.050076 4818..5942 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1759.t1.exon1	Gcaud1759.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_800_length_17764_cov_4.050076 4818..5942 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1759.t1.stop1	Gcaud1759.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_800_length_17764_cov_4.050076 5940..5942 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1759.t1	Gcaud1759.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_800_length_17764_cov_4.050076 4818..5942 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_800_length_17764_cov_4.050076:4818..5942+
coding sequence from alignment at NODE_800_length_17764_cov_4.050076:4818..5942+

mRNA sequence

>Gcaud1759.t1 ID=Gcaud1759.t1|Name=Gcaud1759.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=375bp
MAGQRVAFAQPLALYSSARVSLLCGTSLVASRRGRLRRAGRARLVVCTSD
TPNNNDSSAPGAVRQLLGIRGADVTSSKWRIRLQLMKPVTWVPLLWGVSC
GAAASGNYTWTPEHVAQALACMVLAGPLLTGYTQTLNDWCDREIDAINEP
QRPIPSGAISEREVKTQLVALLVAGIALSVGIDVWTAHEWPVNTALTLFG
SFIAYIYSEPPLKLKQNGWLGCYALGASYISLPWWCGHAAFGQLDWKVML
LTLFYSFAGLGIAIVNDFKSVEGDRATGMQSLPVMFGIDTAKWICAGMID
GFQLLVAAVIYAIGEQKYAAGIFALVIPQIVFQFQYLLKDPVKYDVKYQA
AAQPFLVIGILVTALAVGHHGPLL*

spliced messenger RNA

>Gcaud1759.t1 ID=Gcaud1759.t1|Name=Gcaud1759.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1125bp|location=Sequence derived from alignment at NODE_800_length_17764_cov_4.050076:4818..5942+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGGTCAGCGCGTCGCGTTCGCGCAGCCGCTTGCCCTTTACTCGTC
CGCACGCGTCTCGCTTCTATGCGGTACGTCGCTCGTCGCGTCGCGGCGCG
GACGCTTGCGTCGCGCTGGTCGAGCGCGCCTCGTGGTGTGTACCAGTGAC
ACGCCCAACAACAACGACTCCTCGGCGCCGGGTGCCGTGCGTCAGTTGCT
GGGTATTCGTGGTGCAGATGTCACATCGTCCAAATGGCGCATCCGTCTGC
AGCTTATGAAGCCCGTCACATGGGTGCCGTTGTTGTGGGGCGTGTCTTGT
GGCGCCGCTGCATCGGGCAATTATACGTGGACGCCAGAGCATGTGGCGCA
GGCGCTGGCGTGTATGGTGTTGGCGGGGCCATTGTTGACGGGCTATACGC
AGACTTTGAATGATTGGTGTGATAGGGAGATTGATGCTATCAATGAGCCG
CAGAGACCTATTCCGTCGGGCGCCATTTCGGAGAGGGAGGTTAAGACGCA
GTTGGTTGCTTTGCTCGTTGCGGGCATTGCGTTGAGCGTTGGCATTGACG
TGTGGACGGCGCATGAATGGCCGGTTAACACAGCCCTCACCTTGTTTGGA
TCCTTTATTGCGTACATATATTCGGAGCCTCCATTGAAGCTCAAGCAGAA
TGGGTGGCTCGGGTGTTATGCGTTGGGAGCCAGTTACATCAGTCTCCCTT
GGTGGTGTGGTCATGCCGCCTTTGGGCAGCTGGATTGGAAGGTTATGTTG
CTCACTTTGTTCTACTCCTTTGCGGGGCTTGGCATTGCAATCGTCAATGA
TTTTAAGAGCGTTGAGGGTGATCGTGCCACTGGTATGCAGAGCCTGCCGG
TGATGTTTGGAATCGACACGGCCAAATGGATTTGTGCTGGTATGATTGAT
GGCTTCCAGTTACTTGTGGCCGCTGTCATTTATGCAATTGGAGAGCAGAA
GTATGCTGCTGGTATTTTCGCTTTGGTTATACCGCAGATAGTGTTCCAGT
TCCAGTACTTGTTGAAGGATCCCGTCAAGTACGACGTCAAGTACCAGGCC
GCTGCGCAACCGTTTTTGGTGATTGGTATCCTTGTCACTGCCCTTGCCGT
CGGCCATCATGGACCGCTTCTGTGA

protein sequence of Gcaud1759.t1

>Gcaud1759.t1 ID=Gcaud1759.t1|Name=Gcaud1759.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=375bp
MAGQRVAFAQPLALYSSARVSLLCGTSLVASRRGRLRRAGRARLVVCTSD
TPNNNDSSAPGAVRQLLGIRGADVTSSKWRIRLQLMKPVTWVPLLWGVSC
GAAASGNYTWTPEHVAQALACMVLAGPLLTGYTQTLNDWCDREIDAINEP
QRPIPSGAISEREVKTQLVALLVAGIALSVGIDVWTAHEWPVNTALTLFG
SFIAYIYSEPPLKLKQNGWLGCYALGASYISLPWWCGHAAFGQLDWKVML
LTLFYSFAGLGIAIVNDFKSVEGDRATGMQSLPVMFGIDTAKWICAGMID
GFQLLVAAVIYAIGEQKYAAGIFALVIPQIVFQFQYLLKDPVKYDVKYQA
AAQPFLVIGILVTALAVGHHGPLL*

mRNA from alignment at NODE_800_length_17764_cov_4.050076:4818..5942+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1759.t1 ID=Gcaud1759.t1|Name=Gcaud1759.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1125bp|location=Sequence derived from alignment at NODE_800_length_17764_cov_4.050076:4818..5942+ (Gracilaria caudata M_176_S67 male)
ATGGCGGGTCAGCGCGTCGCGTTCGCGCAGCCGCTTGCCCTTTACTCGTC
CGCACGCGTCTCGCTTCTATGCGGTACGTCGCTCGTCGCGTCGCGGCGCG
GACGCTTGCGTCGCGCTGGTCGAGCGCGCCTCGTGGTGTGTACCAGTGAC
ACGCCCAACAACAACGACTCCTCGGCGCCGGGTGCCGTGCGTCAGTTGCT
GGGTATTCGTGGTGCAGATGTCACATCGTCCAAATGGCGCATCCGTCTGC
AGCTTATGAAGCCCGTCACATGGGTGCCGTTGTTGTGGGGCGTGTCTTGT
GGCGCCGCTGCATCGGGCAATTATACGTGGACGCCAGAGCATGTGGCGCA
GGCGCTGGCGTGTATGGTGTTGGCGGGGCCATTGTTGACGGGCTATACGC
AGACTTTGAATGATTGGTGTGATAGGGAGATTGATGCTATCAATGAGCCG
CAGAGACCTATTCCGTCGGGCGCCATTTCGGAGAGGGAGGTTAAGACGCA
GTTGGTTGCTTTGCTCGTTGCGGGCATTGCGTTGAGCGTTGGCATTGACG
TGTGGACGGCGCATGAATGGCCGGTTAACACAGCCCTCACCTTGTTTGGA
TCCTTTATTGCGTACATATATTCGGAGCCTCCATTGAAGCTCAAGCAGAA
TGGGTGGCTCGGGTGTTATGCGTTGGGAGCCAGTTACATCAGTCTCCCTT
GGTGGTGTGGTCATGCCGCCTTTGGGCAGCTGGATTGGAAGGTTATGTTG
CTCACTTTGTTCTACTCCTTTGCGGGGCTTGGCATTGCAATCGTCAATGA
TTTTAAGAGCGTTGAGGGTGATCGTGCCACTGGTATGCAGAGCCTGCCGG
TGATGTTTGGAATCGACACGGCCAAATGGATTTGTGCTGGTATGATTGAT
GGCTTCCAGTTACTTGTGGCCGCTGTCATTTATGCAATTGGAGAGCAGAA
GTATGCTGCTGGTATTTTCGCTTTGGTTATACCGCAGATAGTGTTCCAGT
TCCAGTACTTGTTGAAGGATCCCGTCAAGTACGACGTCAAGTACCAGGCC
GCTGCGCAACCGTTTTTGGTGATTGGTATCCTTGTCACTGCCCTTGCCGT
CGGCCATCATGGACCGCTTCTGTGA

Coding sequence (CDS) from alignment at NODE_800_length_17764_cov_4.050076:4818..5942+

>Gcaud1759.t1 ID=Gcaud1759.t1|Name=Gcaud1759.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1125bp|location=Sequence derived from alignment at NODE_800_length_17764_cov_4.050076:4818..5942+ (Gracilaria caudata M_176_S67 male)
ATGGCGGGTCAGCGCGTCGCGTTCGCGCAGCCGCTTGCCCTTTACTCGTC
CGCACGCGTCTCGCTTCTATGCGGTACGTCGCTCGTCGCGTCGCGGCGCG
GACGCTTGCGTCGCGCTGGTCGAGCGCGCCTCGTGGTGTGTACCAGTGAC
ACGCCCAACAACAACGACTCCTCGGCGCCGGGTGCCGTGCGTCAGTTGCT
GGGTATTCGTGGTGCAGATGTCACATCGTCCAAATGGCGCATCCGTCTGC
AGCTTATGAAGCCCGTCACATGGGTGCCGTTGTTGTGGGGCGTGTCTTGT
GGCGCCGCTGCATCGGGCAATTATACGTGGACGCCAGAGCATGTGGCGCA
GGCGCTGGCGTGTATGGTGTTGGCGGGGCCATTGTTGACGGGCTATACGC
AGACTTTGAATGATTGGTGTGATAGGGAGATTGATGCTATCAATGAGCCG
CAGAGACCTATTCCGTCGGGCGCCATTTCGGAGAGGGAGGTTAAGACGCA
GTTGGTTGCTTTGCTCGTTGCGGGCATTGCGTTGAGCGTTGGCATTGACG
TGTGGACGGCGCATGAATGGCCGGTTAACACAGCCCTCACCTTGTTTGGA
TCCTTTATTGCGTACATATATTCGGAGCCTCCATTGAAGCTCAAGCAGAA
TGGGTGGCTCGGGTGTTATGCGTTGGGAGCCAGTTACATCAGTCTCCCTT
GGTGGTGTGGTCATGCCGCCTTTGGGCAGCTGGATTGGAAGGTTATGTTG
CTCACTTTGTTCTACTCCTTTGCGGGGCTTGGCATTGCAATCGTCAATGA
TTTTAAGAGCGTTGAGGGTGATCGTGCCACTGGTATGCAGAGCCTGCCGG
TGATGTTTGGAATCGACACGGCCAAATGGATTTGTGCTGGTATGATTGAT
GGCTTCCAGTTACTTGTGGCCGCTGTCATTTATGCAATTGGAGAGCAGAA
GTATGCTGCTGGTATTTTCGCTTTGGTTATACCGCAGATAGTGTTCCAGT
TCCAGTACTTGTTGAAGGATCCCGTCAAGTACGACGTCAAGTACCAGGCC
GCTGCGCAACCGTTTTTGGTGATTGGTATCCTTGTCACTGCCCTTGCCGT
CGGCCATCATGGACCGCTTCTGTGA