Gcaud1756.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1756.t1
Unique Name	Gcaud1756.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	474

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1193_length_12810_cov_3.289960	contig	NODE_1193_length_12810_cov_3.289960:9128..10549 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ14755
PFAMs	DUF773
Max annot lvl	35493\|Streptophyta
GOs	GO:0000079,GO:0001932,GO:0005575,GO:0005623,GO:0007346,GO:0008150,GO:0012505,GO:0019220,GO:0019222,GO:0031323,GO:0031399,GO:0032268,GO:0042325,GO:0043549,GO:0044464,GO:0045859,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051174,GO:0051246,GO:0051338,GO:0051726,GO:0060255,GO:0065007,GO:0065009,GO:0071900,GO:0080090,GO:1904029
Evalue	1.83e-24
EggNOG OGs	KOG2607@1\|root,KOG2607@2759\|Eukaryota,37PEQ@33090\|Viridiplantae,3GE8J@35493\|Streptophyta
Description	CDK5RAP3-like protein
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1756	Gcaud1756	Gracilaria caudata M_176_S67 male	gene	NODE_1193_length_12810_cov_3.289960 9128..10549 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1756.t1.stop1	Gcaud1756.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1193_length_12810_cov_3.289960 9128..9130 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1756.t1.CDS1	Gcaud1756.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1193_length_12810_cov_3.289960 9128..10549 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1756.t1.exon1	Gcaud1756.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1193_length_12810_cov_3.289960 9128..10549 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1756.t1.start1	Gcaud1756.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1193_length_12810_cov_3.289960 10547..10549 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1756.t1	Gcaud1756.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1193_length_12810_cov_3.289960 9128..10549 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1193_length_12810_cov_3.289960:9128..10549-
coding sequence from alignment at NODE_1193_length_12810_cov_3.289960:9128..10549-

mRNA sequence

>Gcaud1756.t1 ID=Gcaud1756.t1|Name=Gcaud1756.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=474bp
LPPADKDLLGRYKSPVLRAWAAAIGAFENGAVYLADAAQLMTHNTNNEAV
AIKANMARLNKNLAEFARRETQLIRAAAEAAQRFEQALRQYRLQDDALCD
FYAQLLAHVRSELPLVLQQAVQQTRCERFARCVDYYGAFCSYVGHGGDDG
GVCAAVHAVMHNDVHALTAPLERQPSTHGVDWGVHMDMDMDMASAEQALP
RVQPPESAQAPIDWDIEIGETGIEIEETGIEIEEKGTASQPTEKHEQNDE
EKLVHAEHDASAQAAAIDWSAAMGVLNGASERSEDAPESAEPSTATLCDA
VFREQYLNDLIELQAFLTQRRAELRRIANTDVALALQQSNSAPTELKGVD
VDAVHDMCGAVDDAIEAINSAQTRKLVALQSSDKLLERTAKGVLEKKHAA
ERTRGAIDVLRKQRAAAAVELKEEMAGLERVAEQTRSVQRQTEEALSRLY
KGRTVNIVGDINVLFAHKIKINK*

spliced messenger RNA

>Gcaud1756.t1 ID=Gcaud1756.t1|Name=Gcaud1756.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at NODE_1193_length_12810_cov_3.289960:9128..10549- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCCTCCCGCCGACAAGGACTTGCTCGGTCGCTACAAATCGCCCGTGCT
TCGCGCGTGGGCCGCCGCCATTGGCGCGTTTGAAAACGGCGCCGTGTATC
TTGCCGACGCGGCGCAGCTTATGACGCACAACACCAATAACGAGGCGGTG
GCCATCAAGGCCAACATGGCGCGCCTCAACAAGAACCTGGCCGAGTTTGC
ACGCCGAGAGACGCAACTGATCCGCGCGGCCGCCGAAGCGGCGCAGCGCT
TTGAACAGGCGCTGCGGCAGTACCGACTGCAGGACGACGCGTTGTGCGAC
TTTTACGCGCAGTTGCTGGCGCACGTGCGCAGCGAGCTGCCGCTGGTGTT
GCAACAGGCGGTACAACAAACGCGCTGCGAGCGCTTTGCACGCTGTGTGG
ACTATTATGGCGCGTTTTGTTCGTACGTGGGTCACGGCGGCGATGACGGC
GGCGTGTGTGCAGCGGTTCATGCCGTGATGCATAACGATGTGCACGCGTT
GACTGCGCCGCTCGAACGGCAGCCGTCGACGCACGGCGTGGATTGGGGAG
TGCACATGGACATGGACATGGACATGGCGTCGGCTGAACAAGCGCTGCCG
CGCGTACAGCCGCCCGAGTCGGCACAGGCGCCGATCGACTGGGACATCGA
GATCGGCGAGACGGGCATCGAGATCGAGGAGACGGGCATCGAGATCGAGG
AGAAGGGCACCGCCTCGCAACCAACTGAGAAGCACGAGCAGAACGACGAG
GAGAAGCTCGTGCACGCTGAACACGACGCCTCAGCTCAAGCGGCCGCCAT
TGACTGGAGTGCCGCCATGGGCGTGTTGAACGGCGCGAGCGAGCGCAGCG
AGGATGCGCCCGAAAGCGCTGAGCCATCCACCGCCACGCTGTGCGACGCC
GTTTTCCGCGAGCAATACCTCAACGATCTCATCGAACTGCAAGCGTTTCT
GACGCAGCGGCGCGCGGAGTTGAGGCGCATCGCCAACACGGACGTGGCGC
TGGCGTTACAACAGTCCAACTCGGCGCCGACGGAGCTCAAAGGCGTGGAT
GTGGATGCGGTGCACGACATGTGCGGCGCGGTGGACGACGCGATTGAGGC
GATTAACAGCGCGCAGACGAGGAAGCTTGTGGCGCTGCAAAGCAGTGACA
AGCTGCTGGAGCGCACGGCGAAGGGCGTGTTGGAGAAGAAGCACGCGGCG
GAGCGGACGAGAGGCGCGATTGATGTGCTGAGGAAACAGCGCGCGGCGGC
GGCGGTGGAGCTGAAGGAGGAGATGGCGGGCTTGGAACGCGTGGCGGAGC
AGACGAGGAGCGTGCAGAGGCAGACGGAGGAGGCGTTGTCGCGCTTGTAC
AAGGGCAGGACGGTCAACATTGTGGGAGACATCAACGTGCTGTTTGCGCA
CAAAATAAAAATAAACAAGTGA

protein sequence of Gcaud1756.t1

>Gcaud1756.t1 ID=Gcaud1756.t1|Name=Gcaud1756.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=474bp
LPPADKDLLGRYKSPVLRAWAAAIGAFENGAVYLADAAQLMTHNTNNEAV
AIKANMARLNKNLAEFARRETQLIRAAAEAAQRFEQALRQYRLQDDALCD
FYAQLLAHVRSELPLVLQQAVQQTRCERFARCVDYYGAFCSYVGHGGDDG
GVCAAVHAVMHNDVHALTAPLERQPSTHGVDWGVHMDMDMDMASAEQALP
RVQPPESAQAPIDWDIEIGETGIEIEETGIEIEEKGTASQPTEKHEQNDE
EKLVHAEHDASAQAAAIDWSAAMGVLNGASERSEDAPESAEPSTATLCDA
VFREQYLNDLIELQAFLTQRRAELRRIANTDVALALQQSNSAPTELKGVD
VDAVHDMCGAVDDAIEAINSAQTRKLVALQSSDKLLERTAKGVLEKKHAA
ERTRGAIDVLRKQRAAAAVELKEEMAGLERVAEQTRSVQRQTEEALSRLY
KGRTVNIVGDINVLFAHKIKINK*

mRNA from alignment at NODE_1193_length_12810_cov_3.289960:9128..10549-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1756.t1 ID=Gcaud1756.t1|Name=Gcaud1756.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at NODE_1193_length_12810_cov_3.289960:9128..10549- (Gracilaria caudata M_176_S67 male)
CTGCCTCCCGCCGACAAGGACTTGCTCGGTCGCTACAAATCGCCCGTGCT
TCGCGCGTGGGCCGCCGCCATTGGCGCGTTTGAAAACGGCGCCGTGTATC
TTGCCGACGCGGCGCAGCTTATGACGCACAACACCAATAACGAGGCGGTG
GCCATCAAGGCCAACATGGCGCGCCTCAACAAGAACCTGGCCGAGTTTGC
ACGCCGAGAGACGCAACTGATCCGCGCGGCCGCCGAAGCGGCGCAGCGCT
TTGAACAGGCGCTGCGGCAGTACCGACTGCAGGACGACGCGTTGTGCGAC
TTTTACGCGCAGTTGCTGGCGCACGTGCGCAGCGAGCTGCCGCTGGTGTT
GCAACAGGCGGTACAACAAACGCGCTGCGAGCGCTTTGCACGCTGTGTGG
ACTATTATGGCGCGTTTTGTTCGTACGTGGGTCACGGCGGCGATGACGGC
GGCGTGTGTGCAGCGGTTCATGCCGTGATGCATAACGATGTGCACGCGTT
GACTGCGCCGCTCGAACGGCAGCCGTCGACGCACGGCGTGGATTGGGGAG
TGCACATGGACATGGACATGGACATGGCGTCGGCTGAACAAGCGCTGCCG
CGCGTACAGCCGCCCGAGTCGGCACAGGCGCCGATCGACTGGGACATCGA
GATCGGCGAGACGGGCATCGAGATCGAGGAGACGGGCATCGAGATCGAGG
AGAAGGGCACCGCCTCGCAACCAACTGAGAAGCACGAGCAGAACGACGAG
GAGAAGCTCGTGCACGCTGAACACGACGCCTCAGCTCAAGCGGCCGCCAT
TGACTGGAGTGCCGCCATGGGCGTGTTGAACGGCGCGAGCGAGCGCAGCG
AGGATGCGCCCGAAAGCGCTGAGCCATCCACCGCCACGCTGTGCGACGCC
GTTTTCCGCGAGCAATACCTCAACGATCTCATCGAACTGCAAGCGTTTCT
GACGCAGCGGCGCGCGGAGTTGAGGCGCATCGCCAACACGGACGTGGCGC
TGGCGTTACAACAGTCCAACTCGGCGCCGACGGAGCTCAAAGGCGTGGAT
GTGGATGCGGTGCACGACATGTGCGGCGCGGTGGACGACGCGATTGAGGC
GATTAACAGCGCGCAGACGAGGAAGCTTGTGGCGCTGCAAAGCAGTGACA
AGCTGCTGGAGCGCACGGCGAAGGGCGTGTTGGAGAAGAAGCACGCGGCG
GAGCGGACGAGAGGCGCGATTGATGTGCTGAGGAAACAGCGCGCGGCGGC
GGCGGTGGAGCTGAAGGAGGAGATGGCGGGCTTGGAACGCGTGGCGGAGC
AGACGAGGAGCGTGCAGAGGCAGACGGAGGAGGCGTTGTCGCGCTTGTAC
AAGGGCAGGACGGTCAACATTGTGGGAGACATCAACGTGCTGTTTGCGCA
CAAAATAAAAATAAACAAGTGA

Coding sequence (CDS) from alignment at NODE_1193_length_12810_cov_3.289960:9128..10549-

>Gcaud1756.t1 ID=Gcaud1756.t1|Name=Gcaud1756.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1422bp|location=Sequence derived from alignment at NODE_1193_length_12810_cov_3.289960:9128..10549- (Gracilaria caudata M_176_S67 male)
CTGCCTCCCGCCGACAAGGACTTGCTCGGTCGCTACAAATCGCCCGTGCT
TCGCGCGTGGGCCGCCGCCATTGGCGCGTTTGAAAACGGCGCCGTGTATC
TTGCCGACGCGGCGCAGCTTATGACGCACAACACCAATAACGAGGCGGTG
GCCATCAAGGCCAACATGGCGCGCCTCAACAAGAACCTGGCCGAGTTTGC
ACGCCGAGAGACGCAACTGATCCGCGCGGCCGCCGAAGCGGCGCAGCGCT
TTGAACAGGCGCTGCGGCAGTACCGACTGCAGGACGACGCGTTGTGCGAC
TTTTACGCGCAGTTGCTGGCGCACGTGCGCAGCGAGCTGCCGCTGGTGTT
GCAACAGGCGGTACAACAAACGCGCTGCGAGCGCTTTGCACGCTGTGTGG
ACTATTATGGCGCGTTTTGTTCGTACGTGGGTCACGGCGGCGATGACGGC
GGCGTGTGTGCAGCGGTTCATGCCGTGATGCATAACGATGTGCACGCGTT
GACTGCGCCGCTCGAACGGCAGCCGTCGACGCACGGCGTGGATTGGGGAG
TGCACATGGACATGGACATGGACATGGCGTCGGCTGAACAAGCGCTGCCG
CGCGTACAGCCGCCCGAGTCGGCACAGGCGCCGATCGACTGGGACATCGA
GATCGGCGAGACGGGCATCGAGATCGAGGAGACGGGCATCGAGATCGAGG
AGAAGGGCACCGCCTCGCAACCAACTGAGAAGCACGAGCAGAACGACGAG
GAGAAGCTCGTGCACGCTGAACACGACGCCTCAGCTCAAGCGGCCGCCAT
TGACTGGAGTGCCGCCATGGGCGTGTTGAACGGCGCGAGCGAGCGCAGCG
AGGATGCGCCCGAAAGCGCTGAGCCATCCACCGCCACGCTGTGCGACGCC
GTTTTCCGCGAGCAATACCTCAACGATCTCATCGAACTGCAAGCGTTTCT
GACGCAGCGGCGCGCGGAGTTGAGGCGCATCGCCAACACGGACGTGGCGC
TGGCGTTACAACAGTCCAACTCGGCGCCGACGGAGCTCAAAGGCGTGGAT
GTGGATGCGGTGCACGACATGTGCGGCGCGGTGGACGACGCGATTGAGGC
GATTAACAGCGCGCAGACGAGGAAGCTTGTGGCGCTGCAAAGCAGTGACA
AGCTGCTGGAGCGCACGGCGAAGGGCGTGTTGGAGAAGAAGCACGCGGCG
GAGCGGACGAGAGGCGCGATTGATGTGCTGAGGAAACAGCGCGCGGCGGC
GGCGGTGGAGCTGAAGGAGGAGATGGCGGGCTTGGAACGCGTGGCGGAGC
AGACGAGGAGCGTGCAGAGGCAGACGGAGGAGGCGTTGTCGCGCTTGTAC
AAGGGCAGGACGGTCAACATTGTGGGAGACATCAACGTGCTGTTTGCGCA
CAAAATAAAAATAAACAAGTGA