Gcaud1753.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1753.t2
Unique NameGcaud1753.t2
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length229
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1193_length_12810_cov_3.289960contigNODE_1193_length_12810_cov_3.289960:5376..6062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4792.ETI36341
PFAMsDiphthamide_syn
Max annot lvl4776|Peronosporales
KEGG rclassRC00021,RC03180
KEGG koko:K07561
KEGG ReactionR10455
Evalue1.64e-87
EggNOG OGsCOG1736@1|root,KOG2648@2759|Eukaryota,3Q8M3@4776|Peronosporales
EC2.5.1.108
DescriptionPutative diphthamide synthesis protein
COG categoryJ
BRITEko00000,ko01000,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1753Gcaud1753Gracilaria caudata M_176_S67 malegeneNODE_1193_length_12810_cov_3.289960 5376..6650 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1753.t2.stop1Gcaud1753.t2.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1193_length_12810_cov_3.289960 5376..5378 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1753.t2.CDS1Gcaud1753.t2.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1193_length_12810_cov_3.289960 5376..6062 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1753.t2.exon1Gcaud1753.t2.exon1Gracilaria caudata M_176_S67 maleexonNODE_1193_length_12810_cov_3.289960 5376..6062 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1753.t2.start1Gcaud1753.t2.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1193_length_12810_cov_3.289960 6060..6062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1753.t2Gcaud1753.t2Gracilaria caudata M_176_S67 malepolypeptideNODE_1193_length_12810_cov_3.289960 5376..6062 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1753.t2 ID=Gcaud1753.t2|Name=Gcaud1753.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=229bp
LALVGTIQFVDSVHQLADEIRHHFRHVCVPQAKPLSPGELLGCTSPKIDG
VDVLVYVGDGRFHLESAMIANPHLRSLRYDPYSKRLTEETYDHAEMRALR
RKAVDEASSAQRFGVILGTLGRQGSPKILERVLKLMAEKSRSCFVVLLSE
ITPAKIQKLEQSGVEAWVQIACPRLSIDWGHGYGKRPLLTTYEAHVALGK
TEWREVYPMDFYSKKGGEWSNYYKEGKT*
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spliced messenger RNA

>Gcaud1753.t2 ID=Gcaud1753.t2|Name=Gcaud1753.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=687bp|location=Sequence derived from alignment at NODE_1193_length_12810_cov_3.289960:5376..6062- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGCGCTAGTGGGTACCATTCAGTTTGTCGATAGCGTTCATCAACTCGC
GGACGAGATCCGACATCACTTTCGCCATGTGTGCGTTCCGCAGGCCAAGC
CCTTGTCACCTGGTGAGCTTCTTGGCTGCACATCTCCCAAGATTGACGGC
GTGGATGTGCTTGTGTACGTCGGTGATGGCCGCTTCCACCTTGAGAGCGC
AATGATCGCGAACCCACATTTGCGCTCACTGCGCTACGACCCATACTCGA
AGAGACTCACTGAAGAGACGTACGATCACGCCGAAATGCGCGCTCTGCGG
CGAAAGGCTGTCGACGAGGCGAGCAGCGCACAAAGGTTTGGCGTCATTTT
GGGTACGCTTGGTCGACAGGGCTCGCCAAAGATTCTTGAGCGCGTGTTGA
AGTTGATGGCTGAAAAATCACGCAGCTGTTTCGTTGTTCTTCTTTCAGAA
ATAACGCCGGCGAAGATCCAGAAGCTGGAACAATCCGGCGTGGAAGCCTG
GGTGCAGATTGCCTGTCCGCGATTAAGCATCGACTGGGGACACGGCTATG
GGAAGCGACCACTACTAACTACGTACGAAGCGCATGTTGCGCTGGGTAAG
ACAGAATGGAGAGAGGTTTACCCGATGGATTTCTACTCGAAAAAGGGAGG
TGAATGGTCCAACTACTACAAAGAAGGGAAAACATAA
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protein sequence of Gcaud1753.t2

>Gcaud1753.t2 ID=Gcaud1753.t2|Name=Gcaud1753.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=229bp
LALVGTIQFVDSVHQLADEIRHHFRHVCVPQAKPLSPGELLGCTSPKIDG
VDVLVYVGDGRFHLESAMIANPHLRSLRYDPYSKRLTEETYDHAEMRALR
RKAVDEASSAQRFGVILGTLGRQGSPKILERVLKLMAEKSRSCFVVLLSE
ITPAKIQKLEQSGVEAWVQIACPRLSIDWGHGYGKRPLLTTYEAHVALGK
TEWREVYPMDFYSKKGGEWSNYYKEGKT*
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mRNA from alignment at NODE_1193_length_12810_cov_3.289960:5376..6062-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1753.t2 ID=Gcaud1753.t2|Name=Gcaud1753.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=687bp|location=Sequence derived from alignment at NODE_1193_length_12810_cov_3.289960:5376..6062- (Gracilaria caudata M_176_S67 male)
CTGGCGCTAGTGGGTACCATTCAGTTTGTCGATAGCGTTCATCAACTCGC
GGACGAGATCCGACATCACTTTCGCCATGTGTGCGTTCCGCAGGCCAAGC
CCTTGTCACCTGGTGAGCTTCTTGGCTGCACATCTCCCAAGATTGACGGC
GTGGATGTGCTTGTGTACGTCGGTGATGGCCGCTTCCACCTTGAGAGCGC
AATGATCGCGAACCCACATTTGCGCTCACTGCGCTACGACCCATACTCGA
AGAGACTCACTGAAGAGACGTACGATCACGCCGAAATGCGCGCTCTGCGG
CGAAAGGCTGTCGACGAGGCGAGCAGCGCACAAAGGTTTGGCGTCATTTT
GGGTACGCTTGGTCGACAGGGCTCGCCAAAGATTCTTGAGCGCGTGTTGA
AGTTGATGGCTGAAAAATCACGCAGCTGTTTCGTTGTTCTTCTTTCAGAA
ATAACGCCGGCGAAGATCCAGAAGCTGGAACAATCCGGCGTGGAAGCCTG
GGTGCAGATTGCCTGTCCGCGATTAAGCATCGACTGGGGACACGGCTATG
GGAAGCGACCACTACTAACTACGTACGAAGCGCATGTTGCGCTGGGTAAG
ACAGAATGGAGAGAGGTTTACCCGATGGATTTCTACTCGAAAAAGGGAGG
TGAATGGTCCAACTACTACAAAGAAGGGAAAACATAA
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Coding sequence (CDS) from alignment at NODE_1193_length_12810_cov_3.289960:5376..6062-

>Gcaud1753.t2 ID=Gcaud1753.t2|Name=Gcaud1753.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=687bp|location=Sequence derived from alignment at NODE_1193_length_12810_cov_3.289960:5376..6062- (Gracilaria caudata M_176_S67 male)
CTGGCGCTAGTGGGTACCATTCAGTTTGTCGATAGCGTTCATCAACTCGC
GGACGAGATCCGACATCACTTTCGCCATGTGTGCGTTCCGCAGGCCAAGC
CCTTGTCACCTGGTGAGCTTCTTGGCTGCACATCTCCCAAGATTGACGGC
GTGGATGTGCTTGTGTACGTCGGTGATGGCCGCTTCCACCTTGAGAGCGC
AATGATCGCGAACCCACATTTGCGCTCACTGCGCTACGACCCATACTCGA
AGAGACTCACTGAAGAGACGTACGATCACGCCGAAATGCGCGCTCTGCGG
CGAAAGGCTGTCGACGAGGCGAGCAGCGCACAAAGGTTTGGCGTCATTTT
GGGTACGCTTGGTCGACAGGGCTCGCCAAAGATTCTTGAGCGCGTGTTGA
AGTTGATGGCTGAAAAATCACGCAGCTGTTTCGTTGTTCTTCTTTCAGAA
ATAACGCCGGCGAAGATCCAGAAGCTGGAACAATCCGGCGTGGAAGCCTG
GGTGCAGATTGCCTGTCCGCGATTAAGCATCGACTGGGGACACGGCTATG
GGAAGCGACCACTACTAACTACGTACGAAGCGCATGTTGCGCTGGGTAAG
ACAGAATGGAGAGAGGTTTACCCGATGGATTTCTACTCGAAAAAGGGAGG
TGAATGGTCCAACTACTACAAAGAAGGGAAAACATAA
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