Gcaud1753.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1753.t1
Unique NameGcaud1753.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length400
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1193_length_12810_cov_3.289960contigNODE_1193_length_12810_cov_3.289960:5376..6650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42099.EPrPV00000020636
PFAMsDiphthamide_syn
Max annot lvl121069|Pythiales
Evalue2.25e-126
EggNOG OGsCOG1736@1|root,KOG2648@2759|Eukaryota,1MC1U@121069|Pythiales
DescriptionDiphthamide biosynthesis protein 1
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1753Gcaud1753Gracilaria caudata M_176_S67 malegeneNODE_1193_length_12810_cov_3.289960 5376..6650 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1753.t1Gcaud1753.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1193_length_12810_cov_3.289960 5376..6650 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1753.t1.stop1Gcaud1753.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1193_length_12810_cov_3.289960 5376..5378 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1753.t1.CDS1Gcaud1753.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1193_length_12810_cov_3.289960 5376..6180 -
Gcaud1753.t1.CDS2Gcaud1753.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1193_length_12810_cov_3.289960 6256..6650 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1753.t1.exon1Gcaud1753.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1193_length_12810_cov_3.289960 5376..6180 -
Gcaud1753.t1.exon2Gcaud1753.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1193_length_12810_cov_3.289960 6256..6650 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1753.t1.intron1Gcaud1753.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1193_length_12810_cov_3.289960 6181..6255 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1753.t1.start1Gcaud1753.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1193_length_12810_cov_3.289960 6648..6650 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1753.t1 ID=Gcaud1753.t1|Name=Gcaud1753.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=400bp
MEPPQPPPRPRREGRFVGKGLRRNAASDAAQSSSPASASAKTLTAKAPPK
ARPRFTQVPPSLLNDPQLRKDCEPLPSNYSFELPKTIHRIRQLSATRVAL
QMPDGLSMYATTIGDILRRHTAVDTVILGDVTCLVPVQQTVIPTLYVFVH
IAFDATHLKECLLQNFSRETSLALVGTIQFVDSVHQLADEIRHHFRHVCV
PQAKPLSPGELLGCTSPKIDGVDVLVYVGDGRFHLESAMIANPHLRSLRY
DPYSKRLTEETYDHAEMRALRRKAVDEASSAQRFGVILGTLGRQGSPKIL
ERVLKLMAEKSRSCFVVLLSEITPAKIQKLEQSGVEAWVQIACPRLSIDW
GHGYGKRPLLTTYEAHVALGKTEWREVYPMDFYSKKGGEWSNYYKEGKT*
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spliced messenger RNA

>Gcaud1753.t1 ID=Gcaud1753.t1|Name=Gcaud1753.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1200bp|location=Sequence derived from alignment at NODE_1193_length_12810_cov_3.289960:5376..6650- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCCGCCCCAGCCGCCACCGCGGCCGCGTCGAGAGGGTCGCTTCGT
CGGAAAGGGGCTTCGACGCAACGCCGCATCCGACGCAGCCCAGTCTTCCT
CACCCGCGTCTGCGTCTGCCAAAACGCTCACCGCGAAGGCGCCGCCAAAG
GCGCGGCCGAGATTCACTCAAGTGCCGCCGTCGCTGCTCAACGATCCGCA
GCTGCGCAAAGATTGCGAGCCGTTGCCCTCAAATTACTCGTTCGAACTGC
CCAAGACCATCCACCGAATTCGCCAGCTCAGCGCCACGCGCGTGGCGTTG
CAAATGCCGGACGGGCTGTCCATGTATGCCACCACCATTGGCGACATTCT
GCGTCGCCACACTGCCGTGGACACCGTCATTCTCGGCGACGTCACTTGTC
TGGTGCCCGTTCAACAAACGGTCATCCCCACGCTTTACGTCTTCGTGCAT
ATTGCGTTTGACGCCACTCACCTGAAAGAGTGTCTGTTGCAAAACTTTTC
GCGTGAAACCAGCCTGGCGCTAGTGGGTACCATTCAGTTTGTCGATAGCG
TTCATCAACTCGCGGACGAGATCCGACATCACTTTCGCCATGTGTGCGTT
CCGCAGGCCAAGCCCTTGTCACCTGGTGAGCTTCTTGGCTGCACATCTCC
CAAGATTGACGGCGTGGATGTGCTTGTGTACGTCGGTGATGGCCGCTTCC
ACCTTGAGAGCGCAATGATCGCGAACCCACATTTGCGCTCACTGCGCTAC
GACCCATACTCGAAGAGACTCACTGAAGAGACGTACGATCACGCCGAAAT
GCGCGCTCTGCGGCGAAAGGCTGTCGACGAGGCGAGCAGCGCACAAAGGT
TTGGCGTCATTTTGGGTACGCTTGGTCGACAGGGCTCGCCAAAGATTCTT
GAGCGCGTGTTGAAGTTGATGGCTGAAAAATCACGCAGCTGTTTCGTTGT
TCTTCTTTCAGAAATAACGCCGGCGAAGATCCAGAAGCTGGAACAATCCG
GCGTGGAAGCCTGGGTGCAGATTGCCTGTCCGCGATTAAGCATCGACTGG
GGACACGGCTATGGGAAGCGACCACTACTAACTACGTACGAAGCGCATGT
TGCGCTGGGTAAGACAGAATGGAGAGAGGTTTACCCGATGGATTTCTACT
CGAAAAAGGGAGGTGAATGGTCCAACTACTACAAAGAAGGGAAAACATAA
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protein sequence of Gcaud1753.t1

>Gcaud1753.t1 ID=Gcaud1753.t1|Name=Gcaud1753.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=400bp
MEPPQPPPRPRREGRFVGKGLRRNAASDAAQSSSPASASAKTLTAKAPPK
ARPRFTQVPPSLLNDPQLRKDCEPLPSNYSFELPKTIHRIRQLSATRVAL
QMPDGLSMYATTIGDILRRHTAVDTVILGDVTCLVPVQQTVIPTLYVFVH
IAFDATHLKECLLQNFSRETSLALVGTIQFVDSVHQLADEIRHHFRHVCV
PQAKPLSPGELLGCTSPKIDGVDVLVYVGDGRFHLESAMIANPHLRSLRY
DPYSKRLTEETYDHAEMRALRRKAVDEASSAQRFGVILGTLGRQGSPKIL
ERVLKLMAEKSRSCFVVLLSEITPAKIQKLEQSGVEAWVQIACPRLSIDW
GHGYGKRPLLTTYEAHVALGKTEWREVYPMDFYSKKGGEWSNYYKEGKT*
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mRNA from alignment at NODE_1193_length_12810_cov_3.289960:5376..6650-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1753.t1 ID=Gcaud1753.t1|Name=Gcaud1753.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1275bp|location=Sequence derived from alignment at NODE_1193_length_12810_cov_3.289960:5376..6650- (Gracilaria caudata M_176_S67 male)
ATGGAGCCGCCCCAGCCGCCACCGCGGCCGCGTCGAGAGGGTCGCTTCGT
CGGAAAGGGGCTTCGACGCAACGCCGCATCCGACGCAGCCCAGTCTTCCT
CACCCGCGTCTGCGTCTGCCAAAACGCTCACCGCGAAGGCGCCGCCAAAG
GCGCGGCCGAGATTCACTCAAGTGCCGCCGTCGCTGCTCAACGATCCGCA
GCTGCGCAAAGATTGCGAGCCGTTGCCCTCAAATTACTCGTTCGAACTGC
CCAAGACCATCCACCGAATTCGCCAGCTCAGCGCCACGCGCGTGGCGTTG
CAAATGCCGGACGGGCTGTCCATGTATGCCACCACCATTGGCGACATTCT
GCGTCGCCACACTGCCGTGGACACCGTCATTCTCGGCGACGTCACGTACG
GAGCTTGCTGCGTGGACGACTTATCCGCGCGCGCGCTCGGCTGCGATTTG
CTTGTTCATTACGGTCACAGTTGTCTGGTGCCCGTTCAACAAACGGTCAT
CCCCACGCTTTACGTCTTCGTGCATATTGCGTTTGACGCCACTCACCTGA
AAGAGTGTCTGTTGCAAAACTTTTCGCGTGAAACCAGCCTGGCGCTAGTG
GGTACCATTCAGTTTGTCGATAGCGTTCATCAACTCGCGGACGAGATCCG
ACATCACTTTCGCCATGTGTGCGTTCCGCAGGCCAAGCCCTTGTCACCTG
GTGAGCTTCTTGGCTGCACATCTCCCAAGATTGACGGCGTGGATGTGCTT
GTGTACGTCGGTGATGGCCGCTTCCACCTTGAGAGCGCAATGATCGCGAA
CCCACATTTGCGCTCACTGCGCTACGACCCATACTCGAAGAGACTCACTG
AAGAGACGTACGATCACGCCGAAATGCGCGCTCTGCGGCGAAAGGCTGTC
GACGAGGCGAGCAGCGCACAAAGGTTTGGCGTCATTTTGGGTACGCTTGG
TCGACAGGGCTCGCCAAAGATTCTTGAGCGCGTGTTGAAGTTGATGGCTG
AAAAATCACGCAGCTGTTTCGTTGTTCTTCTTTCAGAAATAACGCCGGCG
AAGATCCAGAAGCTGGAACAATCCGGCGTGGAAGCCTGGGTGCAGATTGC
CTGTCCGCGATTAAGCATCGACTGGGGACACGGCTATGGGAAGCGACCAC
TACTAACTACGTACGAAGCGCATGTTGCGCTGGGTAAGACAGAATGGAGA
GAGGTTTACCCGATGGATTTCTACTCGAAAAAGGGAGGTGAATGGTCCAA
CTACTACAAAGAAGGGAAAACATAA
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Coding sequence (CDS) from alignment at NODE_1193_length_12810_cov_3.289960:5376..6650-

>Gcaud1753.t1 ID=Gcaud1753.t1|Name=Gcaud1753.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1200bp|location=Sequence derived from alignment at NODE_1193_length_12810_cov_3.289960:5376..6650- (Gracilaria caudata M_176_S67 male)
ATGGAGCCGCCCCAGCCGCCACCGCGGCCGCGTCGAGAGGGTCGCTTCGT
CGGAAAGGGGCTTCGACGCAACGCCGCATCCGACGCAGCCCAGTCTTCCT
CACCCGCGTCTGCGTCTGCCAAAACGCTCACCGCGAAGGCGCCGCCAAAG
GCGCGGCCGAGATTCACTCAAGTGCCGCCGTCGCTGCTCAACGATCCGCA
GCTGCGCAAAGATTGCGAGCCGTTGCCCTCAAATTACTCGTTCGAACTGC
CCAAGACCATCCACCGAATTCGCCAGCTCAGCGCCACGCGCGTGGCGTTG
CAAATGCCGGACGGGCTGTCCATGTATGCCACCACCATTGGCGACATTCT
GCGTCGCCACACTGCCGTGGACACCGTCATTCTCGGCGACGTCACTTGTC
TGGTGCCCGTTCAACAAACGGTCATCCCCACGCTTTACGTCTTCGTGCAT
ATTGCGTTTGACGCCACTCACCTGAAAGAGTGTCTGTTGCAAAACTTTTC
GCGTGAAACCAGCCTGGCGCTAGTGGGTACCATTCAGTTTGTCGATAGCG
TTCATCAACTCGCGGACGAGATCCGACATCACTTTCGCCATGTGTGCGTT
CCGCAGGCCAAGCCCTTGTCACCTGGTGAGCTTCTTGGCTGCACATCTCC
CAAGATTGACGGCGTGGATGTGCTTGTGTACGTCGGTGATGGCCGCTTCC
ACCTTGAGAGCGCAATGATCGCGAACCCACATTTGCGCTCACTGCGCTAC
GACCCATACTCGAAGAGACTCACTGAAGAGACGTACGATCACGCCGAAAT
GCGCGCTCTGCGGCGAAAGGCTGTCGACGAGGCGAGCAGCGCACAAAGGT
TTGGCGTCATTTTGGGTACGCTTGGTCGACAGGGCTCGCCAAAGATTCTT
GAGCGCGTGTTGAAGTTGATGGCTGAAAAATCACGCAGCTGTTTCGTTGT
TCTTCTTTCAGAAATAACGCCGGCGAAGATCCAGAAGCTGGAACAATCCG
GCGTGGAAGCCTGGGTGCAGATTGCCTGTCCGCGATTAAGCATCGACTGG
GGACACGGCTATGGGAAGCGACCACTACTAACTACGTACGAAGCGCATGT
TGCGCTGGGTAAGACAGAATGGAGAGAGGTTTACCCGATGGATTTCTACT
CGAAAAAGGGAGGTGAATGGTCCAACTACTACAAAGAAGGGAAAACATAA
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