Gcaud1752.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1752.t1
Unique Name	Gcaud1752.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	562

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1193_length_12810_cov_3.289960	contig	NODE_1193_length_12810_cov_3.289960:3142..4827 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706753.1
Preferred name	SUP35
PFAMs	GTP_EFTU,GTP_EFTU_D2,GTP_EFTU_D3
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03267
KEGG Pathway	ko03015,map03015
GOs	GO:0000166,GO:0000287,GO:0000288,GO:0000956,GO:0001882,GO:0001883,GO:0002181,GO:0002184,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003747,GO:0003824,GO:0003924,GO:0005085,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006415,GO:0006518,GO:0006725,GO:0006807,GO:0008022,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0018444,GO:0019001,GO:0019003,GO:0019222,GO:0019439,GO:0019538,GO:0019899,GO:0022411,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0034655,GO:0035639,GO:0035770,GO:0036094,GO:0036464,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0046872,GO:0048519,GO:0050789,GO:0051020,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0098772,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Evalue	5.35e-198
EggNOG OGs	COG5256@1\|root,KOG0459@2759\|Eukaryota
Description	cytoplasmic translational termination
COG category	J
BRITE	ko00000,ko00001,ko03012,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1752	Gcaud1752	Gracilaria caudata M_176_S67 male	gene	NODE_1193_length_12810_cov_3.289960 3142..4827 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1752.t1.start1	Gcaud1752.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1193_length_12810_cov_3.289960 3142..3144 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1752.t1.CDS1	Gcaud1752.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1193_length_12810_cov_3.289960 3142..4827 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1752.t1.exon1	Gcaud1752.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1193_length_12810_cov_3.289960 3142..4827 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1752.t1.stop1	Gcaud1752.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1193_length_12810_cov_3.289960 4825..4827 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1752.t1	Gcaud1752.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1193_length_12810_cov_3.289960 3142..4827 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1193_length_12810_cov_3.289960:3142..4827+
coding sequence from alignment at NODE_1193_length_12810_cov_3.289960:3142..4827+

mRNA sequence

>Gcaud1752.t1 ID=Gcaud1752.t1|Name=Gcaud1752.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=562bp
MNPQASEFIPSWLATTASQPPPPPPQQQQQPPQTQSSWEDEDAAPASTEP
PVQQMAAAKISEGPVPLPAPSPPEGAPKQNKAVSRASAEKSSRPEKVDEA
KGNHDAKADANHFDSSKVDLDEKKPLNVVLLGHVDAGKSTISGHLLVLTG
NVDERTMEKYEKEAKALNRESWKFAFALDTSEQEREKGKTEECGQASFTT
ETRRFTILDAPGHKNYVPHMIGGASQADIGILVISARKGEFETGFERGGQ
TREHAMLAKTSGVRQMVVVINKLDDPSVINPDGSWSQERFMECKKKLEPY
LKNVGWNPKGLVWIPVSGLTGDNLKNKPTKATCPWYDGESLLDTLEHLRP
PERLLNGPVKMPISEKHKEMGTMVMGKLESGVIQVNDSLVMMPNRVEVMV
DSVQLEGSTAQAAEPGDVVRLRLKGVDEEDVRVGFVLCSPRNLVSYTSSF
IAKLMILEHKSIICAGYSAVIHLHAAVEEVIIDQLLAELNRAGKAKQKHP
KFVKPGMKCLARLRTTQPVCVEPYDVFPQLGRFMIRDEGKTIAVGTVARL
QSDSAASKAGG*

spliced messenger RNA

>Gcaud1752.t1 ID=Gcaud1752.t1|Name=Gcaud1752.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1686bp|location=Sequence derived from alignment at NODE_1193_length_12810_cov_3.289960:3142..4827+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCCGCAAGCGAGCGAATTCATTCCATCCTGGCTGgccaccaccgc
ctcccagccgccgccgcccccgccgcagcagcagcaacagccgccgcAGA
CACAGAGCTCGTGGGAGGATGAGGACGCCGCCCCCGCTTCCACCGAGCCC
CCCGTACAGCAAATGGCCGCCGCAAAGATCTCGGAGGGGCCCGTTCCACT
TCCCGCTCCCAGTCCACCCGAGGGCGCGCCCAAGCAAAACAAGGCTGTTT
CTCGTGCCAGCGCGGAGAAGTCGTCGCGCCCCGAGAAAGTGGACGAAGCC
AAAGGTAACCACGACGCCAAGGCGGACGCGAACCACTTCGATTCGTCCAA
GGTCGATTTGGATGAGAAGAAGCCGCTCAACGTGGTACTACTCGGTCATG
TCGACGCTGGCAAGAGCACCATATCCGGGCATTTGCTCGTCCTCACGGGC
AATGTGGACGAGCGAACCATGGAGAAGTACGAGAAGGAGGCAAAGGCTCT
GAATCGCGAGAGCTGGAAATTCGCTTTTGCCCTGGATACCTCGGAACAGG
AGAGAGAAAAGGGAAAGACCGAGGAGTGTGGTCAAGCCAGCTTCACCACG
GAGACGCGACGATTCACTATCCTCGATGCGCCTGGTCATAAGAACTACGT
ACCTCATATGATAGGAGGTGCGTCTCAGGCAGACATCGGAATTTTGGTCA
TTTCAGCGAGAAAGGGAGAGTTTGAGACCGGCTTTGAAAGGGGAGGCCAA
ACAAGGGAGCATGCCATGTTGGCTAAAACATCCGGCGTTCGACAGATGGT
TGTCGTTATCAACAAGCTGGATGATCCAAGTGTCATCAACCCTGATGGAT
CGTGGAGCCAAGAGCGCTTCATGGAATGCAAGAAGAAGCTTGAACCCTAT
CTTAAGAACGTCGGTTGGAACCCGAAGGGCCTGGTGTGGATCCCCGTTTC
AGGTTTGACAGGAGATAACCTCAAGAACAAGCCTACCAAAGCTACATGCC
CATGGTACGATGGTGAGTCGCTGCTCGACACACTAGAACATTTGCGCCCC
CCGGAGCGTCTTCTAAACGGGCCCGTTAAAATGCCAATCTCGGAGAAGCA
CAAGGAGATGGGTACGATGGTCATGGGTAAGCTGGAGTCGGGAGTCATTC
AAGTGAATGATTCTCTTGTCATGATGCCGAATCGAGTGGAAGTAATGGTT
GACTCCGTTCAGCTGGAGGGCTCTACAGCTCAGGCTGCAGAGCCGGGTGA
CGTCGTTCGGCTTCGCTTGAAAGGAGTAGATGAAGAAGATGTTCGAGTAG
GTTTCGTGCTGTGTTCACCGCGAAATTTAGTTTCGTACACAAGTTCGTTT
ATCGCAAAGTTGATGATTCTGGAGCACAAGAGCATCATTTGCGCAGGCTA
TTCGGCTGTGATTCACCTCCACGCAGCCGTTGAAGAAGTTATTATTGATC
AGTTGCTCGCCGAGCTCAACAGAGCTGGAAAGGCGAAACAAAAACATCCC
AAGTTTGTGAAACCCGGGATGAAATGTTTGGCGCGGCTTAGAACTACACA
ACCTGTTTGTGTGGAACCATACGATGTCTTCCCGCAACTGGGTCGGTTCA
TGATCCGAGATGAAGGGAAGACAATTGCAGTTGGAACAGTTGCTAGATTG
CAATCGGATTCAGCAGCTTCAAAGGCAGGCGGATAA

protein sequence of Gcaud1752.t1

>Gcaud1752.t1 ID=Gcaud1752.t1|Name=Gcaud1752.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=562bp
MNPQASEFIPSWLATTASQPPPPPPQQQQQPPQTQSSWEDEDAAPASTEP
PVQQMAAAKISEGPVPLPAPSPPEGAPKQNKAVSRASAEKSSRPEKVDEA
KGNHDAKADANHFDSSKVDLDEKKPLNVVLLGHVDAGKSTISGHLLVLTG
NVDERTMEKYEKEAKALNRESWKFAFALDTSEQEREKGKTEECGQASFTT
ETRRFTILDAPGHKNYVPHMIGGASQADIGILVISARKGEFETGFERGGQ
TREHAMLAKTSGVRQMVVVINKLDDPSVINPDGSWSQERFMECKKKLEPY
LKNVGWNPKGLVWIPVSGLTGDNLKNKPTKATCPWYDGESLLDTLEHLRP
PERLLNGPVKMPISEKHKEMGTMVMGKLESGVIQVNDSLVMMPNRVEVMV
DSVQLEGSTAQAAEPGDVVRLRLKGVDEEDVRVGFVLCSPRNLVSYTSSF
IAKLMILEHKSIICAGYSAVIHLHAAVEEVIIDQLLAELNRAGKAKQKHP
KFVKPGMKCLARLRTTQPVCVEPYDVFPQLGRFMIRDEGKTIAVGTVARL
QSDSAASKAGG*

mRNA from alignment at NODE_1193_length_12810_cov_3.289960:3142..4827+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1752.t1 ID=Gcaud1752.t1|Name=Gcaud1752.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1686bp|location=Sequence derived from alignment at NODE_1193_length_12810_cov_3.289960:3142..4827+ (Gracilaria caudata M_176_S67 male)
ATGAATCCGCAAGCGAGCGAATTCATTCCATCCTGGCTGgccaccaccgc
ctcccagccgccgccgcccccgccgcagcagcagcaacagccgccgcAGA
CACAGAGCTCGTGGGAGGATGAGGACGCCGCCCCCGCTTCCACCGAGCCC
CCCGTACAGCAAATGGCCGCCGCAAAGATCTCGGAGGGGCCCGTTCCACT
TCCCGCTCCCAGTCCACCCGAGGGCGCGCCCAAGCAAAACAAGGCTGTTT
CTCGTGCCAGCGCGGAGAAGTCGTCGCGCCCCGAGAAAGTGGACGAAGCC
AAAGGTAACCACGACGCCAAGGCGGACGCGAACCACTTCGATTCGTCCAA
GGTCGATTTGGATGAGAAGAAGCCGCTCAACGTGGTACTACTCGGTCATG
TCGACGCTGGCAAGAGCACCATATCCGGGCATTTGCTCGTCCTCACGGGC
AATGTGGACGAGCGAACCATGGAGAAGTACGAGAAGGAGGCAAAGGCTCT
GAATCGCGAGAGCTGGAAATTCGCTTTTGCCCTGGATACCTCGGAACAGG
AGAGAGAAAAGGGAAAGACCGAGGAGTGTGGTCAAGCCAGCTTCACCACG
GAGACGCGACGATTCACTATCCTCGATGCGCCTGGTCATAAGAACTACGT
ACCTCATATGATAGGAGGTGCGTCTCAGGCAGACATCGGAATTTTGGTCA
TTTCAGCGAGAAAGGGAGAGTTTGAGACCGGCTTTGAAAGGGGAGGCCAA
ACAAGGGAGCATGCCATGTTGGCTAAAACATCCGGCGTTCGACAGATGGT
TGTCGTTATCAACAAGCTGGATGATCCAAGTGTCATCAACCCTGATGGAT
CGTGGAGCCAAGAGCGCTTCATGGAATGCAAGAAGAAGCTTGAACCCTAT
CTTAAGAACGTCGGTTGGAACCCGAAGGGCCTGGTGTGGATCCCCGTTTC
AGGTTTGACAGGAGATAACCTCAAGAACAAGCCTACCAAAGCTACATGCC
CATGGTACGATGGTGAGTCGCTGCTCGACACACTAGAACATTTGCGCCCC
CCGGAGCGTCTTCTAAACGGGCCCGTTAAAATGCCAATCTCGGAGAAGCA
CAAGGAGATGGGTACGATGGTCATGGGTAAGCTGGAGTCGGGAGTCATTC
AAGTGAATGATTCTCTTGTCATGATGCCGAATCGAGTGGAAGTAATGGTT
GACTCCGTTCAGCTGGAGGGCTCTACAGCTCAGGCTGCAGAGCCGGGTGA
CGTCGTTCGGCTTCGCTTGAAAGGAGTAGATGAAGAAGATGTTCGAGTAG
GTTTCGTGCTGTGTTCACCGCGAAATTTAGTTTCGTACACAAGTTCGTTT
ATCGCAAAGTTGATGATTCTGGAGCACAAGAGCATCATTTGCGCAGGCTA
TTCGGCTGTGATTCACCTCCACGCAGCCGTTGAAGAAGTTATTATTGATC
AGTTGCTCGCCGAGCTCAACAGAGCTGGAAAGGCGAAACAAAAACATCCC
AAGTTTGTGAAACCCGGGATGAAATGTTTGGCGCGGCTTAGAACTACACA
ACCTGTTTGTGTGGAACCATACGATGTCTTCCCGCAACTGGGTCGGTTCA
TGATCCGAGATGAAGGGAAGACAATTGCAGTTGGAACAGTTGCTAGATTG
CAATCGGATTCAGCAGCTTCAAAGGCAGGCGGATAA

Coding sequence (CDS) from alignment at NODE_1193_length_12810_cov_3.289960:3142..4827+

>Gcaud1752.t1 ID=Gcaud1752.t1|Name=Gcaud1752.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1686bp|location=Sequence derived from alignment at NODE_1193_length_12810_cov_3.289960:3142..4827+ (Gracilaria caudata M_176_S67 male)
ATGAATCCGCAAGCGAGCGAATTCATTCCATCCTGGCTGgccaccaccgc
ctcccagccgccgccgcccccgccgcagcagcagcaacagccgccgcAGA
CACAGAGCTCGTGGGAGGATGAGGACGCCGCCCCCGCTTCCACCGAGCCC
CCCGTACAGCAAATGGCCGCCGCAAAGATCTCGGAGGGGCCCGTTCCACT
TCCCGCTCCCAGTCCACCCGAGGGCGCGCCCAAGCAAAACAAGGCTGTTT
CTCGTGCCAGCGCGGAGAAGTCGTCGCGCCCCGAGAAAGTGGACGAAGCC
AAAGGTAACCACGACGCCAAGGCGGACGCGAACCACTTCGATTCGTCCAA
GGTCGATTTGGATGAGAAGAAGCCGCTCAACGTGGTACTACTCGGTCATG
TCGACGCTGGCAAGAGCACCATATCCGGGCATTTGCTCGTCCTCACGGGC
AATGTGGACGAGCGAACCATGGAGAAGTACGAGAAGGAGGCAAAGGCTCT
GAATCGCGAGAGCTGGAAATTCGCTTTTGCCCTGGATACCTCGGAACAGG
AGAGAGAAAAGGGAAAGACCGAGGAGTGTGGTCAAGCCAGCTTCACCACG
GAGACGCGACGATTCACTATCCTCGATGCGCCTGGTCATAAGAACTACGT
ACCTCATATGATAGGAGGTGCGTCTCAGGCAGACATCGGAATTTTGGTCA
TTTCAGCGAGAAAGGGAGAGTTTGAGACCGGCTTTGAAAGGGGAGGCCAA
ACAAGGGAGCATGCCATGTTGGCTAAAACATCCGGCGTTCGACAGATGGT
TGTCGTTATCAACAAGCTGGATGATCCAAGTGTCATCAACCCTGATGGAT
CGTGGAGCCAAGAGCGCTTCATGGAATGCAAGAAGAAGCTTGAACCCTAT
CTTAAGAACGTCGGTTGGAACCCGAAGGGCCTGGTGTGGATCCCCGTTTC
AGGTTTGACAGGAGATAACCTCAAGAACAAGCCTACCAAAGCTACATGCC
CATGGTACGATGGTGAGTCGCTGCTCGACACACTAGAACATTTGCGCCCC
CCGGAGCGTCTTCTAAACGGGCCCGTTAAAATGCCAATCTCGGAGAAGCA
CAAGGAGATGGGTACGATGGTCATGGGTAAGCTGGAGTCGGGAGTCATTC
AAGTGAATGATTCTCTTGTCATGATGCCGAATCGAGTGGAAGTAATGGTT
GACTCCGTTCAGCTGGAGGGCTCTACAGCTCAGGCTGCAGAGCCGGGTGA
CGTCGTTCGGCTTCGCTTGAAAGGAGTAGATGAAGAAGATGTTCGAGTAG
GTTTCGTGCTGTGTTCACCGCGAAATTTAGTTTCGTACACAAGTTCGTTT
ATCGCAAAGTTGATGATTCTGGAGCACAAGAGCATCATTTGCGCAGGCTA
TTCGGCTGTGATTCACCTCCACGCAGCCGTTGAAGAAGTTATTATTGATC
AGTTGCTCGCCGAGCTCAACAGAGCTGGAAAGGCGAAACAAAAACATCCC
AAGTTTGTGAAACCCGGGATGAAATGTTTGGCGCGGCTTAGAACTACACA
ACCTGTTTGTGTGGAACCATACGATGTCTTCCCGCAACTGGGTCGGTTCA
TGATCCGAGATGAAGGGAAGACAATTGCAGTTGGAACAGTTGCTAGATTG
CAATCGGATTCAGCAGCTTCAAAGGCAGGCGGATAA