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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 1142394.PSMK_27300 |
| Preferred name | queH |
| PFAMs | DUF208 |
| Max annot lvl | 2|Bacteria |
| KEGG ko | ko:K03470,ko:K09765 |
| KEGG Pathway | ko03030,map03030 |
| Evalue | 3.9e-16 |
| EggNOG OGs | COG1636@1|root,COG1636@2|Bacteria |
| EC | 1.17.99.6,3.1.26.4 |
| Description | queuosine biosynthetic process |
| COG category | C |
| BRITE | ko00000,ko00001,ko01000,ko03016,ko03032 |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1745.t1.start1 | Gcaud1745.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_3966_length_2730_cov_13.267905 2504..2506 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1745.t1 ID=Gcaud1745.t1|Name=Gcaud1745.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=835bp MKMSGGLFLVVWGCCTALAISAQVLSTDGLKEAKVNGVSMFMKSGPHRSL FGKAAITPAPSTAFKGSVHPRILFDGSGWEEMLERYSNEDTFDMKTSWSH FSRRTSLHLAESNPILKRLIEMERNGETAVYSGKEDLSSASREQLDELEQ LASHVMNMSEGYSQSFFICALWSSVNEKVMKERGREESFMKTSVEDCVKA SVAWAKVLLAHRAVNCAGKCTSGASGSRAFLWDEERWFQVQNDWYSAGAS LALTLDVLYDRFADEERRVVVSALAMLMYKQTSWGTAVESSRNSPNAAQH PHRIFSNWALYHGHLYITNLVLEGEHDFDAYASAVLSSSGVDGFNAGLDK RFTALIRAYMTHAVYPDGATFEDAYTYFIALREGSLALVAAERRGLGMID TERFRGLIHNAAQMMEPWQCARIVGHSSGGGLSYPAWAALFKYAYPEGAL PQMVWKQRMGKHFKNNNPCRIQWVQNLMHVLVMGMEHGSSTYAESPQGLE EEFKKHFALSYLSPRRGLLIARSSEAEDALYVHFDARPDAMFPGHDNADR GVFTLTAFKTAWIDDYAWRYNIDSRKHSLLHVDGLAQDAKAPSVHMVRTE DSGTQVIAVANLTYAYNVEWARNWPYDKAPMARVTVYDDEGRERQVGKMF DVAEYGHPHDFGWPADDDGEDLGFTREGFNMHGDADVGFRGMWTWKRAYR ETPLAWMVRSVILNRAGGGPGFFMVVDSARVSGAAVKNKFESYLALGDKV KVESESSSCEGNRCRIVLVDDGIAQVDVHVVTIGKSASYRTETFKSDAEH TMLIVRSDNEKEEVFWMAFHAHLGEPERFSMEPIS back to topspliced messenger RNA >Gcaud1745.t1 ID=Gcaud1745.t1|Name=Gcaud1745.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2505bp|location=Sequence derived from alignment at NODE_3966_length_2730_cov_13.267905:2..2506- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGAAGATGAGTGGAGGATTGTTCTTGGTAGTGTGGGGTTGTTGTACAGC ATTGGCGATATCGGCGCAAGTGTTATCTACGGATGGATTGAAGGAAGCGA AGGTGAATGGTGTGAGCATGTTCATGAAGTCCGGACCGCATCGCTCGCTG TTTGGGAAGGCGGCCATTACTCCTGCTCCATCGACTGCGTTTAAGGGTAG TGTTCATCCTCGGATACTGTTTGACGGGAGCGGATGGGAGGAGATGTTAG AACGTTATTCGAACGAGGATACTTTTGACATGAAGACATCATGGTCTCAC TTTTCTCGGCGGACGTCATTGCATCTGGCGGAATCGAATCCGATTCTAAA GCGGCTGATCGAAATGGAACGTAATGGGGAAACGGCAGTGTACAGTGGGA AGGAGGATTTGTCGTCTGCGTCGCGGGAGCAGTTGGATGAGCTCGAACAG CTGGCGAGTCACGTGATGAACATGTCGGAAGGGTACTCACAGAGCTTCTT TATATGCGCGTTGTGGAGCAGTGTGAACGAGAAGGTGATGAAGGAACGGG GTCGGGAGGAGTCGTTCATGAAGACGAGTGTGGAAGACTGCGTGAAGGCA TCTGTGGCATGGGCGAAGGTGCTGCTTGCGCATCGGGCGGTGAACTGCGC GGGAAAGTGTACGAGTGGAGCAAGTGGGAGTCGTGCGTTCCTGTGGGACG AGGAGCGTTGGTTCCAGGTTCAGAATGACTGGTACTCTGCCGGAGCTAGT CTGGCGCTCACTTTGGACGTGCTGTACGACCGATTCGCAGATGAGGAACG ACGAGTGGTGGTGAGCGCATTGGCGATGCTGATGTACAAGCAGACTTCGT GGGGAACGGCAGTGGAAAGCTCACGCAACTCACCGAACGCAGCGCAACAC CCGCACCGGATATTCAGCAACTGGGCGTTGTACCATGGACATCTGTACAT TACTAACTTGGTGTTGGAGGGAGAGCACGACTTCGATGCGTACGCGTCTG CTGTGTTGTCTTCGAGCGGAGTGGACGGGTTCAACGCGGGTCTGGATAAG CGGTTCACGGCGTTGATCAGGGCGTACATGACGCATGCTGTGTATCCGGA CGGAGCGACGTTTGAGGACGCGTACACGTACTTCATTGCTCTACGGGAGG GGTCGCTGGCGCTGGTTGCGGCTGAACGGCGGGGACTGGGGATGATTGAC ACGGAGCGATTCCGAGGTCTGATCCACAACGCAGCCCAGATGATGGAGCC GTGGCAATGTGCGCGGATCGTGGGTCACTCGTCTGGAGGAGGACTGTCGT ATCCGGCTTGGGCTGCGCTTTTCAAGTACGCGTACCCCGAGGGCGCTCTG CCGCAAATGGTTTGGAAGCAGAGGATGGGGAAGCATTTCAAGAACAACAA CCCGTGTCGGATCCAGTGGGTGCAGAACCTGATGCACGTTCTTGTGATGG GAATGGAGCACGGAAGTTCGACGTACGCGGAGTCGCCGCAGGGTCTCGAA GAGGAGTTCAAGAAGCACTTTGCGCTGTCGTACTTGAGCCCTCGTCGGGG GCTGCTTATTGCGAGGAGCAGTGAGGCGGAGGACGCGCTGTACGTGCACT TTGATGCGCGCCCCGACGCGATGTTCCCCGGGCACGACAACGCTGATCGC GGAGTGTTTACGCTGACGGCGTTCAAGACTGCGTGGATCGACGACTATGC GTGGAGGTACAACATCGACTCGAGAAAGCATTCGCTGCTGCATGTGGACG GTTTGGCGCAGGACGCCAAGGCACCATCGGTACACATGGTTCGAACGGAG GACAGTGGCACGCAGGTGATTGCAGTAGCGAACCTGACTTATGCTTATAA CGTGGAATGGGCGAGGAACTGGCCGTATGACAAGGCGCCCATGGCGAGGG TGACGGTGTACGACGATGAGGGGAGAGAGAGGCAGGTGGGAAAAATGTTT GATGTGGCGGAATACGGACACCCGCACGACTTTGGATGGCCTGCTGATGA CGATGGGGAGGACCTGGGATTCACTCGGGAGGGGTTCAACATGCACGGGG ATGCGGATGTAGGGTTCCGAGGTATGTGGACGTGGAAACGGGCGTACCGA GAGACACCGCTGGCGTGGATGGTACGGTCTGTGATTCTGAACCGGGCAGG AGGCGGGCCGGGGTTTTTCATGGTTGTGGACTCTGCGAGAGTGTCTGGGG CGGCAGTGAAGAACAAATTCGAATCGTACCTTGCACTTGGAGACAAGGTG AAGGTGGAGAGCGAATCGTCGAGTTGCGAAGGGAATCGGTGCAGGATCGT GTTAGTGGACGATGGGATTGCACAGGTGGATGTGCATGTTGTGACGATTG GGAAATCGGCATCGTATCGGACGGAGACTTTCAAGAGCGACGCGGAACAC ACAATGCTTATTGTACGAAGCGACAACGAGAAGGAGGAAGTGTTTTGGAT GGCATTCCATGCTCACCTGGGAGAACCAGAGCGCTTTTCGATGGAACCGA TTTCG back to topprotein sequence of Gcaud1745.t1 >Gcaud1745.t1 ID=Gcaud1745.t1|Name=Gcaud1745.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=835bp
MKMSGGLFLVVWGCCTALAISAQVLSTDGLKEAKVNGVSMFMKSGPHRSL FGKAAITPAPSTAFKGSVHPRILFDGSGWEEMLERYSNEDTFDMKTSWSH FSRRTSLHLAESNPILKRLIEMERNGETAVYSGKEDLSSASREQLDELEQ LASHVMNMSEGYSQSFFICALWSSVNEKVMKERGREESFMKTSVEDCVKA SVAWAKVLLAHRAVNCAGKCTSGASGSRAFLWDEERWFQVQNDWYSAGAS LALTLDVLYDRFADEERRVVVSALAMLMYKQTSWGTAVESSRNSPNAAQH PHRIFSNWALYHGHLYITNLVLEGEHDFDAYASAVLSSSGVDGFNAGLDK RFTALIRAYMTHAVYPDGATFEDAYTYFIALREGSLALVAAERRGLGMID TERFRGLIHNAAQMMEPWQCARIVGHSSGGGLSYPAWAALFKYAYPEGAL PQMVWKQRMGKHFKNNNPCRIQWVQNLMHVLVMGMEHGSSTYAESPQGLE EEFKKHFALSYLSPRRGLLIARSSEAEDALYVHFDARPDAMFPGHDNADR GVFTLTAFKTAWIDDYAWRYNIDSRKHSLLHVDGLAQDAKAPSVHMVRTE DSGTQVIAVANLTYAYNVEWARNWPYDKAPMARVTVYDDEGRERQVGKMF DVAEYGHPHDFGWPADDDGEDLGFTREGFNMHGDADVGFRGMWTWKRAYR ETPLAWMVRSVILNRAGGGPGFFMVVDSARVSGAAVKNKFESYLALGDKV KVESESSSCEGNRCRIVLVDDGIAQVDVHVVTIGKSASYRTETFKSDAEH TMLIVRSDNEKEEVFWMAFHAHLGEPERFSMEPIS back to topmRNA from alignment at NODE_3966_length_2730_cov_13.267905:2..2506- Legend: CDSpolypeptideexonstart_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1745.t1 ID=Gcaud1745.t1|Name=Gcaud1745.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2505bp|location=Sequence derived from alignment at NODE_3966_length_2730_cov_13.267905:2..2506- (Gracilaria caudata M_176_S67 male) ATGAAGATGAGTGGAGGATTGTTCTTGGTAGTGTGGGGTTGTTGTACAGC
ATTGGCGATATCGGCGCAAGTGTTATCTACGGATGGATTGAAGGAAGCGA
AGGTGAATGGTGTGAGCATGTTCATGAAGTCCGGACCGCATCGCTCGCTG
TTTGGGAAGGCGGCCATTACTCCTGCTCCATCGACTGCGTTTAAGGGTAG
TGTTCATCCTCGGATACTGTTTGACGGGAGCGGATGGGAGGAGATGTTAG
AACGTTATTCGAACGAGGATACTTTTGACATGAAGACATCATGGTCTCAC
TTTTCTCGGCGGACGTCATTGCATCTGGCGGAATCGAATCCGATTCTAAA
GCGGCTGATCGAAATGGAACGTAATGGGGAAACGGCAGTGTACAGTGGGA
AGGAGGATTTGTCGTCTGCGTCGCGGGAGCAGTTGGATGAGCTCGAACAG
CTGGCGAGTCACGTGATGAACATGTCGGAAGGGTACTCACAGAGCTTCTT
TATATGCGCGTTGTGGAGCAGTGTGAACGAGAAGGTGATGAAGGAACGGG
GTCGGGAGGAGTCGTTCATGAAGACGAGTGTGGAAGACTGCGTGAAGGCA
TCTGTGGCATGGGCGAAGGTGCTGCTTGCGCATCGGGCGGTGAACTGCGC
GGGAAAGTGTACGAGTGGAGCAAGTGGGAGTCGTGCGTTCCTGTGGGACG
AGGAGCGTTGGTTCCAGGTTCAGAATGACTGGTACTCTGCCGGAGCTAGT
CTGGCGCTCACTTTGGACGTGCTGTACGACCGATTCGCAGATGAGGAACG
ACGAGTGGTGGTGAGCGCATTGGCGATGCTGATGTACAAGCAGACTTCGT
GGGGAACGGCAGTGGAAAGCTCACGCAACTCACCGAACGCAGCGCAACAC
CCGCACCGGATATTCAGCAACTGGGCGTTGTACCATGGACATCTGTACAT
TACTAACTTGGTGTTGGAGGGAGAGCACGACTTCGATGCGTACGCGTCTG
CTGTGTTGTCTTCGAGCGGAGTGGACGGGTTCAACGCGGGTCTGGATAAG
CGGTTCACGGCGTTGATCAGGGCGTACATGACGCATGCTGTGTATCCGGA
CGGAGCGACGTTTGAGGACGCGTACACGTACTTCATTGCTCTACGGGAGG
GGTCGCTGGCGCTGGTTGCGGCTGAACGGCGGGGACTGGGGATGATTGAC
ACGGAGCGATTCCGAGGTCTGATCCACAACGCAGCCCAGATGATGGAGCC
GTGGCAATGTGCGCGGATCGTGGGTCACTCGTCTGGAGGAGGACTGTCGT
ATCCGGCTTGGGCTGCGCTTTTCAAGTACGCGTACCCCGAGGGCGCTCTG
CCGCAAATGGTTTGGAAGCAGAGGATGGGGAAGCATTTCAAGAACAACAA
CCCGTGTCGGATCCAGTGGGTGCAGAACCTGATGCACGTTCTTGTGATGG
GAATGGAGCACGGAAGTTCGACGTACGCGGAGTCGCCGCAGGGTCTCGAA
GAGGAGTTCAAGAAGCACTTTGCGCTGTCGTACTTGAGCCCTCGTCGGGG
GCTGCTTATTGCGAGGAGCAGTGAGGCGGAGGACGCGCTGTACGTGCACT
TTGATGCGCGCCCCGACGCGATGTTCCCCGGGCACGACAACGCTGATCGC
GGAGTGTTTACGCTGACGGCGTTCAAGACTGCGTGGATCGACGACTATGC
GTGGAGGTACAACATCGACTCGAGAAAGCATTCGCTGCTGCATGTGGACG
GTTTGGCGCAGGACGCCAAGGCACCATCGGTACACATGGTTCGAACGGAG
GACAGTGGCACGCAGGTGATTGCAGTAGCGAACCTGACTTATGCTTATAA
CGTGGAATGGGCGAGGAACTGGCCGTATGACAAGGCGCCCATGGCGAGGG
TGACGGTGTACGACGATGAGGGGAGAGAGAGGCAGGTGGGAAAAATGTTT
GATGTGGCGGAATACGGACACCCGCACGACTTTGGATGGCCTGCTGATGA
CGATGGGGAGGACCTGGGATTCACTCGGGAGGGGTTCAACATGCACGGGG
ATGCGGATGTAGGGTTCCGAGGTATGTGGACGTGGAAACGGGCGTACCGA
GAGACACCGCTGGCGTGGATGGTACGGTCTGTGATTCTGAACCGGGCAGG
AGGCGGGCCGGGGTTTTTCATGGTTGTGGACTCTGCGAGAGTGTCTGGGG
CGGCAGTGAAGAACAAATTCGAATCGTACCTTGCACTTGGAGACAAGGTG
AAGGTGGAGAGCGAATCGTCGAGTTGCGAAGGGAATCGGTGCAGGATCGT
GTTAGTGGACGATGGGATTGCACAGGTGGATGTGCATGTTGTGACGATTG
GGAAATCGGCATCGTATCGGACGGAGACTTTCAAGAGCGACGCGGAACAC
ACAATGCTTATTGTACGAAGCGACAACGAGAAGGAGGAAGTGTTTTGGAT
GGCATTCCATGCTCACCTGGGAGAACCAGAGCGCTTTTCGATGGAACCGA
TTTCG back to topCoding sequence (CDS) from alignment at NODE_3966_length_2730_cov_13.267905:2..2506- >Gcaud1745.t1 ID=Gcaud1745.t1|Name=Gcaud1745.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2505bp|location=Sequence derived from alignment at NODE_3966_length_2730_cov_13.267905:2..2506- (Gracilaria caudata M_176_S67 male) ATGAAGATGAGTGGAGGATTGTTCTTGGTAGTGTGGGGTTGTTGTACAGC ATTGGCGATATCGGCGCAAGTGTTATCTACGGATGGATTGAAGGAAGCGA AGGTGAATGGTGTGAGCATGTTCATGAAGTCCGGACCGCATCGCTCGCTG TTTGGGAAGGCGGCCATTACTCCTGCTCCATCGACTGCGTTTAAGGGTAG TGTTCATCCTCGGATACTGTTTGACGGGAGCGGATGGGAGGAGATGTTAG AACGTTATTCGAACGAGGATACTTTTGACATGAAGACATCATGGTCTCAC TTTTCTCGGCGGACGTCATTGCATCTGGCGGAATCGAATCCGATTCTAAA GCGGCTGATCGAAATGGAACGTAATGGGGAAACGGCAGTGTACAGTGGGA AGGAGGATTTGTCGTCTGCGTCGCGGGAGCAGTTGGATGAGCTCGAACAG CTGGCGAGTCACGTGATGAACATGTCGGAAGGGTACTCACAGAGCTTCTT TATATGCGCGTTGTGGAGCAGTGTGAACGAGAAGGTGATGAAGGAACGGG GTCGGGAGGAGTCGTTCATGAAGACGAGTGTGGAAGACTGCGTGAAGGCA TCTGTGGCATGGGCGAAGGTGCTGCTTGCGCATCGGGCGGTGAACTGCGC GGGAAAGTGTACGAGTGGAGCAAGTGGGAGTCGTGCGTTCCTGTGGGACG AGGAGCGTTGGTTCCAGGTTCAGAATGACTGGTACTCTGCCGGAGCTAGT CTGGCGCTCACTTTGGACGTGCTGTACGACCGATTCGCAGATGAGGAACG ACGAGTGGTGGTGAGCGCATTGGCGATGCTGATGTACAAGCAGACTTCGT GGGGAACGGCAGTGGAAAGCTCACGCAACTCACCGAACGCAGCGCAACAC CCGCACCGGATATTCAGCAACTGGGCGTTGTACCATGGACATCTGTACAT TACTAACTTGGTGTTGGAGGGAGAGCACGACTTCGATGCGTACGCGTCTG CTGTGTTGTCTTCGAGCGGAGTGGACGGGTTCAACGCGGGTCTGGATAAG CGGTTCACGGCGTTGATCAGGGCGTACATGACGCATGCTGTGTATCCGGA CGGAGCGACGTTTGAGGACGCGTACACGTACTTCATTGCTCTACGGGAGG GGTCGCTGGCGCTGGTTGCGGCTGAACGGCGGGGACTGGGGATGATTGAC ACGGAGCGATTCCGAGGTCTGATCCACAACGCAGCCCAGATGATGGAGCC GTGGCAATGTGCGCGGATCGTGGGTCACTCGTCTGGAGGAGGACTGTCGT ATCCGGCTTGGGCTGCGCTTTTCAAGTACGCGTACCCCGAGGGCGCTCTG CCGCAAATGGTTTGGAAGCAGAGGATGGGGAAGCATTTCAAGAACAACAA CCCGTGTCGGATCCAGTGGGTGCAGAACCTGATGCACGTTCTTGTGATGG GAATGGAGCACGGAAGTTCGACGTACGCGGAGTCGCCGCAGGGTCTCGAA GAGGAGTTCAAGAAGCACTTTGCGCTGTCGTACTTGAGCCCTCGTCGGGG GCTGCTTATTGCGAGGAGCAGTGAGGCGGAGGACGCGCTGTACGTGCACT TTGATGCGCGCCCCGACGCGATGTTCCCCGGGCACGACAACGCTGATCGC GGAGTGTTTACGCTGACGGCGTTCAAGACTGCGTGGATCGACGACTATGC GTGGAGGTACAACATCGACTCGAGAAAGCATTCGCTGCTGCATGTGGACG GTTTGGCGCAGGACGCCAAGGCACCATCGGTACACATGGTTCGAACGGAG GACAGTGGCACGCAGGTGATTGCAGTAGCGAACCTGACTTATGCTTATAA CGTGGAATGGGCGAGGAACTGGCCGTATGACAAGGCGCCCATGGCGAGGG TGACGGTGTACGACGATGAGGGGAGAGAGAGGCAGGTGGGAAAAATGTTT GATGTGGCGGAATACGGACACCCGCACGACTTTGGATGGCCTGCTGATGA CGATGGGGAGGACCTGGGATTCACTCGGGAGGGGTTCAACATGCACGGGG ATGCGGATGTAGGGTTCCGAGGTATGTGGACGTGGAAACGGGCGTACCGA GAGACACCGCTGGCGTGGATGGTACGGTCTGTGATTCTGAACCGGGCAGG AGGCGGGCCGGGGTTTTTCATGGTTGTGGACTCTGCGAGAGTGTCTGGGG CGGCAGTGAAGAACAAATTCGAATCGTACCTTGCACTTGGAGACAAGGTG AAGGTGGAGAGCGAATCGTCGAGTTGCGAAGGGAATCGGTGCAGGATCGT GTTAGTGGACGATGGGATTGCACAGGTGGATGTGCATGTTGTGACGATTG GGAAATCGGCATCGTATCGGACGGAGACTTTCAAGAGCGACGCGGAACAC ACAATGCTTATTGTACGAAGCGACAACGAGAAGGAGGAAGTGTTTTGGAT GGCATTCCATGCTCACCTGGGAGAACCAGAGCGCTTTTCGATGGAACCGA TTTCG back to top
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