Gcaud1744.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1744.t1
Unique Name	Gcaud1744.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	276

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_4592_length_2142_cov_7.603608	contig	NODE_4592_length_2142_cov_7.603608:262..1089 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1744	Gcaud1744	Gracilaria caudata M_176_S67 male	gene	NODE_4592_length_2142_cov_7.603608 262..1089 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1744.t1.start1	Gcaud1744.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_4592_length_2142_cov_7.603608 262..264 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1744.t1.CDS1	Gcaud1744.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_4592_length_2142_cov_7.603608 262..1089 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1744.t1.exon1	Gcaud1744.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_4592_length_2142_cov_7.603608 262..1089 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1744.t1.stop1	Gcaud1744.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_4592_length_2142_cov_7.603608 1087..1089 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1744.t1	Gcaud1744.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_4592_length_2142_cov_7.603608 262..1089 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_4592_length_2142_cov_7.603608:262..1089+
coding sequence from alignment at NODE_4592_length_2142_cov_7.603608:262..1089+

mRNA sequence

>Gcaud1744.t1 ID=Gcaud1744.t1|Name=Gcaud1744.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=276bp
MSEPFQREVLILKTSIVTEDCVGLKDLTCSKSNAITRISKANMVGNDEDE
MLLVRRPASDVQASTDDTKTLHSTAEHDFQAVANALYILVAMLVTYFFYA
LIQAKPCINVTAHNNAKKRFRGSRGRRRGGNEPKVINDGYSRAQMLQQND
EEQTDITQNRERSGKVRNRDAYGQRGGRGGRGGRGGRGGRGGRGGRGGRG
GRRSRSNTARQPSASIDEKQEDTSADITRDDINPDDQKEHQRLDGRRARG
GCTSAERRRNNTSKYFNQVQAHKST*

spliced messenger RNA

>Gcaud1744.t1 ID=Gcaud1744.t1|Name=Gcaud1744.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=828bp|location=Sequence derived from alignment at NODE_4592_length_2142_cov_7.603608:262..1089+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGAACCTTTTCAAAGAGAAGTCTTGATTTTGAAAACCTCAATCGT
TACGGAAGATTGCGTTGGCTTGAAAGACTTGACTTGTTCAAAGAGCAATG
CTATTACAAGAATATCAAAAGCAAACATGGTTGGAAATGATGAAGATGAA
ATGCTTTTGGTTAGAAGGCCTGCCAGTGACGTTCAGGCATCCACAGATGA
TACCAAAACTCTCCACAGCACTGCAGAACATGATTTCCAAGCAGTTGCAA
ACGCATTGTATATTCTTGTGGCAATGTTAGTGACGTATTTTTTCTATGCT
TTGATTCAAGCCAAACCTTGTATTAACGTCACTGCTCATAATAATGCAAA
GAAGCGCTTTAGAGGTTCTCGAGGGCGCAGACGGGGTGGAAATGAACCAA
AAGTTATCAATGATGGCTATTCACGTGCACAAATGCTGCAACAGAATGAT
GAAGAGCAGACAGATATAACACAAAACCGCGAGAGAAGTGGTAAGGTCCG
AAATCGGGATGCTTATGGCCAGCGCGGTGGTCGTGGTGGTCGTGGCGGTC
GTGGCGGGCGGGGCGGTCGTGGCGGGCGGGGCGGTCGCGGTGGGCGTGGC
GGTCGTCGCAGTCGAAGTAATACTGCTCGTCAGCCGTCGGCAAGCATTGA
CGAGAAGCAGGAAGACACGAGCGCAGATATTACTCGGGATGACATCAATC
CAGATGATCAAAAGGAACATCAGAGGCTGGATGGCCGGCGCGCACGAGGA
GGCTGTACAAGTGCCGAGAGGCGGAGAAACAATACCTCGAAATACTTCAA
CCAAGTCCAAGCTCATAAATCAACGTGA

protein sequence of Gcaud1744.t1

>Gcaud1744.t1 ID=Gcaud1744.t1|Name=Gcaud1744.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=276bp
MSEPFQREVLILKTSIVTEDCVGLKDLTCSKSNAITRISKANMVGNDEDE
MLLVRRPASDVQASTDDTKTLHSTAEHDFQAVANALYILVAMLVTYFFYA
LIQAKPCINVTAHNNAKKRFRGSRGRRRGGNEPKVINDGYSRAQMLQQND
EEQTDITQNRERSGKVRNRDAYGQRGGRGGRGGRGGRGGRGGRGGRGGRG
GRRSRSNTARQPSASIDEKQEDTSADITRDDINPDDQKEHQRLDGRRARG
GCTSAERRRNNTSKYFNQVQAHKST*

mRNA from alignment at NODE_4592_length_2142_cov_7.603608:262..1089+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1744.t1 ID=Gcaud1744.t1|Name=Gcaud1744.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=828bp|location=Sequence derived from alignment at NODE_4592_length_2142_cov_7.603608:262..1089+ (Gracilaria caudata M_176_S67 male)
ATGAGTGAACCTTTTCAAAGAGAAGTCTTGATTTTGAAAACCTCAATCGT
TACGGAAGATTGCGTTGGCTTGAAAGACTTGACTTGTTCAAAGAGCAATG
CTATTACAAGAATATCAAAAGCAAACATGGTTGGAAATGATGAAGATGAA
ATGCTTTTGGTTAGAAGGCCTGCCAGTGACGTTCAGGCATCCACAGATGA
TACCAAAACTCTCCACAGCACTGCAGAACATGATTTCCAAGCAGTTGCAA
ACGCATTGTATATTCTTGTGGCAATGTTAGTGACGTATTTTTTCTATGCT
TTGATTCAAGCCAAACCTTGTATTAACGTCACTGCTCATAATAATGCAAA
GAAGCGCTTTAGAGGTTCTCGAGGGCGCAGACGGGGTGGAAATGAACCAA
AAGTTATCAATGATGGCTATTCACGTGCACAAATGCTGCAACAGAATGAT
GAAGAGCAGACAGATATAACACAAAACCGCGAGAGAAGTGGTAAGGTCCG
AAATCGGGATGCTTATGGCCAGCGCGGTGGTCGTGGTGGTCGTGGCGGTC
GTGGCGGGCGGGGCGGTCGTGGCGGGCGGGGCGGTCGCGGTGGGCGTGGC
GGTCGTCGCAGTCGAAGTAATACTGCTCGTCAGCCGTCGGCAAGCATTGA
CGAGAAGCAGGAAGACACGAGCGCAGATATTACTCGGGATGACATCAATC
CAGATGATCAAAAGGAACATCAGAGGCTGGATGGCCGGCGCGCACGAGGA
GGCTGTACAAGTGCCGAGAGGCGGAGAAACAATACCTCGAAATACTTCAA
CCAAGTCCAAGCTCATAAATCAACGTGA

Coding sequence (CDS) from alignment at NODE_4592_length_2142_cov_7.603608:262..1089+

>Gcaud1744.t1 ID=Gcaud1744.t1|Name=Gcaud1744.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=828bp|location=Sequence derived from alignment at NODE_4592_length_2142_cov_7.603608:262..1089+ (Gracilaria caudata M_176_S67 male)
ATGAGTGAACCTTTTCAAAGAGAAGTCTTGATTTTGAAAACCTCAATCGT
TACGGAAGATTGCGTTGGCTTGAAAGACTTGACTTGTTCAAAGAGCAATG
CTATTACAAGAATATCAAAAGCAAACATGGTTGGAAATGATGAAGATGAA
ATGCTTTTGGTTAGAAGGCCTGCCAGTGACGTTCAGGCATCCACAGATGA
TACCAAAACTCTCCACAGCACTGCAGAACATGATTTCCAAGCAGTTGCAA
ACGCATTGTATATTCTTGTGGCAATGTTAGTGACGTATTTTTTCTATGCT
TTGATTCAAGCCAAACCTTGTATTAACGTCACTGCTCATAATAATGCAAA
GAAGCGCTTTAGAGGTTCTCGAGGGCGCAGACGGGGTGGAAATGAACCAA
AAGTTATCAATGATGGCTATTCACGTGCACAAATGCTGCAACAGAATGAT
GAAGAGCAGACAGATATAACACAAAACCGCGAGAGAAGTGGTAAGGTCCG
AAATCGGGATGCTTATGGCCAGCGCGGTGGTCGTGGTGGTCGTGGCGGTC
GTGGCGGGCGGGGCGGTCGTGGCGGGCGGGGCGGTCGCGGTGGGCGTGGC
GGTCGTCGCAGTCGAAGTAATACTGCTCGTCAGCCGTCGGCAAGCATTGA
CGAGAAGCAGGAAGACACGAGCGCAGATATTACTCGGGATGACATCAATC
CAGATGATCAAAAGGAACATCAGAGGCTGGATGGCCGGCGCGCACGAGGA
GGCTGTACAAGTGCCGAGAGGCGGAGAAACAATACCTCGAAATACTTCAA
CCAAGTCCAAGCTCATAAATCAACGTGA