Gcaud1741.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1741.t1
Unique Name	Gcaud1741.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	536

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1608_length_9502_cov_3.964935	contig	NODE_1608_length_9502_cov_3.964935:3915..5522 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMM153CT
Max annot lvl	45157.CMM153CT\|-
KEGG ko	ko:K16075
KEGG TC	1.A.35.5
Evalue	1.5e-57
EggNOG OGs	KOG2662@1\|root,KOG2662@2759\|Eukaryota
Description	magnesium ion transmembrane transporter activity
COG category	C
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1741	Gcaud1741	Gracilaria caudata M_176_S67 male	gene	NODE_1608_length_9502_cov_3.964935 3915..5522 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1741.t1.start1	Gcaud1741.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1608_length_9502_cov_3.964935 3915..3917 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1741.t1.CDS1	Gcaud1741.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1608_length_9502_cov_3.964935 3915..5522 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1741.t1.exon1	Gcaud1741.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1608_length_9502_cov_3.964935 3915..5522 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1741.t1.stop1	Gcaud1741.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1608_length_9502_cov_3.964935 5520..5522 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1741.t1	Gcaud1741.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1608_length_9502_cov_3.964935 3915..5522 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1608_length_9502_cov_3.964935:3915..5522+
coding sequence from alignment at NODE_1608_length_9502_cov_3.964935:3915..5522+

mRNA sequence

>Gcaud1741.t1 ID=Gcaud1741.t1|Name=Gcaud1741.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=536bp
MPAQLRRSSSAPSLSNVRLPRAHLRRLVAATRRFFSRGRTDHQSQTHSHS
PTPSLTPRTSSDQHSDAKPNGLEQYALRYGRRNLTLTFLQIDMHGVSQKR
TLTRQQILTEVRLAADFPDASTPHSHAFMDFRNSQFAHTVVDHDFAKPLR
GRARRIRQGSRHSEALARDFAPSVRKRRGANRLTIRDMRQMDPEFPANPA
IWIREDAIVVSLESVRAIILHNKIFVFDPDNDIMQKPMWYIRKCVNSNEN
VFLPFEFRALEGILLNTCAVLEREFVAIEPQLRQTIGTLPTRVTNEGLEM
LRHLERRLNHYYSRARKVQQALQTVLDDDEDMADMYLTEKYKNRALRRNP
LDHDEAEMLLETYLQTVDDVTTKSELLNHAIDHTENLIEIHLDTMQNRLL
LVDLIITAITTTISFGTLVTAIFGMNLPLPEQIASLPSSQFYFYGCVLLM
VTMMGIGLAFLMRWCQRQGIYRGRIPTRKRLRMRRQKSTVTQMNERVRRQ
AEEVLAKSRPQSLRRIRFPWEHEAESLTVRDGHLV*

spliced messenger RNA

>Gcaud1741.t1 ID=Gcaud1741.t1|Name=Gcaud1741.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1608bp|location=Sequence derived from alignment at NODE_1608_length_9502_cov_3.964935:3915..5522+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCTCAGTTGCGACGTTCGTCTTCGGCCCCGTCTCTCAGTAACGT
TCGTCTCCCCCGCGCTCATCTGCGTCGGCTCGTGGCAGCAACCCGTCGTT
TTTTTTCGCGTGGTCGTACAGACCACCAATCTCAAACCCATTCCCACTCC
CCCACCCCGTCTCTCACACCGCGAACAAGCTCGGACCAACACTCCGACGC
CAAACCAAATGGCCTCGAACAATATGCGCTTCGTTACGGGCGTCGAAACC
TCACCCTTACCTTCTTGCAGATAGATATGCATGGCGTTTCGCAGAAGCGA
ACCCTAACTAGACAACAGATACTTACCGAAGTGCGGCTTGCAGCCGATTT
TCCGGACGCCAGCACGCCGCACTCCCACGCTTTTATGGACTTCCGCAATT
CTCAATTCGCTCATACTGTTGTTGATCACGACTTTGCTAAACCGCTGCGC
GGCAGAGCTCGTCGAATTCGACAAGGCTCTCGTCATTCGGAGGCGCTAGC
TCGTGATTTCGCACCCTCTGTTAGGAAACGCCGCGGCGCCAACCGGCTTA
CCATTCGTGATATGCGTCAGATGGATCCAGAGTTTCCAGCCAATCCTGCA
ATTTGGATTCGCGAGGACGCCATTGTCGTTAGTCTCGAATCTGTGCGTGC
TATTATTCTTCATAACAAGATTTTCGTGTTTGATCCCGACAACGATATTA
TGCAGAAACCTATGTGGTATATAAGGAAATGTGTCAACAGCAATGAGAAC
GTGTTTCTTCCATTCGAGTTCAGAGCGTTGGAGGGCATTTTGTTGAATAC
GTGTGCCGTTCTTGAACGCGAGTTTGTCGCAATTGAACCGCAGCTACGGC
AGACAATCGGCACTCTACCTACACGCGTTACGAATGAGGGATTAGAAATG
TTGCGTCACTTAGAGCGACGTCTCAATCATTACTACTCAAGAGCACGTAA
AGTGCAACAGGCGTTGCAAACTGTGTTGGATGATGACGAAGATATGGCCG
ATATGTATCTCACGGAGAAGTACAAGAATCGCGCACTTAGGAGAAATCCG
CTTGATCATGACGAAGCTGAGATGTTGCTTGAAACGTACTTACAGACGGT
GGATGACGTCACCACAAAGAGCGAGTTGCTGAATCACGCCATTGATCACA
CTGAGAATCTTATCGAAATCCACCTCGATACGATGCAGAATCGACTTTTG
TTAGTGGATTTGATCATCACAGCCATCACCACCACTATCTCCTTTGGAAC
GTTAGTAACTGCCATTTTCGGAATGAACTTGCCGTTGCCAGAGCAGATAG
CAAGTCTACCAAGTAGTCAGTTTTACTTCTACGGATGTGTTTTGCTGATG
GTTACTATGATGGGCATCGGGCTTGCCTTTTTGATGAGGTGGTGTCAGCG
GCAGGGCATATACAGGGGAAGGATACCTACTCGCAAGAGACTCAGAATGC
GCAGACAGAAAAGTACCGTAACTCAAATGAACGAAAGAGTGCGACGACAA
GCGGAGGAAGTTCTCGCGAAGTCGAGGCCACAATCTTTGCGAAGAATTCG
CTTTCCCTGGGAGCACGAAGCGGAAAGCCTTACGGTCAGGGATGGGCACT
TGGTTTAG

protein sequence of Gcaud1741.t1

>Gcaud1741.t1 ID=Gcaud1741.t1|Name=Gcaud1741.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=536bp
MPAQLRRSSSAPSLSNVRLPRAHLRRLVAATRRFFSRGRTDHQSQTHSHS
PTPSLTPRTSSDQHSDAKPNGLEQYALRYGRRNLTLTFLQIDMHGVSQKR
TLTRQQILTEVRLAADFPDASTPHSHAFMDFRNSQFAHTVVDHDFAKPLR
GRARRIRQGSRHSEALARDFAPSVRKRRGANRLTIRDMRQMDPEFPANPA
IWIREDAIVVSLESVRAIILHNKIFVFDPDNDIMQKPMWYIRKCVNSNEN
VFLPFEFRALEGILLNTCAVLEREFVAIEPQLRQTIGTLPTRVTNEGLEM
LRHLERRLNHYYSRARKVQQALQTVLDDDEDMADMYLTEKYKNRALRRNP
LDHDEAEMLLETYLQTVDDVTTKSELLNHAIDHTENLIEIHLDTMQNRLL
LVDLIITAITTTISFGTLVTAIFGMNLPLPEQIASLPSSQFYFYGCVLLM
VTMMGIGLAFLMRWCQRQGIYRGRIPTRKRLRMRRQKSTVTQMNERVRRQ
AEEVLAKSRPQSLRRIRFPWEHEAESLTVRDGHLV*

mRNA from alignment at NODE_1608_length_9502_cov_3.964935:3915..5522+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1741.t1 ID=Gcaud1741.t1|Name=Gcaud1741.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1608bp|location=Sequence derived from alignment at NODE_1608_length_9502_cov_3.964935:3915..5522+ (Gracilaria caudata M_176_S67 male)
ATGCCCGCTCAGTTGCGACGTTCGTCTTCGGCCCCGTCTCTCAGTAACGT
TCGTCTCCCCCGCGCTCATCTGCGTCGGCTCGTGGCAGCAACCCGTCGTT
TTTTTTCGCGTGGTCGTACAGACCACCAATCTCAAACCCATTCCCACTCC
CCCACCCCGTCTCTCACACCGCGAACAAGCTCGGACCAACACTCCGACGC
CAAACCAAATGGCCTCGAACAATATGCGCTTCGTTACGGGCGTCGAAACC
TCACCCTTACCTTCTTGCAGATAGATATGCATGGCGTTTCGCAGAAGCGA
ACCCTAACTAGACAACAGATACTTACCGAAGTGCGGCTTGCAGCCGATTT
TCCGGACGCCAGCACGCCGCACTCCCACGCTTTTATGGACTTCCGCAATT
CTCAATTCGCTCATACTGTTGTTGATCACGACTTTGCTAAACCGCTGCGC
GGCAGAGCTCGTCGAATTCGACAAGGCTCTCGTCATTCGGAGGCGCTAGC
TCGTGATTTCGCACCCTCTGTTAGGAAACGCCGCGGCGCCAACCGGCTTA
CCATTCGTGATATGCGTCAGATGGATCCAGAGTTTCCAGCCAATCCTGCA
ATTTGGATTCGCGAGGACGCCATTGTCGTTAGTCTCGAATCTGTGCGTGC
TATTATTCTTCATAACAAGATTTTCGTGTTTGATCCCGACAACGATATTA
TGCAGAAACCTATGTGGTATATAAGGAAATGTGTCAACAGCAATGAGAAC
GTGTTTCTTCCATTCGAGTTCAGAGCGTTGGAGGGCATTTTGTTGAATAC
GTGTGCCGTTCTTGAACGCGAGTTTGTCGCAATTGAACCGCAGCTACGGC
AGACAATCGGCACTCTACCTACACGCGTTACGAATGAGGGATTAGAAATG
TTGCGTCACTTAGAGCGACGTCTCAATCATTACTACTCAAGAGCACGTAA
AGTGCAACAGGCGTTGCAAACTGTGTTGGATGATGACGAAGATATGGCCG
ATATGTATCTCACGGAGAAGTACAAGAATCGCGCACTTAGGAGAAATCCG
CTTGATCATGACGAAGCTGAGATGTTGCTTGAAACGTACTTACAGACGGT
GGATGACGTCACCACAAAGAGCGAGTTGCTGAATCACGCCATTGATCACA
CTGAGAATCTTATCGAAATCCACCTCGATACGATGCAGAATCGACTTTTG
TTAGTGGATTTGATCATCACAGCCATCACCACCACTATCTCCTTTGGAAC
GTTAGTAACTGCCATTTTCGGAATGAACTTGCCGTTGCCAGAGCAGATAG
CAAGTCTACCAAGTAGTCAGTTTTACTTCTACGGATGTGTTTTGCTGATG
GTTACTATGATGGGCATCGGGCTTGCCTTTTTGATGAGGTGGTGTCAGCG
GCAGGGCATATACAGGGGAAGGATACCTACTCGCAAGAGACTCAGAATGC
GCAGACAGAAAAGTACCGTAACTCAAATGAACGAAAGAGTGCGACGACAA
GCGGAGGAAGTTCTCGCGAAGTCGAGGCCACAATCTTTGCGAAGAATTCG
CTTTCCCTGGGAGCACGAAGCGGAAAGCCTTACGGTCAGGGATGGGCACT
TGGTTTAG

Coding sequence (CDS) from alignment at NODE_1608_length_9502_cov_3.964935:3915..5522+

>Gcaud1741.t1 ID=Gcaud1741.t1|Name=Gcaud1741.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1608bp|location=Sequence derived from alignment at NODE_1608_length_9502_cov_3.964935:3915..5522+ (Gracilaria caudata M_176_S67 male)
ATGCCCGCTCAGTTGCGACGTTCGTCTTCGGCCCCGTCTCTCAGTAACGT
TCGTCTCCCCCGCGCTCATCTGCGTCGGCTCGTGGCAGCAACCCGTCGTT
TTTTTTCGCGTGGTCGTACAGACCACCAATCTCAAACCCATTCCCACTCC
CCCACCCCGTCTCTCACACCGCGAACAAGCTCGGACCAACACTCCGACGC
CAAACCAAATGGCCTCGAACAATATGCGCTTCGTTACGGGCGTCGAAACC
TCACCCTTACCTTCTTGCAGATAGATATGCATGGCGTTTCGCAGAAGCGA
ACCCTAACTAGACAACAGATACTTACCGAAGTGCGGCTTGCAGCCGATTT
TCCGGACGCCAGCACGCCGCACTCCCACGCTTTTATGGACTTCCGCAATT
CTCAATTCGCTCATACTGTTGTTGATCACGACTTTGCTAAACCGCTGCGC
GGCAGAGCTCGTCGAATTCGACAAGGCTCTCGTCATTCGGAGGCGCTAGC
TCGTGATTTCGCACCCTCTGTTAGGAAACGCCGCGGCGCCAACCGGCTTA
CCATTCGTGATATGCGTCAGATGGATCCAGAGTTTCCAGCCAATCCTGCA
ATTTGGATTCGCGAGGACGCCATTGTCGTTAGTCTCGAATCTGTGCGTGC
TATTATTCTTCATAACAAGATTTTCGTGTTTGATCCCGACAACGATATTA
TGCAGAAACCTATGTGGTATATAAGGAAATGTGTCAACAGCAATGAGAAC
GTGTTTCTTCCATTCGAGTTCAGAGCGTTGGAGGGCATTTTGTTGAATAC
GTGTGCCGTTCTTGAACGCGAGTTTGTCGCAATTGAACCGCAGCTACGGC
AGACAATCGGCACTCTACCTACACGCGTTACGAATGAGGGATTAGAAATG
TTGCGTCACTTAGAGCGACGTCTCAATCATTACTACTCAAGAGCACGTAA
AGTGCAACAGGCGTTGCAAACTGTGTTGGATGATGACGAAGATATGGCCG
ATATGTATCTCACGGAGAAGTACAAGAATCGCGCACTTAGGAGAAATCCG
CTTGATCATGACGAAGCTGAGATGTTGCTTGAAACGTACTTACAGACGGT
GGATGACGTCACCACAAAGAGCGAGTTGCTGAATCACGCCATTGATCACA
CTGAGAATCTTATCGAAATCCACCTCGATACGATGCAGAATCGACTTTTG
TTAGTGGATTTGATCATCACAGCCATCACCACCACTATCTCCTTTGGAAC
GTTAGTAACTGCCATTTTCGGAATGAACTTGCCGTTGCCAGAGCAGATAG
CAAGTCTACCAAGTAGTCAGTTTTACTTCTACGGATGTGTTTTGCTGATG
GTTACTATGATGGGCATCGGGCTTGCCTTTTTGATGAGGTGGTGTCAGCG
GCAGGGCATATACAGGGGAAGGATACCTACTCGCAAGAGACTCAGAATGC
GCAGACAGAAAAGTACCGTAACTCAAATGAACGAAAGAGTGCGACGACAA
GCGGAGGAAGTTCTCGCGAAGTCGAGGCCACAATCTTTGCGAAGAATTCG
CTTTCCCTGGGAGCACGAAGCGGAAAGCCTTACGGTCAGGGATGGGCACT
TGGTTTAG