Gcaud1734.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1734.t1
Unique NameGcaud1734.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length45
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_12904_length_427_cov_7.425595contigNODE_12904_length_427_cov_7.425595:2..191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1734Gcaud1734Gracilaria caudata M_176_S67 malegeneNODE_12904_length_427_cov_7.425595 2..191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1734.t1Gcaud1734.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_12904_length_427_cov_7.425595 2..191 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1734.t1.CDS1Gcaud1734.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_12904_length_427_cov_7.425595 2..114 -
Gcaud1734.t1.CDS2Gcaud1734.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_12904_length_427_cov_7.425595 172..191 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1734.t1.exon1Gcaud1734.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_12904_length_427_cov_7.425595 2..114 -
Gcaud1734.t1.exon2Gcaud1734.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_12904_length_427_cov_7.425595 172..191 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1734.t1.intron1Gcaud1734.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_12904_length_427_cov_7.425595 115..171 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1734.t1.start1Gcaud1734.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_12904_length_427_cov_7.425595 189..191 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1734.t1 ID=Gcaud1734.t1|Name=Gcaud1734.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=45bp
MADSYSTYSEMLRPNPYYDPLLNLITGPTEPYSQSLHDKISKVVX
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spliced messenger RNA

>Gcaud1734.t1 ID=Gcaud1734.t1|Name=Gcaud1734.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=133bp|location=Sequence derived from alignment at NODE_12904_length_427_cov_7.425595:2..191- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGATTCTTATTCTACATACTCTGAGATGCTAAGACCAAATCCGTA
CTATGACCCTCTCTTAAATTTGATAACTGGTCCAACAGAACCGTACTCAC
AATCACTTCATGACAAAATCTCTAAAGTCGTTG
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protein sequence of Gcaud1734.t1

>Gcaud1734.t1 ID=Gcaud1734.t1|Name=Gcaud1734.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=45bp
MADSYSTYSEMLRPNPYYDPLLNLITGPTEPYSQSLHDKISKVVX
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mRNA from alignment at NODE_12904_length_427_cov_7.425595:2..191-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1734.t1 ID=Gcaud1734.t1|Name=Gcaud1734.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=190bp|location=Sequence derived from alignment at NODE_12904_length_427_cov_7.425595:2..191- (Gracilaria caudata M_176_S67 male)
ATGGCAGATTCTTATTCTACGTATGTTATCAATCCTTTCTACAACTTTAT
GCACATTCTAACCATTTTACCTTCAAGATACTCTGAGATGCTAAGACCAA
ATCCGTACTATGACCCTCTCTTAAATTTGATAACTGGTCCAACAGAACCG
TACTCACAATCACTTCATGACAAAATCTCTAAAGTCGTTG
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Coding sequence (CDS) from alignment at NODE_12904_length_427_cov_7.425595:2..191-

>Gcaud1734.t1 ID=Gcaud1734.t1|Name=Gcaud1734.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=133bp|location=Sequence derived from alignment at NODE_12904_length_427_cov_7.425595:2..191- (Gracilaria caudata M_176_S67 male)
ATGGCAGATTCTTATTCTACATACTCTGAGATGCTAAGACCAAATCCGTA
CTATGACCCTCTCTTAAATTTGATAACTGGTCCAACAGAACCGTACTCAC
AATCACTTCATGACAAAATCTCTAAAGTCGTTG
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