Gcaud1732.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1732.t1
Unique NameGcaud1732.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length181
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1010_length_15078_cov_4.529993contigNODE_1010_length_15078_cov_4.529993:12298..12840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1732Gcaud1732Gracilaria caudata M_176_S67 malegeneNODE_1010_length_15078_cov_4.529993 12298..12840 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1732.t1.start1Gcaud1732.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1010_length_15078_cov_4.529993 12298..12300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1732.t1.CDS1Gcaud1732.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1010_length_15078_cov_4.529993 12298..12840 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1732.t1.exon1Gcaud1732.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1010_length_15078_cov_4.529993 12298..12840 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1732.t1.stop1Gcaud1732.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1010_length_15078_cov_4.529993 12838..12840 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1732.t1Gcaud1732.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1010_length_15078_cov_4.529993 12298..12840 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1732.t1 ID=Gcaud1732.t1|Name=Gcaud1732.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=181bp
MEWEGMHRPLRPPPGFERFHSEESVFPGIHANWKKKRTLKDYTDVAKQAW
RLYRHSYIYDPEMAEFEKKILEREDMIIQRQAKAILDRSEANFKRNRKAV
RDMSERITEEFHARRPEAEALMKDRVNVLREALTEFAEGYNEGVEGQFSF
FEDSEDDDVDYPPHVAKEGNKPVIYRNEKI*
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spliced messenger RNA

>Gcaud1732.t1 ID=Gcaud1732.t1|Name=Gcaud1732.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=543bp|location=Sequence derived from alignment at NODE_1010_length_15078_cov_4.529993:12298..12840+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATGGGAAGGAATGCACAGACCATTGCGACCCCCTCCAGGGTTCGA
ACGTTTTCATTCAGAAGAGTCCGTATTCCCTGGGATTCACGCGAACTGGA
AGAAAAAGCGGACTCTCAAAGACTACACCGACGTGGCCAAGCAAGCTTGG
AGACTCTATCGTCACTCTTATATCTACGATCCCGAAATGGCGGAATTCGA
GAAGAAAATATTAGAAAGAGAAGATATGATCATTCAACGTCAAGCAAAAG
CAATCTTGGATAGATCCGAGGCAAATTTCAAACGCAATCGAAAAGCCGTT
CGAGATATGTCCGAACGCATTACTGAAGAGTTTCATGCCAGGAGACCGGA
GGCAGAAGCACTCATGAAGGACAGAGTAAACGTCTTACGTGAGGCTTTAA
CAGAATTTGCTGAAGGTTACAACGAAGGCGTTGAAGGCCAGTTTAGCTTT
TTCGAAGATAGTGAAGATGATGATGTGGACTATCCACCTCATGTTGCTAA
GGAAGGCAACAAACCTGTGATCTACAGGAATGAGAAAATCTAA
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protein sequence of Gcaud1732.t1

>Gcaud1732.t1 ID=Gcaud1732.t1|Name=Gcaud1732.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=181bp
MEWEGMHRPLRPPPGFERFHSEESVFPGIHANWKKKRTLKDYTDVAKQAW
RLYRHSYIYDPEMAEFEKKILEREDMIIQRQAKAILDRSEANFKRNRKAV
RDMSERITEEFHARRPEAEALMKDRVNVLREALTEFAEGYNEGVEGQFSF
FEDSEDDDVDYPPHVAKEGNKPVIYRNEKI*
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mRNA from alignment at NODE_1010_length_15078_cov_4.529993:12298..12840+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1732.t1 ID=Gcaud1732.t1|Name=Gcaud1732.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=543bp|location=Sequence derived from alignment at NODE_1010_length_15078_cov_4.529993:12298..12840+ (Gracilaria caudata M_176_S67 male)
ATGGAATGGGAAGGAATGCACAGACCATTGCGACCCCCTCCAGGGTTCGA
ACGTTTTCATTCAGAAGAGTCCGTATTCCCTGGGATTCACGCGAACTGGA
AGAAAAAGCGGACTCTCAAAGACTACACCGACGTGGCCAAGCAAGCTTGG
AGACTCTATCGTCACTCTTATATCTACGATCCCGAAATGGCGGAATTCGA
GAAGAAAATATTAGAAAGAGAAGATATGATCATTCAACGTCAAGCAAAAG
CAATCTTGGATAGATCCGAGGCAAATTTCAAACGCAATCGAAAAGCCGTT
CGAGATATGTCCGAACGCATTACTGAAGAGTTTCATGCCAGGAGACCGGA
GGCAGAAGCACTCATGAAGGACAGAGTAAACGTCTTACGTGAGGCTTTAA
CAGAATTTGCTGAAGGTTACAACGAAGGCGTTGAAGGCCAGTTTAGCTTT
TTCGAAGATAGTGAAGATGATGATGTGGACTATCCACCTCATGTTGCTAA
GGAAGGCAACAAACCTGTGATCTACAGGAATGAGAAAATCTAA
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Coding sequence (CDS) from alignment at NODE_1010_length_15078_cov_4.529993:12298..12840+

>Gcaud1732.t1 ID=Gcaud1732.t1|Name=Gcaud1732.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=543bp|location=Sequence derived from alignment at NODE_1010_length_15078_cov_4.529993:12298..12840+ (Gracilaria caudata M_176_S67 male)
ATGGAATGGGAAGGAATGCACAGACCATTGCGACCCCCTCCAGGGTTCGA
ACGTTTTCATTCAGAAGAGTCCGTATTCCCTGGGATTCACGCGAACTGGA
AGAAAAAGCGGACTCTCAAAGACTACACCGACGTGGCCAAGCAAGCTTGG
AGACTCTATCGTCACTCTTATATCTACGATCCCGAAATGGCGGAATTCGA
GAAGAAAATATTAGAAAGAGAAGATATGATCATTCAACGTCAAGCAAAAG
CAATCTTGGATAGATCCGAGGCAAATTTCAAACGCAATCGAAAAGCCGTT
CGAGATATGTCCGAACGCATTACTGAAGAGTTTCATGCCAGGAGACCGGA
GGCAGAAGCACTCATGAAGGACAGAGTAAACGTCTTACGTGAGGCTTTAA
CAGAATTTGCTGAAGGTTACAACGAAGGCGTTGAAGGCCAGTTTAGCTTT
TTCGAAGATAGTGAAGATGATGATGTGGACTATCCACCTCATGTTGCTAA
GGAAGGCAACAAACCTGTGATCTACAGGAATGAGAAAATCTAA
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