Gcaud1729.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1729.t1
Unique NameGcaud1729.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length101
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1010_length_15078_cov_4.529993contigNODE_1010_length_15078_cov_4.529993:59..555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_001393-tr
Preferred nameEIF5B
PFAMsGTP_EFTU,GTP_EFTU_D2,IF-2
Max annot lvl33208|Metazoa
KEGG koko:K03243,ko:K12162
KEGG Pathwayko03013,map03013
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0017151,GO:0019222,GO:0019538,GO:0019899,GO:0031323,GO:0031326,GO:0032268,GO:0034248,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2000112
Evalue2.94e-44
EggNOG OGsCOG0532@1|root,KOG3483@1|root,KOG1144@2759|Eukaryota,KOG3483@2759|Eukaryota,38DE9@33154|Opisthokonta,3BBMB@33208|Metazoa,3CZBM@33213|Bilateria
Descriptiontranslation initiation factor activity
COG categoryJ
BRITEko00000,ko00001,ko03012,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1729Gcaud1729Gracilaria caudata M_176_S67 malegeneNODE_1010_length_15078_cov_4.529993 59..555 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1729.t1Gcaud1729.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1010_length_15078_cov_4.529993 59..555 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1729.t1.CDS1Gcaud1729.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1010_length_15078_cov_4.529993 59..159 +
Gcaud1729.t1.CDS2Gcaud1729.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1010_length_15078_cov_4.529993 242..372 +
Gcaud1729.t1.CDS3Gcaud1729.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1010_length_15078_cov_4.529993 485..555 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1729.t1.exon1Gcaud1729.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1010_length_15078_cov_4.529993 59..159 +
Gcaud1729.t1.exon2Gcaud1729.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1010_length_15078_cov_4.529993 242..372 +
Gcaud1729.t1.exon3Gcaud1729.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1010_length_15078_cov_4.529993 485..555 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1729.t1.intron1Gcaud1729.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1010_length_15078_cov_4.529993 160..241 +
Gcaud1729.t1.intron2Gcaud1729.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1010_length_15078_cov_4.529993 373..484 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1729.t1.stop1Gcaud1729.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1010_length_15078_cov_4.529993 553..555 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1729.t1 ID=Gcaud1729.t1|Name=Gcaud1729.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=101bp
GRARSAEDIAKMTDSGKVTFKIVLTSDPKLPFKVVNVPEKAPFTAVLKFA
AEEFRVPAATSAIITNDGVGINPQQSAGNVFLKHGTELRLIPRDRVGSHI
*
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spliced messenger RNA

>Gcaud1729.t1 ID=Gcaud1729.t1|Name=Gcaud1729.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=303bp|location=Sequence derived from alignment at NODE_1010_length_15078_cov_4.529993:59..555+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
GGACGAGCACGTTCCGCCGAAGACATTGCAAAAATGACCGACAGTGGCAA
AGTTACCTTCAAAATCGTTCTCACATCCGACCCGAAGCTTCCTTTTAAGG
TAGTTAATGTGCCTGAAAAGGCTCCATTTACTGCGGTGCTTAAGTTCGCA
GCGGAAGAGTTTCGAGTACCGGCGGCTACCAGTGCAATCATCACCAACGA
CGGAGTGGGAATCAACCCGCAGCAGAGTGCAGGAAATGTTTTCTTGAAAC
ACGGCACCGAGCTTCGGCTCATTCCTCGTGATCGCGTAGGGAGCCACATT
TGA
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protein sequence of Gcaud1729.t1

>Gcaud1729.t1 ID=Gcaud1729.t1|Name=Gcaud1729.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=101bp
GRARSAEDIAKMTDSGKVTFKIVLTSDPKLPFKVVNVPEKAPFTAVLKFA
AEEFRVPAATSAIITNDGVGINPQQSAGNVFLKHGTELRLIPRDRVGSHI
*
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mRNA from alignment at NODE_1010_length_15078_cov_4.529993:59..555+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1729.t1 ID=Gcaud1729.t1|Name=Gcaud1729.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=497bp|location=Sequence derived from alignment at NODE_1010_length_15078_cov_4.529993:59..555+ (Gracilaria caudata M_176_S67 male)
GGACGAGCACGTTCCGCCGAAGACATTGCAAAAATGACCGACAGTGGCAA
AGTTACCTTCAAAATCGTTCTCACATCCGACCCGAAGCTTCCTTTTAAGG
TGTAAGTTCAAGTCCTAACTAATAGCAACTCGGCATTTTGTTTCTGCTTC
TAACTAAAAGTGGCTTTGCATAATGCGTTTTAGAGTTAATGTGCCTGAAA
AGGCTCCATTTACTGCGGTGCTTAAGTTCGCAGCGGAAGAGTTTCGAGTA
CCGGCGGCTACCAGTGCAATCATCACCAACGACGGAGTGGGAATCAACCC
GCAGCAGAGTGCAGGTACGTCCCTTTTTTGTTGTGAGCAGCGAATAACAA
CCCATATTCTTGCCAAATGCGTGGAGCTCTGACGTTTTGCTGTGCACTGT
GTATCACGGTGCGTTGCGACGAAAAGGAAATGTTTTCTTGAAACACGGCA
CCGAGCTTCGGCTCATTCCTCGTGATCGCGTAGGGAGCCACATTTGA
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Coding sequence (CDS) from alignment at NODE_1010_length_15078_cov_4.529993:59..555+

>Gcaud1729.t1 ID=Gcaud1729.t1|Name=Gcaud1729.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=303bp|location=Sequence derived from alignment at NODE_1010_length_15078_cov_4.529993:59..555+ (Gracilaria caudata M_176_S67 male)
GGACGAGCACGTTCCGCCGAAGACATTGCAAAAATGACCGACAGTGGCAA
AGTTACCTTCAAAATCGTTCTCACATCCGACCCGAAGCTTCCTTTTAAGG
TAGTTAATGTGCCTGAAAAGGCTCCATTTACTGCGGTGCTTAAGTTCGCA
GCGGAAGAGTTTCGAGTACCGGCGGCTACCAGTGCAATCATCACCAACGA
CGGAGTGGGAATCAACCCGCAGCAGAGTGCAGGAAATGTTTTCTTGAAAC
ACGGCACCGAGCTTCGGCTCATTCCTCGTGATCGCGTAGGGAGCCACATT
TGA
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