Gcaud1727.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1727.t1
Unique NameGcaud1727.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length185
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_994_length_15385_cov_4.714921contigNODE_994_length_15385_cov_4.714921:13408..14060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR425CT
PFAMsSpoU_methylase
Max annot lvl2759|Eukaryota
KEGG koko:K03216
Evalue4.62e-40
EggNOG OGsCOG0219@1|root,2QQ5S@2759|Eukaryota
EC2.1.1.207
DescriptionSpoU rRNA Methylase family
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1727Gcaud1727Gracilaria caudata M_176_S67 malegeneNODE_994_length_15385_cov_4.714921 13408..14060 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1727.t1Gcaud1727.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_994_length_15385_cov_4.714921 13408..14060 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1727.t1.stop1Gcaud1727.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_994_length_15385_cov_4.714921 13408..13410 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1727.t1.CDS1Gcaud1727.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_994_length_15385_cov_4.714921 13408..13503 -
Gcaud1727.t1.CDS2Gcaud1727.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_994_length_15385_cov_4.714921 13602..14060 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1727.t1.exon1Gcaud1727.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_994_length_15385_cov_4.714921 13408..13503 -
Gcaud1727.t1.exon2Gcaud1727.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_994_length_15385_cov_4.714921 13602..14060 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1727.t1.intron1Gcaud1727.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_994_length_15385_cov_4.714921 13504..13601 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1727.t1.start1Gcaud1727.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_994_length_15385_cov_4.714921 14058..14060 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1727.t1 ID=Gcaud1727.t1|Name=Gcaud1727.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=185bp
MDGEKLLHIVFVNPQIHWNTGNIGRTCLGLGAALHLVGPMGFSLDERQVR
RAGLDYWQHVDLHVYDDWLQFASGKMKDLGGTRLFFTKFGEQCATEIQWP
TEGKIVLIFGSEVDGFDSIRYWLDNDGCDERRVAFPMVDDRFRSFNLSTT
ASMALWDAYKCVTVRGNSRRGHNIAQIDNSVALR*
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spliced messenger RNA

>Gcaud1727.t1 ID=Gcaud1727.t1|Name=Gcaud1727.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=555bp|location=Sequence derived from alignment at NODE_994_length_15385_cov_4.714921:13408..14060- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGGGGAGAAGTTGTTGCACATTGTTTTCGTTAATCCACAGATACA
TTGGAACACCGGAAATATCGGACGTACGTGTTTAGGATTAGGAGCAGCGC
TTCATCTCGTTGGACCGATGGGGTTTTCCCTGGACGAACGACAAGTTCGT
CGAGCGGGTCTAGATTATTGGCAGCACGTTGATTTGCATGTGTATGACGA
CTGGTTGCAATTTGCAAGCGGGAAGATGAAAGACCTGGGAGGAACAAGAT
TGTTCTTTACCAAGTTTGGAGAGCAATGTGCTACGGAGATCCAGTGGCCG
ACGGAAGGAAAGATTGTTCTGATATTCGGGAGTGAGGTGGATGGGTTTGA
TAGCATTCGGTATTGGCTTGATAACGACGGGTGCGATGAGAGACGCGTTG
CATTCCCTATGGTTGATGACCGTTTTCGTAGCTTCAACCTCAGTACCACA
GCGAGTATGGCCTTGTGGGATGCGTATAAATGCGTGACGGTGCGAGGAAA
CTCACGACGTGGACACAATATTGCACAAATCGACAATTCTGTTGCCCTTC
GATGA
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protein sequence of Gcaud1727.t1

>Gcaud1727.t1 ID=Gcaud1727.t1|Name=Gcaud1727.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=185bp
MDGEKLLHIVFVNPQIHWNTGNIGRTCLGLGAALHLVGPMGFSLDERQVR
RAGLDYWQHVDLHVYDDWLQFASGKMKDLGGTRLFFTKFGEQCATEIQWP
TEGKIVLIFGSEVDGFDSIRYWLDNDGCDERRVAFPMVDDRFRSFNLSTT
ASMALWDAYKCVTVRGNSRRGHNIAQIDNSVALR*
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mRNA from alignment at NODE_994_length_15385_cov_4.714921:13408..14060-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1727.t1 ID=Gcaud1727.t1|Name=Gcaud1727.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=653bp|location=Sequence derived from alignment at NODE_994_length_15385_cov_4.714921:13408..14060- (Gracilaria caudata M_176_S67 male)
ATGGATGGGGAGAAGTTGTTGCACATTGTTTTCGTTAATCCACAGATACA
TTGGAACACCGGAAATATCGGACGTACGTGTTTAGGATTAGGAGCAGCGC
TTCATCTCGTTGGACCGATGGGGTTTTCCCTGGACGAACGACAAGTTCGT
CGAGCGGGTCTAGATTATTGGCAGCACGTTGATTTGCATGTGTATGACGA
CTGGTTGCAATTTGCAAGCGGGAAGATGAAAGACCTGGGAGGAACAAGAT
TGTTCTTTACCAAGTTTGGAGAGCAATGTGCTACGGAGATCCAGTGGCCG
ACGGAAGGAAAGATTGTTCTGATATTCGGGAGTGAGGTGGATGGGTTTGA
TAGCATTCGGTATTGGCTTGATAACGACGGGTGCGATGAGAGACGCGTTG
CATTCCCTATGGTTGATGACCGTTTTCGTAGCTTCAACCTCAGTACCACA
GCGAGTATGGTAAGTAGACCAGTTTTCCGCTACTTCGAACTCAAACACAG
TTCTTTGAGTTTCTTTGTTTGCCTTGCTGACTGAAAAACTAACTTGGATG
GGAACAGGCCTTGTGGGATGCGTATAAATGCGTGACGGTGCGAGGAAACT
CACGACGTGGACACAATATTGCACAAATCGACAATTCTGTTGCCCTTCGA
TGA
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Coding sequence (CDS) from alignment at NODE_994_length_15385_cov_4.714921:13408..14060-

>Gcaud1727.t1 ID=Gcaud1727.t1|Name=Gcaud1727.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=555bp|location=Sequence derived from alignment at NODE_994_length_15385_cov_4.714921:13408..14060- (Gracilaria caudata M_176_S67 male)
ATGGATGGGGAGAAGTTGTTGCACATTGTTTTCGTTAATCCACAGATACA
TTGGAACACCGGAAATATCGGACGTACGTGTTTAGGATTAGGAGCAGCGC
TTCATCTCGTTGGACCGATGGGGTTTTCCCTGGACGAACGACAAGTTCGT
CGAGCGGGTCTAGATTATTGGCAGCACGTTGATTTGCATGTGTATGACGA
CTGGTTGCAATTTGCAAGCGGGAAGATGAAAGACCTGGGAGGAACAAGAT
TGTTCTTTACCAAGTTTGGAGAGCAATGTGCTACGGAGATCCAGTGGCCG
ACGGAAGGAAAGATTGTTCTGATATTCGGGAGTGAGGTGGATGGGTTTGA
TAGCATTCGGTATTGGCTTGATAACGACGGGTGCGATGAGAGACGCGTTG
CATTCCCTATGGTTGATGACCGTTTTCGTAGCTTCAACCTCAGTACCACA
GCGAGTATGGCCTTGTGGGATGCGTATAAATGCGTGACGGTGCGAGGAAA
CTCACGACGTGGACACAATATTGCACAAATCGACAATTCTGTTGCCCTTC
GATGA
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