Gcaud1726.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1726.t1
Unique Name	Gcaud1726.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	477

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_994_length_15385_cov_4.714921	contig	NODE_994_length_15385_cov_4.714921:10845..12275 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3712.Bo1g001040.1
PFAMs	M20_dimer,Peptidase_M20
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00064,RC00300
KEGG ko	ko:K01436,ko:K14677
KEGG Reaction	R00669,R10553
KEGG Pathway	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230
KEGG Module	M00028
GOs	GO:0003674,GO:0003824,GO:0004046,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0016787,GO:0016810,GO:0016811,GO:0031982,GO:0042802,GO:0043226,GO:0043227,GO:0043230,GO:0044421,GO:0070062,GO:1903561
Evalue	2e-109
EggNOG OGs	COG0624@1\|root,KOG2275@2759\|Eukaryota,37I61@33090\|Viridiplantae,3GERC@35493\|Streptophyta,3HN81@3699\|Brassicales
EC	3.5.1.14
Description	N-acyl-L-amino-acid amidohydrolase
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000,ko01002,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1726	Gcaud1726	Gracilaria caudata M_176_S67 male	gene	NODE_994_length_15385_cov_4.714921 10845..12275 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1726.t1.start1	Gcaud1726.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_994_length_15385_cov_4.714921 10845..10847 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1726.t1.CDS1	Gcaud1726.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_994_length_15385_cov_4.714921 10845..12275 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1726.t1.exon1	Gcaud1726.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_994_length_15385_cov_4.714921 10845..12275 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1726.t1.stop1	Gcaud1726.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_994_length_15385_cov_4.714921 12273..12275 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1726.t1	Gcaud1726.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_994_length_15385_cov_4.714921 10845..12275 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_994_length_15385_cov_4.714921:10845..12275+
coding sequence from alignment at NODE_994_length_15385_cov_4.714921:10845..12275+

mRNA sequence

>Gcaud1726.t1 ID=Gcaud1726.t1|Name=Gcaud1726.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=477bp
MTPSARSVAAFLTVLIAPILYVGREKISLEVPSAITPVNPSVHRLQEYLR
IRTDHPNPSYLEAQLFLNRTVGALLPNASFSAHTFVPGKPVLLIRVDGTD
LQLPALLLNSHTDVVPSEDAKWDWPPYAALTVLKEGQLRVYARGSQDMKS
VGLQYVEALSELLRTDWRPKRTIYVSFVPDEEIGGKDGMGQLIESELFPS
LNIGVALDEGLPRDDGTFNCYYGERQTWWLSVRVADRPGHGSNLPESTAA
ATLNQIISNTMRFRDRQLQRLREGVDMGEIIGVNVAYLKSGYPDDKISSG
FTMNVIPSVAEAGFDIRVPPTVNASVVDDEIESWIKCGDKRCSGVTTSYV
IKVNNAHVTSRNPEKNPYATPFMNGLKKAGIADNELNHGIFRAATDARFL
RLKGIPSFGFSPINKSPNLLHKHNEYLPVDTYVRGIRIYQSIIREIADYE
PEVVSDTCKTCEHETDRMEPLEKEEL*

spliced messenger RNA

>Gcaud1726.t1 ID=Gcaud1726.t1|Name=Gcaud1726.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1431bp|location=Sequence derived from alignment at NODE_994_length_15385_cov_4.714921:10845..12275+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCCTTCTGCACGCTCGGTCGCGGCCTTTCTGACCGTCCTAATCGC
CCCGATTCTCTACGTCGGCCGCGAAAAGATCTCCCTGGAAGTACCAAGCG
CCATAACTCCCGTCAATCCTTCCGTCCATCGTCTTCAAGAGTACCTTCGC
ATTCGAACTGATCATCCAAACCCGTCCTATCTCGAGGCGCAATTGTTTCT
GAATCGAACCGTCGGTGCCTTACTACCAAATGCTTCATTTTCAGCGCACA
CCTTTGTGCCGGGAAAACCTGTATTGCTTATTAGGGTCGATGGAACTGAT
TTGCAGCTACCTGCACTTCTGCTCAATTCTCACACAGATGTGGTGCCTTC
CGAGGATGCAAAATGGGATTGGCCTCCGTATGCTGCGCTCACGGTGCTTA
AAGAGGGCCAACTTCGAGTTTATGCGCGCGGATCACAAGATATGAAGAGC
GTTGGTCTTCAGTATGTAGAAGCTCTTTCGGAGCTTCTGCGCACTGACTG
GCGTCCGAAGCGCACCATATACGTATCCTTCGTGCCTGATGAAGAGATAG
GTGGCAAGGACGGTATGGGACAGCTTATTGAAAGCGAACTCTTTCCGAGC
TTGAATATTGGTGTTGCTCTTGATGAAGGTCTGCCTAGAGACGATGGTAC
GTTCAACTGCTATTACGGTGAACGGCAGACATGGTGGCTTTCAGTCAGGG
TTGCTGATCGTCCAGGTCACGGATCTAATCTTCCGGAAAGCACCGCCGCT
GCTACGCTTAATCAAATCATTTCCAACACAATGCGATTCAGAGATCGCCA
GCTCCAGCGATTGAGGGAGGGGGTTGATATGGGTGAAATTATTGGCGTTA
ACGTTGCGTACCTGAAGTCTGGATATCCCGACGACAAGATATCAAGTGGA
TTTACGATGAACGTCATTCCGTCTGTTGCCGAGGCTGGGTTTGACATTCG
CGTTCCGCCAACCGTAAATGCAAGTGTAGTGGACGATGAGATTGAAAGTT
GGATCAAGTGCGGGGACAAAAGATGCTCTGGAGTAACCACGAGTTATGTC
ATAAAAGTGAACAATGCACATGTAACAAGTCGCAATCCAGAGAAGAATCC
GTATGCGACTCCGTTCATGAACGGCCTCAAAAAGGCGGGAATTGCTGATA
ACGAGCTCAACCACGGTATCTTCAGAGCCGCTACTGACGCCAGATTTTTG
AGATTGAAGGGGATACCGAGTTTTGGATTTTCTCCGATAAACAAGTCTCC
GAATTTGTTGCACAAGCATAATGAATATCTTCCTGTAGATACATATGTGC
GGGGCATTCGTATATATCAGAGTATTATTCGGGAAATAGCTGACTATGAG
CCGGAAGTAGTATCAGATACATGCAAAACTTGTGAGCATGAAACGGACAG
AATGGAACCCTTGGAGAAGGAGGAACTGTGA

protein sequence of Gcaud1726.t1

>Gcaud1726.t1 ID=Gcaud1726.t1|Name=Gcaud1726.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=477bp
MTPSARSVAAFLTVLIAPILYVGREKISLEVPSAITPVNPSVHRLQEYLR
IRTDHPNPSYLEAQLFLNRTVGALLPNASFSAHTFVPGKPVLLIRVDGTD
LQLPALLLNSHTDVVPSEDAKWDWPPYAALTVLKEGQLRVYARGSQDMKS
VGLQYVEALSELLRTDWRPKRTIYVSFVPDEEIGGKDGMGQLIESELFPS
LNIGVALDEGLPRDDGTFNCYYGERQTWWLSVRVADRPGHGSNLPESTAA
ATLNQIISNTMRFRDRQLQRLREGVDMGEIIGVNVAYLKSGYPDDKISSG
FTMNVIPSVAEAGFDIRVPPTVNASVVDDEIESWIKCGDKRCSGVTTSYV
IKVNNAHVTSRNPEKNPYATPFMNGLKKAGIADNELNHGIFRAATDARFL
RLKGIPSFGFSPINKSPNLLHKHNEYLPVDTYVRGIRIYQSIIREIADYE
PEVVSDTCKTCEHETDRMEPLEKEEL*

mRNA from alignment at NODE_994_length_15385_cov_4.714921:10845..12275+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1726.t1 ID=Gcaud1726.t1|Name=Gcaud1726.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1431bp|location=Sequence derived from alignment at NODE_994_length_15385_cov_4.714921:10845..12275+ (Gracilaria caudata M_176_S67 male)
ATGACGCCTTCTGCACGCTCGGTCGCGGCCTTTCTGACCGTCCTAATCGC
CCCGATTCTCTACGTCGGCCGCGAAAAGATCTCCCTGGAAGTACCAAGCG
CCATAACTCCCGTCAATCCTTCCGTCCATCGTCTTCAAGAGTACCTTCGC
ATTCGAACTGATCATCCAAACCCGTCCTATCTCGAGGCGCAATTGTTTCT
GAATCGAACCGTCGGTGCCTTACTACCAAATGCTTCATTTTCAGCGCACA
CCTTTGTGCCGGGAAAACCTGTATTGCTTATTAGGGTCGATGGAACTGAT
TTGCAGCTACCTGCACTTCTGCTCAATTCTCACACAGATGTGGTGCCTTC
CGAGGATGCAAAATGGGATTGGCCTCCGTATGCTGCGCTCACGGTGCTTA
AAGAGGGCCAACTTCGAGTTTATGCGCGCGGATCACAAGATATGAAGAGC
GTTGGTCTTCAGTATGTAGAAGCTCTTTCGGAGCTTCTGCGCACTGACTG
GCGTCCGAAGCGCACCATATACGTATCCTTCGTGCCTGATGAAGAGATAG
GTGGCAAGGACGGTATGGGACAGCTTATTGAAAGCGAACTCTTTCCGAGC
TTGAATATTGGTGTTGCTCTTGATGAAGGTCTGCCTAGAGACGATGGTAC
GTTCAACTGCTATTACGGTGAACGGCAGACATGGTGGCTTTCAGTCAGGG
TTGCTGATCGTCCAGGTCACGGATCTAATCTTCCGGAAAGCACCGCCGCT
GCTACGCTTAATCAAATCATTTCCAACACAATGCGATTCAGAGATCGCCA
GCTCCAGCGATTGAGGGAGGGGGTTGATATGGGTGAAATTATTGGCGTTA
ACGTTGCGTACCTGAAGTCTGGATATCCCGACGACAAGATATCAAGTGGA
TTTACGATGAACGTCATTCCGTCTGTTGCCGAGGCTGGGTTTGACATTCG
CGTTCCGCCAACCGTAAATGCAAGTGTAGTGGACGATGAGATTGAAAGTT
GGATCAAGTGCGGGGACAAAAGATGCTCTGGAGTAACCACGAGTTATGTC
ATAAAAGTGAACAATGCACATGTAACAAGTCGCAATCCAGAGAAGAATCC
GTATGCGACTCCGTTCATGAACGGCCTCAAAAAGGCGGGAATTGCTGATA
ACGAGCTCAACCACGGTATCTTCAGAGCCGCTACTGACGCCAGATTTTTG
AGATTGAAGGGGATACCGAGTTTTGGATTTTCTCCGATAAACAAGTCTCC
GAATTTGTTGCACAAGCATAATGAATATCTTCCTGTAGATACATATGTGC
GGGGCATTCGTATATATCAGAGTATTATTCGGGAAATAGCTGACTATGAG
CCGGAAGTAGTATCAGATACATGCAAAACTTGTGAGCATGAAACGGACAG
AATGGAACCCTTGGAGAAGGAGGAACTGTGA

Coding sequence (CDS) from alignment at NODE_994_length_15385_cov_4.714921:10845..12275+

>Gcaud1726.t1 ID=Gcaud1726.t1|Name=Gcaud1726.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1431bp|location=Sequence derived from alignment at NODE_994_length_15385_cov_4.714921:10845..12275+ (Gracilaria caudata M_176_S67 male)
ATGACGCCTTCTGCACGCTCGGTCGCGGCCTTTCTGACCGTCCTAATCGC
CCCGATTCTCTACGTCGGCCGCGAAAAGATCTCCCTGGAAGTACCAAGCG
CCATAACTCCCGTCAATCCTTCCGTCCATCGTCTTCAAGAGTACCTTCGC
ATTCGAACTGATCATCCAAACCCGTCCTATCTCGAGGCGCAATTGTTTCT
GAATCGAACCGTCGGTGCCTTACTACCAAATGCTTCATTTTCAGCGCACA
CCTTTGTGCCGGGAAAACCTGTATTGCTTATTAGGGTCGATGGAACTGAT
TTGCAGCTACCTGCACTTCTGCTCAATTCTCACACAGATGTGGTGCCTTC
CGAGGATGCAAAATGGGATTGGCCTCCGTATGCTGCGCTCACGGTGCTTA
AAGAGGGCCAACTTCGAGTTTATGCGCGCGGATCACAAGATATGAAGAGC
GTTGGTCTTCAGTATGTAGAAGCTCTTTCGGAGCTTCTGCGCACTGACTG
GCGTCCGAAGCGCACCATATACGTATCCTTCGTGCCTGATGAAGAGATAG
GTGGCAAGGACGGTATGGGACAGCTTATTGAAAGCGAACTCTTTCCGAGC
TTGAATATTGGTGTTGCTCTTGATGAAGGTCTGCCTAGAGACGATGGTAC
GTTCAACTGCTATTACGGTGAACGGCAGACATGGTGGCTTTCAGTCAGGG
TTGCTGATCGTCCAGGTCACGGATCTAATCTTCCGGAAAGCACCGCCGCT
GCTACGCTTAATCAAATCATTTCCAACACAATGCGATTCAGAGATCGCCA
GCTCCAGCGATTGAGGGAGGGGGTTGATATGGGTGAAATTATTGGCGTTA
ACGTTGCGTACCTGAAGTCTGGATATCCCGACGACAAGATATCAAGTGGA
TTTACGATGAACGTCATTCCGTCTGTTGCCGAGGCTGGGTTTGACATTCG
CGTTCCGCCAACCGTAAATGCAAGTGTAGTGGACGATGAGATTGAAAGTT
GGATCAAGTGCGGGGACAAAAGATGCTCTGGAGTAACCACGAGTTATGTC
ATAAAAGTGAACAATGCACATGTAACAAGTCGCAATCCAGAGAAGAATCC
GTATGCGACTCCGTTCATGAACGGCCTCAAAAAGGCGGGAATTGCTGATA
ACGAGCTCAACCACGGTATCTTCAGAGCCGCTACTGACGCCAGATTTTTG
AGATTGAAGGGGATACCGAGTTTTGGATTTTCTCCGATAAACAAGTCTCC
GAATTTGTTGCACAAGCATAATGAATATCTTCCTGTAGATACATATGTGC
GGGGCATTCGTATATATCAGAGTATTATTCGGGAAATAGCTGACTATGAG
CCGGAAGTAGTATCAGATACATGCAAAACTTGTGAGCATGAAACGGACAG
AATGGAACCCTTGGAGAAGGAGGAACTGTGA