Gcaud1721.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1721.t1
Unique NameGcaud1721.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length258
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_849_length_17037_cov_4.361560contigNODE_849_length_17037_cov_4.361560:10468..11241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX45793
Preferred namePSMA3
PFAMsProteasome,Proteasome_A_N
Max annot lvl2759|Eukaryota
KEGG koko:K01537,ko:K02727,ko:K03868
KEGG TC3.A.3.2
KEGG Pathwayko03050,ko03420,ko04066,ko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04341,ko04350,ko04710,ko05200,ko05211,map03050,map03420,map04066,map04110,map04111,map04114,map04120,map04141,map04310,map04341,map04350,map04710,map05200,map05211
KEGG ModuleM00337,M00340,M00379,M00380,M00381,M00382,M00383,M00384,M00385,M00386,M00387,M00407,M00411
GOsGO:0000003,GO:0000502,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005839,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0007088,GO:0007276,GO:0007281,GO:0007292,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009409,GO:0009628,GO:0009888,GO:0009896,GO:0009987,GO:0010035,GO:0010038,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016020,GO:0016579,GO:0019222,GO:0019538,GO:0019773,GO:0019899,GO:0019941,GO:0019953,GO:0022412,GO:0022414,GO:0030071,GO:0030154,GO:0030162,GO:0030163,GO:0030707,GO:0030855,GO:0031090,GO:0031331,GO:0031597,GO:0031625,GO:0031974,GO:0031981,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0036211,GO:0042175,GO:0042221,GO:0042802,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045202,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046686,GO:0048046,GO:0048468,GO:0048477,GO:0048518,GO:0048522,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051246,GO:0051247,GO:0051336,GO:0051603,GO:0051704,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0052547,GO:0052548,GO:0060255,GO:0060429,GO:0062033,GO:0065007,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0090068,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
Evalue3e-93
EggNOG OGsCOG0638@1|root,KOG0184@2759|Eukaryota
EC2.3.2.32,3.4.25.1,3.6.3.8
DescriptionThe proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051,ko03400,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1721Gcaud1721Gracilaria caudata M_176_S67 malegeneNODE_849_length_17037_cov_4.361560 10468..11241 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1721.t1.start1Gcaud1721.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_849_length_17037_cov_4.361560 10468..10470 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1721.t1.CDS1Gcaud1721.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_849_length_17037_cov_4.361560 10468..11241 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1721.t1.exon1Gcaud1721.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_849_length_17037_cov_4.361560 10468..11241 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1721.t1.stop1Gcaud1721.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_849_length_17037_cov_4.361560 11239..11241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1721.t1Gcaud1721.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_849_length_17037_cov_4.361560 10468..11241 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1721.t1 ID=Gcaud1721.t1|Name=Gcaud1721.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=258bp
MASIGTGYDLSSTTFSPDGRVFQIEYAAKSVENSGTCMGIRCKDGVVLAL
EKTIISKMLVPGTLRRSHIVDKHASLIVCGLISDGRVIVDRARKECENYL
DFYGRPIPGAILADRLAHFVHLYTLHWHVRPFGCAILLGVHNGEKEGAQL
YMIEPSGVAYRYYACAYGKGKQAARTELEKLSLTNKEGAPQIACEQAIKD
LAKIVVSVHDDSKDKEYEIEMIWVRDGQPAAMVPRDVVQKIHEEAKREAE
ADSDMEE*
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spliced messenger RNA

>Gcaud1721.t1 ID=Gcaud1721.t1|Name=Gcaud1721.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=774bp|location=Sequence derived from alignment at NODE_849_length_17037_cov_4.361560:10468..11241+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCCATTGGTACTGGTTACGATCTTTCATCCACGACCTTCTCACC
GGATGGACGCGTGTTTCAGATCGAGTATGCCGCAAAATCAGTTGAGAACT
CGGGTACATGTATGGGAATCAGATGCAAAGACGGCGTTGTGCTAGCGTTG
GAGAAGACCATCATTTCAAAGATGCTTGTGCCCGGCACGCTGCGTCGTTC
ACACATTGTCGATAAGCATGCGTCGCTCATCGTTTGCGGTTTGATCTCCG
ATGGGCGAGTGATTGTCGACCGCGCTCGTAAAGAATGCGAAAACTATCTT
GACTTTTACGGCAGACCTATCCCTGGCGCCATTCTTGCCGATCGTTTGGC
ACATTTCGTGCACCTCTATACATTACATTGGCACGTTCGTCCTTTTGGTT
GTGCAATTTTGTTGGGTGTTCATAACGGAGAAAAAGAGGGCGCACAGCTT
TATATGATTGAACCGAGCGGTGTTGCGTACAGGTATTATGCGTGCGCCTA
CGGAAAGGGCAAGCAAGCGGCCCGAACCGAACTGGAAAAGCTTTCTCTCA
CCAACAAAGAAGGAGCGCCCCAGATCGCCTGCGAACAGGCAATTAAAGAT
TTGGCCAAGATCGTTGTAAGCGTCCATGATGACAGTAAGGACAAAGAATA
TGAAATTGAAATGATTTGGGTTAGGGATGGTCAGCCTGCAGCTATGGTCC
CACGAGATGTAGTACAAAAGATTCATGAAGAGGCAAAGCGAGAAGCTGAG
GCTGATTCTGACATGGAAGAGTAA
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protein sequence of Gcaud1721.t1

>Gcaud1721.t1 ID=Gcaud1721.t1|Name=Gcaud1721.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=258bp
MASIGTGYDLSSTTFSPDGRVFQIEYAAKSVENSGTCMGIRCKDGVVLAL
EKTIISKMLVPGTLRRSHIVDKHASLIVCGLISDGRVIVDRARKECENYL
DFYGRPIPGAILADRLAHFVHLYTLHWHVRPFGCAILLGVHNGEKEGAQL
YMIEPSGVAYRYYACAYGKGKQAARTELEKLSLTNKEGAPQIACEQAIKD
LAKIVVSVHDDSKDKEYEIEMIWVRDGQPAAMVPRDVVQKIHEEAKREAE
ADSDMEE*
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mRNA from alignment at NODE_849_length_17037_cov_4.361560:10468..11241+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1721.t1 ID=Gcaud1721.t1|Name=Gcaud1721.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=774bp|location=Sequence derived from alignment at NODE_849_length_17037_cov_4.361560:10468..11241+ (Gracilaria caudata M_176_S67 male)
ATGGCATCCATTGGTACTGGTTACGATCTTTCATCCACGACCTTCTCACC
GGATGGACGCGTGTTTCAGATCGAGTATGCCGCAAAATCAGTTGAGAACT
CGGGTACATGTATGGGAATCAGATGCAAAGACGGCGTTGTGCTAGCGTTG
GAGAAGACCATCATTTCAAAGATGCTTGTGCCCGGCACGCTGCGTCGTTC
ACACATTGTCGATAAGCATGCGTCGCTCATCGTTTGCGGTTTGATCTCCG
ATGGGCGAGTGATTGTCGACCGCGCTCGTAAAGAATGCGAAAACTATCTT
GACTTTTACGGCAGACCTATCCCTGGCGCCATTCTTGCCGATCGTTTGGC
ACATTTCGTGCACCTCTATACATTACATTGGCACGTTCGTCCTTTTGGTT
GTGCAATTTTGTTGGGTGTTCATAACGGAGAAAAAGAGGGCGCACAGCTT
TATATGATTGAACCGAGCGGTGTTGCGTACAGGTATTATGCGTGCGCCTA
CGGAAAGGGCAAGCAAGCGGCCCGAACCGAACTGGAAAAGCTTTCTCTCA
CCAACAAAGAAGGAGCGCCCCAGATCGCCTGCGAACAGGCAATTAAAGAT
TTGGCCAAGATCGTTGTAAGCGTCCATGATGACAGTAAGGACAAAGAATA
TGAAATTGAAATGATTTGGGTTAGGGATGGTCAGCCTGCAGCTATGGTCC
CACGAGATGTAGTACAAAAGATTCATGAAGAGGCAAAGCGAGAAGCTGAG
GCTGATTCTGACATGGAAGAGTAA
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Coding sequence (CDS) from alignment at NODE_849_length_17037_cov_4.361560:10468..11241+

>Gcaud1721.t1 ID=Gcaud1721.t1|Name=Gcaud1721.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=774bp|location=Sequence derived from alignment at NODE_849_length_17037_cov_4.361560:10468..11241+ (Gracilaria caudata M_176_S67 male)
ATGGCATCCATTGGTACTGGTTACGATCTTTCATCCACGACCTTCTCACC
GGATGGACGCGTGTTTCAGATCGAGTATGCCGCAAAATCAGTTGAGAACT
CGGGTACATGTATGGGAATCAGATGCAAAGACGGCGTTGTGCTAGCGTTG
GAGAAGACCATCATTTCAAAGATGCTTGTGCCCGGCACGCTGCGTCGTTC
ACACATTGTCGATAAGCATGCGTCGCTCATCGTTTGCGGTTTGATCTCCG
ATGGGCGAGTGATTGTCGACCGCGCTCGTAAAGAATGCGAAAACTATCTT
GACTTTTACGGCAGACCTATCCCTGGCGCCATTCTTGCCGATCGTTTGGC
ACATTTCGTGCACCTCTATACATTACATTGGCACGTTCGTCCTTTTGGTT
GTGCAATTTTGTTGGGTGTTCATAACGGAGAAAAAGAGGGCGCACAGCTT
TATATGATTGAACCGAGCGGTGTTGCGTACAGGTATTATGCGTGCGCCTA
CGGAAAGGGCAAGCAAGCGGCCCGAACCGAACTGGAAAAGCTTTCTCTCA
CCAACAAAGAAGGAGCGCCCCAGATCGCCTGCGAACAGGCAATTAAAGAT
TTGGCCAAGATCGTTGTAAGCGTCCATGATGACAGTAAGGACAAAGAATA
TGAAATTGAAATGATTTGGGTTAGGGATGGTCAGCCTGCAGCTATGGTCC
CACGAGATGTAGTACAAAAGATTCATGAAGAGGCAAAGCGAGAAGCTGAG
GCTGATTCTGACATGGAAGAGTAA
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