Gcaud1718.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1718.t1
Unique Name	Gcaud1718.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	583

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_849_length_17037_cov_4.361560	contig	NODE_849_length_17037_cov_4.361560:4628..6376 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005702540.1
PFAMs	WD40
Max annot lvl	2759\|Eukaryota
Evalue	1.39e-134
EggNOG OGs	KOG0266@1\|root,KOG0266@2759\|Eukaryota
Description	WD repeat-containing protein
COG category	B

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1718	Gcaud1718	Gracilaria caudata M_176_S67 male	gene	NODE_849_length_17037_cov_4.361560 4628..6376 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1718.t1.start1	Gcaud1718.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_849_length_17037_cov_4.361560 4628..4630 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1718.t1.CDS1	Gcaud1718.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_849_length_17037_cov_4.361560 4628..6376 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1718.t1.exon1	Gcaud1718.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_849_length_17037_cov_4.361560 4628..6376 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1718.t1.stop1	Gcaud1718.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_849_length_17037_cov_4.361560 6374..6376 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1718.t1	Gcaud1718.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_849_length_17037_cov_4.361560 4628..6376 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_849_length_17037_cov_4.361560:4628..6376+
coding sequence from alignment at NODE_849_length_17037_cov_4.361560:4628..6376+

mRNA sequence

>Gcaud1718.t1 ID=Gcaud1718.t1|Name=Gcaud1718.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=583bp
MDRRFSDRSLRAAVLDHSVFDPEDPNIKLDIVQAIIQYLHDEGYHDASTA
VQDETNVKIKNAASKRAQLRRMKSAILEGDWQEVEHLLSRTTFKSMKAFK
FAVHKQQFLELIDDQQSQKAFSILQRRLKELEAYARTPDEFRDMCYLLTC
KSVTDAPSFRDWDGIASSRAALVEQYSRLLDFDIFHRDGYLPNTRSVNGE
TLIEASDIPPARLVHLLQQALAFQIGSSRHAPKVPPRIGTLLEDYESVVV
PNKLQRAFIGHTGNVKCVTFVGEEGDTIASGSSDNSVRIWNTSTGAQKHI
LCGHTSRIWDVSATANGKLLASASGDGTIRVWDTGTLLEVHDAQEWPVKR
YDQMDGKSYINGDMGADAAVCRAVLHGHDSDVYAVRMQARGNAFASGGYD
RLVRFYDTETETLLKSFGGHKSSISSVGFNARGNLIVTGSKDSSIKFWDV
VSGLCVRTLSAHLGEVTSVEINESGSLMVSSSKDNSNRLWDIRMTKVLKR
FKGHQNTSKNFVRSAFGPRERVVIGGSEDGHVYIWDVESSEVLQKLGAAG
GTVYDVKWNARQSVLASCAQDGIVSLWCFDEA*

spliced messenger RNA

>Gcaud1718.t1 ID=Gcaud1718.t1|Name=Gcaud1718.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1749bp|location=Sequence derived from alignment at NODE_849_length_17037_cov_4.361560:4628..6376+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCGTCGCTTCAGTGACCGTTCCTTACGTGCCGCAGTTCTCGACCA
CTCCGTCTTCGACCCTGAGGACCCCAACATCAAGTTAGACATCGTCCAGG
CCATCATTCAGTACCTCCACGACGAGGGCTACCACGACGCCTCCACCGCC
GTCCAAGATGAGACTAACGTCAAGATCAAAAACGCTGCATCGAAACGCGC
GCAGCTGCGCCGGATGAAGAGCGCCATTCTCGAGGGCGATTGGCAGGAGG
TTGAGCACCTTCTTTCGCGCACCACCTTCAAGAGCATGAAGGCCTTCAAA
TTCGCGGTGCACAAGCAGCAATTCCTCGAGCTCATCGATGATCAGCAGAG
TCAGAAAGCGTTCTCCATTCTTCAGCGTCGCCTCAAAGAGCTTGAAGCGT
ACGCACGCACTCCGGACGAGTTTCGAGACATGTGCTATCTGCTCACGTGC
AAATCGGTCACAGATGCGCCGTCGTTTCGCGATTGGGATGGGATTGCATC
CAGCCGTGCTGCGCTCGTCGAGCAGTATTCCCGCCTCCTCGATTTTGACA
TTTTTCATCGAGATGGCTATCTTCCCAACACACGCTCAGTCAATGGTGAG
ACTTTGATAGAAGCCAGCGACATTCCGCCTGCCAGACTTGTTCATCTGCT
TCAACAAGCGCTAGCATTTCAGATTGGCTCATCCCGACACGCTCCAAAGG
TCCCACCGCGAATTGGCACATTGTTGGAGGACTACGAAAGCGTGGTAGTT
CCCAACAAGTTGCAGCGCGCTTTCATCGGGCACACGGGAAACGTCAAATG
CGTTACGTTTGTCGGGGAGGAGGGGGACACGATCGCAAGCGGCTCCAGCG
ACAACTCAGTGCGCATTTGGAATACAAGTACTGGTGCCCAGAAGCATATT
CTATGCGGGCATACATCGCGAATTTGGGACGTGAGCGCAACCGCTAATGG
AAAACTGCTGGCCAGTGCCAGTGGCGATGGTACCATTCGCGTCTGGGACA
CGGGCACCCTTTTGGAAGTGCATGACGCTCAGGAATGGCCCGTGAAAAGG
TATGACCAAATGGATGGCAAATCGTACATTAACGGAGATATGGGAGCAGA
TGCGGCCGTGTGTCGCGCTGTGTTACACGGTCACGACAGTGATGTATATG
CTGTGAGAATGCAGGCTCGGGGAAACGCGTTTGCTAGCGGTGGTTACGAT
AGATTGGTGCGCTTTTACGATACAGAAACAGAGACGTTGCTAAAAAGCTT
TGGAGGACATAAGAGCTCAATAAGCAGCGTGGGTTTCAACGCCAGGGGAA
ATTTGATTGTAACCGGAAGCAAAGATTCGAGCATCAAGTTTTGGGACGTG
GTGAGCGGTCTGTGCGTGCGAACGTTGAGTGCGCACTTGGGCGAGGTAAC
ATCTGTGGAAATCAATGAATCAGGGTCTTTGATGGTTTCAAGTTCAAAAG
ACAATTCGAATCGATTATGGGACATCCGGATGACAAAGGTGTTGAAGCGA
TTCAAGGGGCACCAGAATACCAGCAAAAACTTCGTGCGAAGCGCATTTGG
ACCTCGTGAACGTGTTGTAATCGGCGGCAGTGAAGACGGGCACGTGTACA
TTTGGGATGTAGAGAGCAGCGAAGTGTTACAAAAGCTGGGTGCGGCAGGA
GGCACTGTATACGACGTCAAGTGGAATGCGAGACAGAGCGTGTTAGCAAG
CTGCGCCCAAGACGGGATTGTGAGCCTGTGGTGCTTCGACGAGGCGTAG

protein sequence of Gcaud1718.t1

>Gcaud1718.t1 ID=Gcaud1718.t1|Name=Gcaud1718.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=583bp
MDRRFSDRSLRAAVLDHSVFDPEDPNIKLDIVQAIIQYLHDEGYHDASTA
VQDETNVKIKNAASKRAQLRRMKSAILEGDWQEVEHLLSRTTFKSMKAFK
FAVHKQQFLELIDDQQSQKAFSILQRRLKELEAYARTPDEFRDMCYLLTC
KSVTDAPSFRDWDGIASSRAALVEQYSRLLDFDIFHRDGYLPNTRSVNGE
TLIEASDIPPARLVHLLQQALAFQIGSSRHAPKVPPRIGTLLEDYESVVV
PNKLQRAFIGHTGNVKCVTFVGEEGDTIASGSSDNSVRIWNTSTGAQKHI
LCGHTSRIWDVSATANGKLLASASGDGTIRVWDTGTLLEVHDAQEWPVKR
YDQMDGKSYINGDMGADAAVCRAVLHGHDSDVYAVRMQARGNAFASGGYD
RLVRFYDTETETLLKSFGGHKSSISSVGFNARGNLIVTGSKDSSIKFWDV
VSGLCVRTLSAHLGEVTSVEINESGSLMVSSSKDNSNRLWDIRMTKVLKR
FKGHQNTSKNFVRSAFGPRERVVIGGSEDGHVYIWDVESSEVLQKLGAAG
GTVYDVKWNARQSVLASCAQDGIVSLWCFDEA*

mRNA from alignment at NODE_849_length_17037_cov_4.361560:4628..6376+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1718.t1 ID=Gcaud1718.t1|Name=Gcaud1718.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1749bp|location=Sequence derived from alignment at NODE_849_length_17037_cov_4.361560:4628..6376+ (Gracilaria caudata M_176_S67 male)
ATGGATCGTCGCTTCAGTGACCGTTCCTTACGTGCCGCAGTTCTCGACCA
CTCCGTCTTCGACCCTGAGGACCCCAACATCAAGTTAGACATCGTCCAGG
CCATCATTCAGTACCTCCACGACGAGGGCTACCACGACGCCTCCACCGCC
GTCCAAGATGAGACTAACGTCAAGATCAAAAACGCTGCATCGAAACGCGC
GCAGCTGCGCCGGATGAAGAGCGCCATTCTCGAGGGCGATTGGCAGGAGG
TTGAGCACCTTCTTTCGCGCACCACCTTCAAGAGCATGAAGGCCTTCAAA
TTCGCGGTGCACAAGCAGCAATTCCTCGAGCTCATCGATGATCAGCAGAG
TCAGAAAGCGTTCTCCATTCTTCAGCGTCGCCTCAAAGAGCTTGAAGCGT
ACGCACGCACTCCGGACGAGTTTCGAGACATGTGCTATCTGCTCACGTGC
AAATCGGTCACAGATGCGCCGTCGTTTCGCGATTGGGATGGGATTGCATC
CAGCCGTGCTGCGCTCGTCGAGCAGTATTCCCGCCTCCTCGATTTTGACA
TTTTTCATCGAGATGGCTATCTTCCCAACACACGCTCAGTCAATGGTGAG
ACTTTGATAGAAGCCAGCGACATTCCGCCTGCCAGACTTGTTCATCTGCT
TCAACAAGCGCTAGCATTTCAGATTGGCTCATCCCGACACGCTCCAAAGG
TCCCACCGCGAATTGGCACATTGTTGGAGGACTACGAAAGCGTGGTAGTT
CCCAACAAGTTGCAGCGCGCTTTCATCGGGCACACGGGAAACGTCAAATG
CGTTACGTTTGTCGGGGAGGAGGGGGACACGATCGCAAGCGGCTCCAGCG
ACAACTCAGTGCGCATTTGGAATACAAGTACTGGTGCCCAGAAGCATATT
CTATGCGGGCATACATCGCGAATTTGGGACGTGAGCGCAACCGCTAATGG
AAAACTGCTGGCCAGTGCCAGTGGCGATGGTACCATTCGCGTCTGGGACA
CGGGCACCCTTTTGGAAGTGCATGACGCTCAGGAATGGCCCGTGAAAAGG
TATGACCAAATGGATGGCAAATCGTACATTAACGGAGATATGGGAGCAGA
TGCGGCCGTGTGTCGCGCTGTGTTACACGGTCACGACAGTGATGTATATG
CTGTGAGAATGCAGGCTCGGGGAAACGCGTTTGCTAGCGGTGGTTACGAT
AGATTGGTGCGCTTTTACGATACAGAAACAGAGACGTTGCTAAAAAGCTT
TGGAGGACATAAGAGCTCAATAAGCAGCGTGGGTTTCAACGCCAGGGGAA
ATTTGATTGTAACCGGAAGCAAAGATTCGAGCATCAAGTTTTGGGACGTG
GTGAGCGGTCTGTGCGTGCGAACGTTGAGTGCGCACTTGGGCGAGGTAAC
ATCTGTGGAAATCAATGAATCAGGGTCTTTGATGGTTTCAAGTTCAAAAG
ACAATTCGAATCGATTATGGGACATCCGGATGACAAAGGTGTTGAAGCGA
TTCAAGGGGCACCAGAATACCAGCAAAAACTTCGTGCGAAGCGCATTTGG
ACCTCGTGAACGTGTTGTAATCGGCGGCAGTGAAGACGGGCACGTGTACA
TTTGGGATGTAGAGAGCAGCGAAGTGTTACAAAAGCTGGGTGCGGCAGGA
GGCACTGTATACGACGTCAAGTGGAATGCGAGACAGAGCGTGTTAGCAAG
CTGCGCCCAAGACGGGATTGTGAGCCTGTGGTGCTTCGACGAGGCGTAG

Coding sequence (CDS) from alignment at NODE_849_length_17037_cov_4.361560:4628..6376+

>Gcaud1718.t1 ID=Gcaud1718.t1|Name=Gcaud1718.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1749bp|location=Sequence derived from alignment at NODE_849_length_17037_cov_4.361560:4628..6376+ (Gracilaria caudata M_176_S67 male)
ATGGATCGTCGCTTCAGTGACCGTTCCTTACGTGCCGCAGTTCTCGACCA
CTCCGTCTTCGACCCTGAGGACCCCAACATCAAGTTAGACATCGTCCAGG
CCATCATTCAGTACCTCCACGACGAGGGCTACCACGACGCCTCCACCGCC
GTCCAAGATGAGACTAACGTCAAGATCAAAAACGCTGCATCGAAACGCGC
GCAGCTGCGCCGGATGAAGAGCGCCATTCTCGAGGGCGATTGGCAGGAGG
TTGAGCACCTTCTTTCGCGCACCACCTTCAAGAGCATGAAGGCCTTCAAA
TTCGCGGTGCACAAGCAGCAATTCCTCGAGCTCATCGATGATCAGCAGAG
TCAGAAAGCGTTCTCCATTCTTCAGCGTCGCCTCAAAGAGCTTGAAGCGT
ACGCACGCACTCCGGACGAGTTTCGAGACATGTGCTATCTGCTCACGTGC
AAATCGGTCACAGATGCGCCGTCGTTTCGCGATTGGGATGGGATTGCATC
CAGCCGTGCTGCGCTCGTCGAGCAGTATTCCCGCCTCCTCGATTTTGACA
TTTTTCATCGAGATGGCTATCTTCCCAACACACGCTCAGTCAATGGTGAG
ACTTTGATAGAAGCCAGCGACATTCCGCCTGCCAGACTTGTTCATCTGCT
TCAACAAGCGCTAGCATTTCAGATTGGCTCATCCCGACACGCTCCAAAGG
TCCCACCGCGAATTGGCACATTGTTGGAGGACTACGAAAGCGTGGTAGTT
CCCAACAAGTTGCAGCGCGCTTTCATCGGGCACACGGGAAACGTCAAATG
CGTTACGTTTGTCGGGGAGGAGGGGGACACGATCGCAAGCGGCTCCAGCG
ACAACTCAGTGCGCATTTGGAATACAAGTACTGGTGCCCAGAAGCATATT
CTATGCGGGCATACATCGCGAATTTGGGACGTGAGCGCAACCGCTAATGG
AAAACTGCTGGCCAGTGCCAGTGGCGATGGTACCATTCGCGTCTGGGACA
CGGGCACCCTTTTGGAAGTGCATGACGCTCAGGAATGGCCCGTGAAAAGG
TATGACCAAATGGATGGCAAATCGTACATTAACGGAGATATGGGAGCAGA
TGCGGCCGTGTGTCGCGCTGTGTTACACGGTCACGACAGTGATGTATATG
CTGTGAGAATGCAGGCTCGGGGAAACGCGTTTGCTAGCGGTGGTTACGAT
AGATTGGTGCGCTTTTACGATACAGAAACAGAGACGTTGCTAAAAAGCTT
TGGAGGACATAAGAGCTCAATAAGCAGCGTGGGTTTCAACGCCAGGGGAA
ATTTGATTGTAACCGGAAGCAAAGATTCGAGCATCAAGTTTTGGGACGTG
GTGAGCGGTCTGTGCGTGCGAACGTTGAGTGCGCACTTGGGCGAGGTAAC
ATCTGTGGAAATCAATGAATCAGGGTCTTTGATGGTTTCAAGTTCAAAAG
ACAATTCGAATCGATTATGGGACATCCGGATGACAAAGGTGTTGAAGCGA
TTCAAGGGGCACCAGAATACCAGCAAAAACTTCGTGCGAAGCGCATTTGG
ACCTCGTGAACGTGTTGTAATCGGCGGCAGTGAAGACGGGCACGTGTACA
TTTGGGATGTAGAGAGCAGCGAAGTGTTACAAAAGCTGGGTGCGGCAGGA
GGCACTGTATACGACGTCAAGTGGAATGCGAGACAGAGCGTGTTAGCAAG
CTGCGCCCAAGACGGGATTGTGAGCCTGTGGTGCTTCGACGAGGCGTAG