Gcaud1717.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1717.t2
Unique Name	Gcaud1717.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	377

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_849_length_17037_cov_4.361560	contig	NODE_849_length_17037_cov_4.361560:3299..4429 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1717	Gcaud1717	Gracilaria caudata M_176_S67 male	gene	NODE_849_length_17037_cov_4.361560 2237..4429 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1717.t2.start1	Gcaud1717.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_849_length_17037_cov_4.361560 3299..3301 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1717.t2.CDS1	Gcaud1717.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_849_length_17037_cov_4.361560 3299..4429 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1717.t2.exon1	Gcaud1717.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_849_length_17037_cov_4.361560 3299..4429 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1717.t2.stop1	Gcaud1717.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_849_length_17037_cov_4.361560 4427..4429 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1717.t2	Gcaud1717.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_849_length_17037_cov_4.361560 3299..4429 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_849_length_17037_cov_4.361560:3299..4429+
coding sequence from alignment at NODE_849_length_17037_cov_4.361560:3299..4429+

mRNA sequence

>Gcaud1717.t2 ID=Gcaud1717.t2|Name=Gcaud1717.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=377bp
MDVKFRDRVKIMRNTSEGRRRFVDLQKSTLYDWCMSLKVTEDFITVPLRI
DRAKYDSKMMEIARRGLGDDFTTARSVRADIVPAILSSKPWVKDGVMSKI
QGRHPVKLLCGGDVIKTEPISKTLFIYQVSSTWTKNEYPRSRQPLQMWVD
GYRTRALALLVFELAICGITTKQGYEELIDEFEQGIDLRGLYREGRLQRI
LNNVPIDRKWSDVRATVNSFNLSIAMEASVTRELIDLCMRSGHSQVFTAD
EYSVRGGYLKLYGVAPGEGIMKFDSMVNLAGLRYNDDEKTPFFIGPSGKW
YVSFYDVGGASHAHLHGKIEWRYPYSHMTAVTSSMWMATNKEITLSYPVE
ENAAFSKPCIHFAVEKARSRRGLALQ*

spliced messenger RNA

>Gcaud1717.t2 ID=Gcaud1717.t2|Name=Gcaud1717.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1131bp|location=Sequence derived from alignment at NODE_849_length_17037_cov_4.361560:3299..4429+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGTGAAATTTCGCGATCGTGTGAAGATCATGAGAAATACATCGGA
GGGTAGGCGCAGATTTGTTGACTTGCAGAAGTCTACGTTGTACGACTGGT
GTATGTCGTTGAAAGTAACGGAGGACTTCATCACAGTGCCACTACGAATA
GATCGTGCCAAATATGATTCAAAGATGATGGAAATTGCGCGCCGGGGCCT
AGGTGACGACTTTACGACTGCCCGCTCCGTTCGTGCTGATATTGTACCTG
CAATTCTCTCTAGTAAACCATGGGTAAAGGATGGTGTAATGAGCAAGATC
CAGGGTCGACATCCAGTCAAGTTGTTGTGTGGAGGTGATGTGATCAAAAC
AGAACCGATCTCAAAGACGCTGTTCATTTATCAGGTGTCGAGTACATGGA
CGAAAAACGAGTATCCGAGATCACGTCAACCGCTGCAAATGTGGGTGGAC
GGGTATCGCACGCGAGCGCTGGCACTGTTAGTGTTTGAGTTAGCGATATG
TGGTATTACCACCAAACAAGGGTACGAAGAGCTGATTGATGAATTCGAGC
AAGGCATTGACTTGCGCGGACTTTATCGCGAAGGTCGACTACAGCGCATT
CTGAATAACGTCCCGATTGATCGAAAATGGTCCGATGTGCGCGCCACCGT
AAACAGCTTTAATTTGTCGATTGCCATGGAGGCATCTGTGACACGGGAGC
TTATTGATCTGTGCATGCGCAGTGGGCATTCTCAGGTTTTTACGGCGGAC
GAGTACAGCGTGCGAGGTGGATACTTGAAGCTGTATGGGGTGGCACCAGG
GGAAGGTATAATGAAATTTGACAGTATGGTGAACCTGGCGGGTTTGCGTT
ACAACGATGATGAAAAAACGCCGTTTTTCATCGGGCCATCGGGCAAGTGG
TACGTGTCGTTTTATGATGTCGGGGGAGCTTCTCATGCACATTTGCATGG
TAAGATTGAGTGGAGATATCCGTACTCGCATATGACTGCCGTTACATCGA
GCATGTGGATGGCAACTAACAAAGAAATAACTTTAAGTTATCCAGTTGAA
GAGAACGCTGCGTTCTCGAAACCTTGCATTCACTTCGCCGTTGAAAAGGC
GCGCAGTCGACGTGGCCTCGCCTTACAGTAA

protein sequence of Gcaud1717.t2

>Gcaud1717.t2 ID=Gcaud1717.t2|Name=Gcaud1717.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=377bp
MDVKFRDRVKIMRNTSEGRRRFVDLQKSTLYDWCMSLKVTEDFITVPLRI
DRAKYDSKMMEIARRGLGDDFTTARSVRADIVPAILSSKPWVKDGVMSKI
QGRHPVKLLCGGDVIKTEPISKTLFIYQVSSTWTKNEYPRSRQPLQMWVD
GYRTRALALLVFELAICGITTKQGYEELIDEFEQGIDLRGLYREGRLQRI
LNNVPIDRKWSDVRATVNSFNLSIAMEASVTRELIDLCMRSGHSQVFTAD
EYSVRGGYLKLYGVAPGEGIMKFDSMVNLAGLRYNDDEKTPFFIGPSGKW
YVSFYDVGGASHAHLHGKIEWRYPYSHMTAVTSSMWMATNKEITLSYPVE
ENAAFSKPCIHFAVEKARSRRGLALQ*

mRNA from alignment at NODE_849_length_17037_cov_4.361560:3299..4429+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1717.t2 ID=Gcaud1717.t2|Name=Gcaud1717.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1131bp|location=Sequence derived from alignment at NODE_849_length_17037_cov_4.361560:3299..4429+ (Gracilaria caudata M_176_S67 male)
ATGGATGTGAAATTTCGCGATCGTGTGAAGATCATGAGAAATACATCGGA
GGGTAGGCGCAGATTTGTTGACTTGCAGAAGTCTACGTTGTACGACTGGT
GTATGTCGTTGAAAGTAACGGAGGACTTCATCACAGTGCCACTACGAATA
GATCGTGCCAAATATGATTCAAAGATGATGGAAATTGCGCGCCGGGGCCT
AGGTGACGACTTTACGACTGCCCGCTCCGTTCGTGCTGATATTGTACCTG
CAATTCTCTCTAGTAAACCATGGGTAAAGGATGGTGTAATGAGCAAGATC
CAGGGTCGACATCCAGTCAAGTTGTTGTGTGGAGGTGATGTGATCAAAAC
AGAACCGATCTCAAAGACGCTGTTCATTTATCAGGTGTCGAGTACATGGA
CGAAAAACGAGTATCCGAGATCACGTCAACCGCTGCAAATGTGGGTGGAC
GGGTATCGCACGCGAGCGCTGGCACTGTTAGTGTTTGAGTTAGCGATATG
TGGTATTACCACCAAACAAGGGTACGAAGAGCTGATTGATGAATTCGAGC
AAGGCATTGACTTGCGCGGACTTTATCGCGAAGGTCGACTACAGCGCATT
CTGAATAACGTCCCGATTGATCGAAAATGGTCCGATGTGCGCGCCACCGT
AAACAGCTTTAATTTGTCGATTGCCATGGAGGCATCTGTGACACGGGAGC
TTATTGATCTGTGCATGCGCAGTGGGCATTCTCAGGTTTTTACGGCGGAC
GAGTACAGCGTGCGAGGTGGATACTTGAAGCTGTATGGGGTGGCACCAGG
GGAAGGTATAATGAAATTTGACAGTATGGTGAACCTGGCGGGTTTGCGTT
ACAACGATGATGAAAAAACGCCGTTTTTCATCGGGCCATCGGGCAAGTGG
TACGTGTCGTTTTATGATGTCGGGGGAGCTTCTCATGCACATTTGCATGG
TAAGATTGAGTGGAGATATCCGTACTCGCATATGACTGCCGTTACATCGA
GCATGTGGATGGCAACTAACAAAGAAATAACTTTAAGTTATCCAGTTGAA
GAGAACGCTGCGTTCTCGAAACCTTGCATTCACTTCGCCGTTGAAAAGGC
GCGCAGTCGACGTGGCCTCGCCTTACAGTAA

Coding sequence (CDS) from alignment at NODE_849_length_17037_cov_4.361560:3299..4429+

>Gcaud1717.t2 ID=Gcaud1717.t2|Name=Gcaud1717.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1131bp|location=Sequence derived from alignment at NODE_849_length_17037_cov_4.361560:3299..4429+ (Gracilaria caudata M_176_S67 male)
ATGGATGTGAAATTTCGCGATCGTGTGAAGATCATGAGAAATACATCGGA
GGGTAGGCGCAGATTTGTTGACTTGCAGAAGTCTACGTTGTACGACTGGT
GTATGTCGTTGAAAGTAACGGAGGACTTCATCACAGTGCCACTACGAATA
GATCGTGCCAAATATGATTCAAAGATGATGGAAATTGCGCGCCGGGGCCT
AGGTGACGACTTTACGACTGCCCGCTCCGTTCGTGCTGATATTGTACCTG
CAATTCTCTCTAGTAAACCATGGGTAAAGGATGGTGTAATGAGCAAGATC
CAGGGTCGACATCCAGTCAAGTTGTTGTGTGGAGGTGATGTGATCAAAAC
AGAACCGATCTCAAAGACGCTGTTCATTTATCAGGTGTCGAGTACATGGA
CGAAAAACGAGTATCCGAGATCACGTCAACCGCTGCAAATGTGGGTGGAC
GGGTATCGCACGCGAGCGCTGGCACTGTTAGTGTTTGAGTTAGCGATATG
TGGTATTACCACCAAACAAGGGTACGAAGAGCTGATTGATGAATTCGAGC
AAGGCATTGACTTGCGCGGACTTTATCGCGAAGGTCGACTACAGCGCATT
CTGAATAACGTCCCGATTGATCGAAAATGGTCCGATGTGCGCGCCACCGT
AAACAGCTTTAATTTGTCGATTGCCATGGAGGCATCTGTGACACGGGAGC
TTATTGATCTGTGCATGCGCAGTGGGCATTCTCAGGTTTTTACGGCGGAC
GAGTACAGCGTGCGAGGTGGATACTTGAAGCTGTATGGGGTGGCACCAGG
GGAAGGTATAATGAAATTTGACAGTATGGTGAACCTGGCGGGTTTGCGTT
ACAACGATGATGAAAAAACGCCGTTTTTCATCGGGCCATCGGGCAAGTGG
TACGTGTCGTTTTATGATGTCGGGGGAGCTTCTCATGCACATTTGCATGG
TAAGATTGAGTGGAGATATCCGTACTCGCATATGACTGCCGTTACATCGA
GCATGTGGATGGCAACTAACAAAGAAATAACTTTAAGTTATCCAGTTGAA
GAGAACGCTGCGTTCTCGAAACCTTGCATTCACTTCGCCGTTGAAAAGGC
GCGCAGTCGACGTGGCCTCGCCTTACAGTAA