Gcaud1715.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1715.t1
Unique Name	Gcaud1715.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	540

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_850_length_17024_cov_4.708026	contig	NODE_850_length_17024_cov_4.708026:13981..15600 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ22090
PFAMs	Ground-like,Hint,Kelch_4
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K06224,ko:K11990,ko:K16669
KEGG Pathway	ko04340,ko04341,ko04391,ko04392,map04340,map04341,map04391,map04392
KEGG Module	M00678
GOs	GO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0005102,GO:0005488,GO:0005496,GO:0005515,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0007154,GO:0007267,GO:0007275,GO:0007350,GO:0007365,GO:0007367,GO:0007389,GO:0008150,GO:0008152,GO:0008233,GO:0008289,GO:0009790,GO:0009880,GO:0009987,GO:0010467,GO:0015485,GO:0016020,GO:0016485,GO:0016540,GO:0016787,GO:0019538,GO:0023052,GO:0032501,GO:0032502,GO:0032934,GO:0035282,GO:0036094,GO:0043170,GO:0043178,GO:0044238,GO:0044464,GO:0048856,GO:0051604,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0140096,GO:1901564
Evalue	4.31e-14
EggNOG OGs	KOG3638@1\|root,KOG3638@2759\|Eukaryota
Description	intein-mediated protein splicing
COG category	M
BRITE	ko00000,ko00001,ko00002,ko00536,ko01002,ko04516

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1715	Gcaud1715	Gracilaria caudata M_176_S67 male	gene	NODE_850_length_17024_cov_4.708026 13981..15600 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1715.t1.start1	Gcaud1715.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_850_length_17024_cov_4.708026 13981..13983 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1715.t1.CDS1	Gcaud1715.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_850_length_17024_cov_4.708026 13981..15600 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1715.t1.exon1	Gcaud1715.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_850_length_17024_cov_4.708026 13981..15600 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1715.t1.stop1	Gcaud1715.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_850_length_17024_cov_4.708026 15598..15600 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1715.t1	Gcaud1715.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_850_length_17024_cov_4.708026 13981..15600 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_850_length_17024_cov_4.708026:13981..15600+
coding sequence from alignment at NODE_850_length_17024_cov_4.708026:13981..15600+

mRNA sequence

>Gcaud1715.t1 ID=Gcaud1715.t1|Name=Gcaud1715.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=540bp
MTLHALFLAASCCIAAFSASLRTSEGATVLSRASVRSDVLGVYELHPSSK
EVARPFNCPHKITTNTFEFQVTNSPSSLEAPPAFNILIPHVNSLLSDQQC
ESSGSVIATTHDHPFVQVESNPLDVITYWAGGGTKQQASWVTNELIDVVS
RQPFVVGYDFTERSCRGVRLRPGTAFLWFQPAWDIPLGTLQLTGRQKYLL
LTFRFQRRAGCIYVAEVVGGEGDFALGPVSDPSVDAALDNPGMVTVPPTV
TVPPSSDSDSEELPESDEEDENEEDDDAEDQADSPSSEESDQTEASSTFT
EAQESSQSSPSDDSEQSDSSSGTIFGSASEQDDGAGNGSGNPLQGESESE
GPACFSGSSMVQLEHGPNVQMRNLKIGHRVQVRHTDFSDVFFFSHRMEHE
DMLHNFVRIRTEHTHVLTLSEGHYVYVNGHMSAAGVVSVGDRLQTGDGSW
TTVASIERVKERGLYAPHTIDGDIVVDGIRVSTYTTAVHPRLAHHVLLAP
VRLLYRLGVRDVWDRVIDGGARDLHRFLPRGPPQFGRAF*

spliced messenger RNA

>Gcaud1715.t1 ID=Gcaud1715.t1|Name=Gcaud1715.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1620bp|location=Sequence derived from alignment at NODE_850_length_17024_cov_4.708026:13981..15600+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCTACACGCGCTTTTTTTGGCGGCATCGTGCTGCATCGCGGCCTT
CAGCGCTTCGTTGCGAACTTCCGAGGGGGCGACTGTGCTGTCCAGGGCGT
CCGTGCGGTCGGATGTTTTGGGCGTTTATGAGCTGCATCCTTCTTCGAAG
GAAGTGGCTAGACCGTTCAACTGTCCGCACAAGATCACCACCAACACCTT
TGAGTTTCAGGTCACCAATTCTCCCTCATCTTTGGAGGCCCCTCCCGCCT
TCAACATTCTCATCCCGCACGTTAACTCGCTGTTAAGTGACCAACAATGT
GAATCATCGGGCAGTGTAATCGCCACCACCCATGATCATCCTTTCGTGCA
GGTGGAGTCTAATCCACTCGATGTCATCACGTACTGGGCAGGTGGTGGAA
CCAAGCAGCAAGCCTCATGGGTCACAAACGAGCTCATCGACGTTGTCTCC
AGACAGCCTTTTGTTGTCGGCTATGATTTCACCGAACGAAGCTGCAGGGG
TGTTCGTTTAAGACCAGGCACCGCCTTCTTATGGTTTCAACCCGCGTGGG
ATATTCCGCTGGGAACCCTACAACTTACGGGTAGGCAAAAGTACTTGTTA
CTCACCTTTAGGTTTCAAAGACGAGCAGGATGTATATACGTTGCTGAAGT
TGTGGGCGGTGAGGGCGATTTTGCTCTCGGGCCTGTTTCGGATCCTAGTG
TTGATGCTGCACTTGACAATCCCGGCATGGTAACCGTCCCTCCTACCGTA
ACCGTACCTCCATCTTCTGACAGCGACTCAGAGGAACTTCCTGAGAGcga
tgaagaagacgaaaacgaggaggatgacgacgccgaggacCAAGCTGATT
CACCATCGTCCGAAGAGTCAGATCAAACGGAGGCATCTTCGACGTTCACA
GAAGCTCAAGAATCGTCTCAATCGTCTCCATCTGATGATTCGGAGCAATC
TGATTCTTCTAGTGGCACTATTTTCGGAAGTGCTAGCGAGCAGGACGACG
GTGCGGGAAATGGCTCTGGTAATCCTTTGCAGGGAGAGTCTGAAAGTGAA
GGACCTGCATGTTTCTCAGGTTCGTCCATGGTGCAACTTGAACACGGGCC
GAACGTGCAAATGCGAAATTTGAAGATTGGGCATCGTGTACAAGTACGAC
ATACGGACTTTTCAGACGTGTTTTTCTTCTCCCACCGTATGGAGCATGAA
GACATGTTGCACAATTTTGTCAGAATCCGAACGGAACATACACATGTTCT
GACTTTATCCGAAGGCCATTACGTTTACGTAAACGGTCACATGTCTGCTG
CAGGGGTTGTTTCGGTGGGAGATAGACTTCAAACTGGCGATGGAAGCTGG
ACAACCGTTGCGAGTATTGAGCGAGTGAAAGAACGTGGATTGTACGCTCC
GCATACAATCGATGGAGATATTGTTGTGGATGGAATTCGTGTTTCAACGT
ATACAACCGCTGTGCATCCTCGATTGGCACATCATGTGCTGCTTGCGCCT
GTGAGACTTCTTTATCGATTGGGCGTTCGTGACGTATGGGACCGAGTGAT
TGACGGAGGGGCCCGCGATCTGCATCGATTTCTACCGCGCGGACCGCCGC
AGTTTGGTAGAGCTTTTTAG

protein sequence of Gcaud1715.t1

>Gcaud1715.t1 ID=Gcaud1715.t1|Name=Gcaud1715.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=540bp
MTLHALFLAASCCIAAFSASLRTSEGATVLSRASVRSDVLGVYELHPSSK
EVARPFNCPHKITTNTFEFQVTNSPSSLEAPPAFNILIPHVNSLLSDQQC
ESSGSVIATTHDHPFVQVESNPLDVITYWAGGGTKQQASWVTNELIDVVS
RQPFVVGYDFTERSCRGVRLRPGTAFLWFQPAWDIPLGTLQLTGRQKYLL
LTFRFQRRAGCIYVAEVVGGEGDFALGPVSDPSVDAALDNPGMVTVPPTV
TVPPSSDSDSEELPESDEEDENEEDDDAEDQADSPSSEESDQTEASSTFT
EAQESSQSSPSDDSEQSDSSSGTIFGSASEQDDGAGNGSGNPLQGESESE
GPACFSGSSMVQLEHGPNVQMRNLKIGHRVQVRHTDFSDVFFFSHRMEHE
DMLHNFVRIRTEHTHVLTLSEGHYVYVNGHMSAAGVVSVGDRLQTGDGSW
TTVASIERVKERGLYAPHTIDGDIVVDGIRVSTYTTAVHPRLAHHVLLAP
VRLLYRLGVRDVWDRVIDGGARDLHRFLPRGPPQFGRAF*

mRNA from alignment at NODE_850_length_17024_cov_4.708026:13981..15600+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1715.t1 ID=Gcaud1715.t1|Name=Gcaud1715.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1620bp|location=Sequence derived from alignment at NODE_850_length_17024_cov_4.708026:13981..15600+ (Gracilaria caudata M_176_S67 male)
ATGACTCTACACGCGCTTTTTTTGGCGGCATCGTGCTGCATCGCGGCCTT
CAGCGCTTCGTTGCGAACTTCCGAGGGGGCGACTGTGCTGTCCAGGGCGT
CCGTGCGGTCGGATGTTTTGGGCGTTTATGAGCTGCATCCTTCTTCGAAG
GAAGTGGCTAGACCGTTCAACTGTCCGCACAAGATCACCACCAACACCTT
TGAGTTTCAGGTCACCAATTCTCCCTCATCTTTGGAGGCCCCTCCCGCCT
TCAACATTCTCATCCCGCACGTTAACTCGCTGTTAAGTGACCAACAATGT
GAATCATCGGGCAGTGTAATCGCCACCACCCATGATCATCCTTTCGTGCA
GGTGGAGTCTAATCCACTCGATGTCATCACGTACTGGGCAGGTGGTGGAA
CCAAGCAGCAAGCCTCATGGGTCACAAACGAGCTCATCGACGTTGTCTCC
AGACAGCCTTTTGTTGTCGGCTATGATTTCACCGAACGAAGCTGCAGGGG
TGTTCGTTTAAGACCAGGCACCGCCTTCTTATGGTTTCAACCCGCGTGGG
ATATTCCGCTGGGAACCCTACAACTTACGGGTAGGCAAAAGTACTTGTTA
CTCACCTTTAGGTTTCAAAGACGAGCAGGATGTATATACGTTGCTGAAGT
TGTGGGCGGTGAGGGCGATTTTGCTCTCGGGCCTGTTTCGGATCCTAGTG
TTGATGCTGCACTTGACAATCCCGGCATGGTAACCGTCCCTCCTACCGTA
ACCGTACCTCCATCTTCTGACAGCGACTCAGAGGAACTTCCTGAGAGcga
tgaagaagacgaaaacgaggaggatgacgacgccgaggacCAAGCTGATT
CACCATCGTCCGAAGAGTCAGATCAAACGGAGGCATCTTCGACGTTCACA
GAAGCTCAAGAATCGTCTCAATCGTCTCCATCTGATGATTCGGAGCAATC
TGATTCTTCTAGTGGCACTATTTTCGGAAGTGCTAGCGAGCAGGACGACG
GTGCGGGAAATGGCTCTGGTAATCCTTTGCAGGGAGAGTCTGAAAGTGAA
GGACCTGCATGTTTCTCAGGTTCGTCCATGGTGCAACTTGAACACGGGCC
GAACGTGCAAATGCGAAATTTGAAGATTGGGCATCGTGTACAAGTACGAC
ATACGGACTTTTCAGACGTGTTTTTCTTCTCCCACCGTATGGAGCATGAA
GACATGTTGCACAATTTTGTCAGAATCCGAACGGAACATACACATGTTCT
GACTTTATCCGAAGGCCATTACGTTTACGTAAACGGTCACATGTCTGCTG
CAGGGGTTGTTTCGGTGGGAGATAGACTTCAAACTGGCGATGGAAGCTGG
ACAACCGTTGCGAGTATTGAGCGAGTGAAAGAACGTGGATTGTACGCTCC
GCATACAATCGATGGAGATATTGTTGTGGATGGAATTCGTGTTTCAACGT
ATACAACCGCTGTGCATCCTCGATTGGCACATCATGTGCTGCTTGCGCCT
GTGAGACTTCTTTATCGATTGGGCGTTCGTGACGTATGGGACCGAGTGAT
TGACGGAGGGGCCCGCGATCTGCATCGATTTCTACCGCGCGGACCGCCGC
AGTTTGGTAGAGCTTTTTAG

Coding sequence (CDS) from alignment at NODE_850_length_17024_cov_4.708026:13981..15600+

>Gcaud1715.t1 ID=Gcaud1715.t1|Name=Gcaud1715.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1620bp|location=Sequence derived from alignment at NODE_850_length_17024_cov_4.708026:13981..15600+ (Gracilaria caudata M_176_S67 male)
ATGACTCTACACGCGCTTTTTTTGGCGGCATCGTGCTGCATCGCGGCCTT
CAGCGCTTCGTTGCGAACTTCCGAGGGGGCGACTGTGCTGTCCAGGGCGT
CCGTGCGGTCGGATGTTTTGGGCGTTTATGAGCTGCATCCTTCTTCGAAG
GAAGTGGCTAGACCGTTCAACTGTCCGCACAAGATCACCACCAACACCTT
TGAGTTTCAGGTCACCAATTCTCCCTCATCTTTGGAGGCCCCTCCCGCCT
TCAACATTCTCATCCCGCACGTTAACTCGCTGTTAAGTGACCAACAATGT
GAATCATCGGGCAGTGTAATCGCCACCACCCATGATCATCCTTTCGTGCA
GGTGGAGTCTAATCCACTCGATGTCATCACGTACTGGGCAGGTGGTGGAA
CCAAGCAGCAAGCCTCATGGGTCACAAACGAGCTCATCGACGTTGTCTCC
AGACAGCCTTTTGTTGTCGGCTATGATTTCACCGAACGAAGCTGCAGGGG
TGTTCGTTTAAGACCAGGCACCGCCTTCTTATGGTTTCAACCCGCGTGGG
ATATTCCGCTGGGAACCCTACAACTTACGGGTAGGCAAAAGTACTTGTTA
CTCACCTTTAGGTTTCAAAGACGAGCAGGATGTATATACGTTGCTGAAGT
TGTGGGCGGTGAGGGCGATTTTGCTCTCGGGCCTGTTTCGGATCCTAGTG
TTGATGCTGCACTTGACAATCCCGGCATGGTAACCGTCCCTCCTACCGTA
ACCGTACCTCCATCTTCTGACAGCGACTCAGAGGAACTTCCTGAGAGcga
tgaagaagacgaaaacgaggaggatgacgacgccgaggacCAAGCTGATT
CACCATCGTCCGAAGAGTCAGATCAAACGGAGGCATCTTCGACGTTCACA
GAAGCTCAAGAATCGTCTCAATCGTCTCCATCTGATGATTCGGAGCAATC
TGATTCTTCTAGTGGCACTATTTTCGGAAGTGCTAGCGAGCAGGACGACG
GTGCGGGAAATGGCTCTGGTAATCCTTTGCAGGGAGAGTCTGAAAGTGAA
GGACCTGCATGTTTCTCAGGTTCGTCCATGGTGCAACTTGAACACGGGCC
GAACGTGCAAATGCGAAATTTGAAGATTGGGCATCGTGTACAAGTACGAC
ATACGGACTTTTCAGACGTGTTTTTCTTCTCCCACCGTATGGAGCATGAA
GACATGTTGCACAATTTTGTCAGAATCCGAACGGAACATACACATGTTCT
GACTTTATCCGAAGGCCATTACGTTTACGTAAACGGTCACATGTCTGCTG
CAGGGGTTGTTTCGGTGGGAGATAGACTTCAAACTGGCGATGGAAGCTGG
ACAACCGTTGCGAGTATTGAGCGAGTGAAAGAACGTGGATTGTACGCTCC
GCATACAATCGATGGAGATATTGTTGTGGATGGAATTCGTGTTTCAACGT
ATACAACCGCTGTGCATCCTCGATTGGCACATCATGTGCTGCTTGCGCCT
GTGAGACTTCTTTATCGATTGGGCGTTCGTGACGTATGGGACCGAGTGAT
TGACGGAGGGGCCCGCGATCTGCATCGATTTCTACCGCGCGGACCGCCGC
AGTTTGGTAGAGCTTTTTAG