Gcaud1710.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1710.t1
Unique Name	Gcaud1710.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	463

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_851_length_17024_cov_4.098683	contig	NODE_851_length_17024_cov_4.098683:12027..13415 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005702826.1
PFAMs	Alpha-amylase,Alpha-amylase_C,CBM_48,DUF1752,Glyco_transf_4,Glycos_transf_1
Max annot lvl	2759\|Eukaryota
Evalue	5.58e-151
EggNOG OGs	COG0438@1\|root,KOG0853@2759\|Eukaryota
Description	sucrose synthase activity
COG category	M

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1710	Gcaud1710	Gracilaria caudata M_176_S67 male	gene	NODE_851_length_17024_cov_4.098683 12027..13415 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1710.t1.stop1	Gcaud1710.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_851_length_17024_cov_4.098683 12027..12029 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1710.t1.CDS1	Gcaud1710.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_851_length_17024_cov_4.098683 12027..13415 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1710.t1.exon1	Gcaud1710.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_851_length_17024_cov_4.098683 12027..13415 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1710.t1.start1	Gcaud1710.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_851_length_17024_cov_4.098683 13413..13415 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1710.t1	Gcaud1710.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_851_length_17024_cov_4.098683 12027..13415 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_851_length_17024_cov_4.098683:12027..13415-
coding sequence from alignment at NODE_851_length_17024_cov_4.098683:12027..13415-

mRNA sequence

>Gcaud1710.t1 ID=Gcaud1710.t1|Name=Gcaud1710.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=463bp
MKRVGSIKEIIDIALELPAGAVPYEEFDFEPYFEEAQNEEELRKTWRVFT
KVKDVLDNGRRLENASWRLWHRERAKTGLAPPDITALSTASDAEKYHLDT
SLKQAELETDRIVGDMFGGVGQRFQEENAKVVQRARAERTRALLEMAEKH
QLADQVVDDILGWVSSSVITAEEVVVHQSADLLPDSISDARDYIHRTVFM
PRPRVAAFCHSLERNGANNFLLYLVRELREQLSFEVYSPKEGAMRADYEA
MGVSVSICNMKLVSYPQDVRAVLKNYQYAVANTIMTTEVINAARDLNVPC
LWVIHEAWPKDQFNYYAKEVFMMTHLDEQAIVDAFSNASKIVFPANVQRS
CYDGLFKPENARVIYNGIPLASINAFRAVQSRDKVRKELGYGPNDLLLVH
MGTVCKRKAQLITCQAFAELHMNGPLPDGRNFKLLMVGASYIRQHEIDYT
EECKANLGSSWC*

spliced messenger RNA

>Gcaud1710.t1 ID=Gcaud1710.t1|Name=Gcaud1710.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1389bp|location=Sequence derived from alignment at NODE_851_length_17024_cov_4.098683:12027..13415- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCGTGTCGGCTCCATCAAGGAGATCATTGACATTGCGCTCGAGCT
CCCGGCCGGCGCCGTGCCGTACGAGGAGTTCGACTTCGAGCCGTACTTCG
AGGAGGCACAGAACGAGGAGGAGCTGCGCAAGACCTGGCGAGTGTTCACC
AAGGTCAAGGACGTGCTGGACAATGGCCGCCGTCTGGAGAACGCCAGTTG
GCGCCTCTGGCATCGCGAGCGTGCCAAGACCGGCCTCGCTCCGCCGGACA
TTACGGCGCTTTCCACCGCCTCCGACGCTGAAAAGTACCACCTGGACACC
AGTCTCAAGCAGGCCGAACTGGAGACTGACCGCATAGTGGGTGATATGTT
CGGTGGCGTAGGTCAGCGCTTTCAGGAGGAGAATGCCAAGGTGGTGCAAC
GAGCCAGGGCCGAACGCACGCGCGCTCTGCTCGAAATGGCCGAGAAGCAC
CAGCTTGCCGACCAAGTTGTCGACGATATTCTGGGCTGGGTCTCTTCTTC
CGTCATCACAGCGGAGGAGGTCGTTGTGCATCAGTCAGCAGACCTGCTGC
CGGACAGTATTAGCGATGCTCGCGATTACATTCATCGCACTGTGTTCATG
CCCAGACCGAGGGTTGCAGCGTTTTGTCACTCGCTGGAGCGCAATGGAGC
CAACAATTTCCTTCTCTATTTGGTGCGAGAGTTGCGTGAGCAGTTATCAT
TTGAGGTGTACTCACCAAAGGAAGGTGCCATGAGAGCTGATTATGAGGCA
ATGGGCGTCTCGGTCAGCATTTGCAATATGAAGCTTGTCTCATACCCCCA
AGATGTCCGAGCTGTGCTCAAGAACTACCAATATGCTGTTGCGAATACCA
TCATGACCACAGAGGTCATCAACGCTGCTCGTGACTTGAACGTGCCTTGC
TTGTGGGTTATTCACGAAGCGTGGCCCAAGGACCAGTTCAATTATTATGC
AAAGGAGGTGTTCATGATGACCCATCTGGATGAACAGGCCATTGTGGACG
CCTTCTCAAATGCATCCAAGATCGTTTTCCCGGCCAATGTGCAACGAAGC
TGCTACGATGGCCTTTTCAAGCCAGAAAACGCTCGTGTCATCTACAATGG
CATCCCGCTTGCGAGTATTAATGCATTTAGGGCGGTTCAGAGCCGTGACA
AGGTCCGAAAGGAATTGGGCTATGGTCCTAATGATTTACTTCTGGTTCAC
ATGGGTACCGTTTGTAAGAGAAAGGCGCAGCTTATTACTTGTCAGGCGTT
TGCCGAACTTCATATGAATGGGCCTTTGCCTGATGGTAGGAACTTTAAGC
TTCTCATGGTGGGAGCAAGCTATATTCGCCAACATGAGATTGATTACACC
GAAGAATGCAAAGCAAACCTTGGAAGCAGCTGGTGCTGA

protein sequence of Gcaud1710.t1

>Gcaud1710.t1 ID=Gcaud1710.t1|Name=Gcaud1710.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=463bp
MKRVGSIKEIIDIALELPAGAVPYEEFDFEPYFEEAQNEEELRKTWRVFT
KVKDVLDNGRRLENASWRLWHRERAKTGLAPPDITALSTASDAEKYHLDT
SLKQAELETDRIVGDMFGGVGQRFQEENAKVVQRARAERTRALLEMAEKH
QLADQVVDDILGWVSSSVITAEEVVVHQSADLLPDSISDARDYIHRTVFM
PRPRVAAFCHSLERNGANNFLLYLVRELREQLSFEVYSPKEGAMRADYEA
MGVSVSICNMKLVSYPQDVRAVLKNYQYAVANTIMTTEVINAARDLNVPC
LWVIHEAWPKDQFNYYAKEVFMMTHLDEQAIVDAFSNASKIVFPANVQRS
CYDGLFKPENARVIYNGIPLASINAFRAVQSRDKVRKELGYGPNDLLLVH
MGTVCKRKAQLITCQAFAELHMNGPLPDGRNFKLLMVGASYIRQHEIDYT
EECKANLGSSWC*

mRNA from alignment at NODE_851_length_17024_cov_4.098683:12027..13415-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1710.t1 ID=Gcaud1710.t1|Name=Gcaud1710.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1389bp|location=Sequence derived from alignment at NODE_851_length_17024_cov_4.098683:12027..13415- (Gracilaria caudata M_176_S67 male)
ATGAAGCGTGTCGGCTCCATCAAGGAGATCATTGACATTGCGCTCGAGCT
CCCGGCCGGCGCCGTGCCGTACGAGGAGTTCGACTTCGAGCCGTACTTCG
AGGAGGCACAGAACGAGGAGGAGCTGCGCAAGACCTGGCGAGTGTTCACC
AAGGTCAAGGACGTGCTGGACAATGGCCGCCGTCTGGAGAACGCCAGTTG
GCGCCTCTGGCATCGCGAGCGTGCCAAGACCGGCCTCGCTCCGCCGGACA
TTACGGCGCTTTCCACCGCCTCCGACGCTGAAAAGTACCACCTGGACACC
AGTCTCAAGCAGGCCGAACTGGAGACTGACCGCATAGTGGGTGATATGTT
CGGTGGCGTAGGTCAGCGCTTTCAGGAGGAGAATGCCAAGGTGGTGCAAC
GAGCCAGGGCCGAACGCACGCGCGCTCTGCTCGAAATGGCCGAGAAGCAC
CAGCTTGCCGACCAAGTTGTCGACGATATTCTGGGCTGGGTCTCTTCTTC
CGTCATCACAGCGGAGGAGGTCGTTGTGCATCAGTCAGCAGACCTGCTGC
CGGACAGTATTAGCGATGCTCGCGATTACATTCATCGCACTGTGTTCATG
CCCAGACCGAGGGTTGCAGCGTTTTGTCACTCGCTGGAGCGCAATGGAGC
CAACAATTTCCTTCTCTATTTGGTGCGAGAGTTGCGTGAGCAGTTATCAT
TTGAGGTGTACTCACCAAAGGAAGGTGCCATGAGAGCTGATTATGAGGCA
ATGGGCGTCTCGGTCAGCATTTGCAATATGAAGCTTGTCTCATACCCCCA
AGATGTCCGAGCTGTGCTCAAGAACTACCAATATGCTGTTGCGAATACCA
TCATGACCACAGAGGTCATCAACGCTGCTCGTGACTTGAACGTGCCTTGC
TTGTGGGTTATTCACGAAGCGTGGCCCAAGGACCAGTTCAATTATTATGC
AAAGGAGGTGTTCATGATGACCCATCTGGATGAACAGGCCATTGTGGACG
CCTTCTCAAATGCATCCAAGATCGTTTTCCCGGCCAATGTGCAACGAAGC
TGCTACGATGGCCTTTTCAAGCCAGAAAACGCTCGTGTCATCTACAATGG
CATCCCGCTTGCGAGTATTAATGCATTTAGGGCGGTTCAGAGCCGTGACA
AGGTCCGAAAGGAATTGGGCTATGGTCCTAATGATTTACTTCTGGTTCAC
ATGGGTACCGTTTGTAAGAGAAAGGCGCAGCTTATTACTTGTCAGGCGTT
TGCCGAACTTCATATGAATGGGCCTTTGCCTGATGGTAGGAACTTTAAGC
TTCTCATGGTGGGAGCAAGCTATATTCGCCAACATGAGATTGATTACACC
GAAGAATGCAAAGCAAACCTTGGAAGCAGCTGGTGCTGA

Coding sequence (CDS) from alignment at NODE_851_length_17024_cov_4.098683:12027..13415-

>Gcaud1710.t1 ID=Gcaud1710.t1|Name=Gcaud1710.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1389bp|location=Sequence derived from alignment at NODE_851_length_17024_cov_4.098683:12027..13415- (Gracilaria caudata M_176_S67 male)
ATGAAGCGTGTCGGCTCCATCAAGGAGATCATTGACATTGCGCTCGAGCT
CCCGGCCGGCGCCGTGCCGTACGAGGAGTTCGACTTCGAGCCGTACTTCG
AGGAGGCACAGAACGAGGAGGAGCTGCGCAAGACCTGGCGAGTGTTCACC
AAGGTCAAGGACGTGCTGGACAATGGCCGCCGTCTGGAGAACGCCAGTTG
GCGCCTCTGGCATCGCGAGCGTGCCAAGACCGGCCTCGCTCCGCCGGACA
TTACGGCGCTTTCCACCGCCTCCGACGCTGAAAAGTACCACCTGGACACC
AGTCTCAAGCAGGCCGAACTGGAGACTGACCGCATAGTGGGTGATATGTT
CGGTGGCGTAGGTCAGCGCTTTCAGGAGGAGAATGCCAAGGTGGTGCAAC
GAGCCAGGGCCGAACGCACGCGCGCTCTGCTCGAAATGGCCGAGAAGCAC
CAGCTTGCCGACCAAGTTGTCGACGATATTCTGGGCTGGGTCTCTTCTTC
CGTCATCACAGCGGAGGAGGTCGTTGTGCATCAGTCAGCAGACCTGCTGC
CGGACAGTATTAGCGATGCTCGCGATTACATTCATCGCACTGTGTTCATG
CCCAGACCGAGGGTTGCAGCGTTTTGTCACTCGCTGGAGCGCAATGGAGC
CAACAATTTCCTTCTCTATTTGGTGCGAGAGTTGCGTGAGCAGTTATCAT
TTGAGGTGTACTCACCAAAGGAAGGTGCCATGAGAGCTGATTATGAGGCA
ATGGGCGTCTCGGTCAGCATTTGCAATATGAAGCTTGTCTCATACCCCCA
AGATGTCCGAGCTGTGCTCAAGAACTACCAATATGCTGTTGCGAATACCA
TCATGACCACAGAGGTCATCAACGCTGCTCGTGACTTGAACGTGCCTTGC
TTGTGGGTTATTCACGAAGCGTGGCCCAAGGACCAGTTCAATTATTATGC
AAAGGAGGTGTTCATGATGACCCATCTGGATGAACAGGCCATTGTGGACG
CCTTCTCAAATGCATCCAAGATCGTTTTCCCGGCCAATGTGCAACGAAGC
TGCTACGATGGCCTTTTCAAGCCAGAAAACGCTCGTGTCATCTACAATGG
CATCCCGCTTGCGAGTATTAATGCATTTAGGGCGGTTCAGAGCCGTGACA
AGGTCCGAAAGGAATTGGGCTATGGTCCTAATGATTTACTTCTGGTTCAC
ATGGGTACCGTTTGTAAGAGAAAGGCGCAGCTTATTACTTGTCAGGCGTT
TGCCGAACTTCATATGAATGGGCCTTTGCCTGATGGTAGGAACTTTAAGC
TTCTCATGGTGGGAGCAAGCTATATTCGCCAACATGAGATTGATTACACC
GAAGAATGCAAAGCAAACCTTGGAAGCAGCTGGTGCTGA