Gcaud1700.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1700.t1
Unique NameGcaud1700.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length276
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_852_length_17021_cov_7.154341contigNODE_852_length_17021_cov_7.154341:9032..9859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMA066CT
Preferred nameSMC6
PFAMsAAA_23,SMC_N
Max annot lvl2759|Eukaryota
KEGG koko:K12614,ko:K15014
KEGG TC2.A.57.1
KEGG Pathwayko03018,map03018
KEGG ModuleM00395
GOsGO:0000228,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000781,GO:0000793,GO:0000794,GO:0000803,GO:0001674,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007568,GO:0007569,GO:0008094,GO:0008150,GO:0008152,GO:0009410,GO:0009987,GO:0010033,GO:0010243,GO:0014070,GO:0014074,GO:0016043,GO:0016462,GO:0016604,GO:0016605,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019899,GO:0022402,GO:0030915,GO:0031000,GO:0031625,GO:0031974,GO:0031981,GO:0032200,GO:0032502,GO:0032991,GO:0033554,GO:0033676,GO:0034641,GO:0035061,GO:0035861,GO:0036270,GO:0042221,GO:0042493,GO:0042585,GO:0042592,GO:0042623,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043279,GO:0044237,GO:0044238,GO:0044260,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048518,GO:0048522,GO:0048869,GO:0050000,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051276,GO:0051304,GO:0051640,GO:0051641,GO:0051716,GO:0051983,GO:0051984,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0071139,GO:0071704,GO:0071840,GO:0090304,GO:0090398,GO:0090734,GO:0097159,GO:0097240,GO:0098687,GO:0106068,GO:1901360,GO:1901363,GO:1901698,GO:1902494,GO:1990234,GO:1990683
Evalue8.68e-28
EggNOG OGsCOG1196@1|root,KOG0250@2759|Eukaryota
EC3.6.4.13
Descriptiondouble-strand break repair via homologous recombination
COG categoryD
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03019,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1700Gcaud1700Gracilaria caudata M_176_S67 malegeneNODE_852_length_17021_cov_7.154341 9032..9859 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1700.t1.stop1Gcaud1700.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_852_length_17021_cov_7.154341 9032..9034 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1700.t1.CDS1Gcaud1700.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_852_length_17021_cov_7.154341 9032..9859 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1700.t1.exon1Gcaud1700.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_852_length_17021_cov_7.154341 9032..9859 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1700.t1.start1Gcaud1700.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_852_length_17021_cov_7.154341 9857..9859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1700.t1Gcaud1700.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_852_length_17021_cov_7.154341 9032..9859 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1700.t1 ID=Gcaud1700.t1|Name=Gcaud1700.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=276bp
MAHREVNVQRNKVVEHTDPARSLGASPENEDWLKWSSEKAQRRVRTLQER
LRTEQKRHGGKSAHQIETEYLQAMKQYKENKERQERISHYENCLTVGIKR
RREKLTSLNKALKKLVRNHFRQFLGAKGHTGTLRFGTNSNGDHELRITTQ
LQHHEMKNGERHTIEQLSSMSGGERSYTTLAFILALAEICQMPVRVFDEI
DVFQDDATRRVAFRKMTDFCTQYLSDKQIIIITPQKLPHLESSPSIRIQL
LERPRPATGSSGRRQSTIDEFTGTS*
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spliced messenger RNA

>Gcaud1700.t1 ID=Gcaud1700.t1|Name=Gcaud1700.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=828bp|location=Sequence derived from alignment at NODE_852_length_17021_cov_7.154341:9032..9859- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCACAGAGAAGTGAACGTGCAAAGAAACAAAGTAGTTGAACACAC
TGACCCAGCGAGATCTCTTGGCGCCAGTCCAGAGAACGAGGATTGGTTGA
AGTGGTCTTCTGAGAAGGCTCAACGTAGAGTGAGAACTCTCCAAGAACGG
CTTAGAACTGAACAGAAGCGACATGGTGGAAAGAGTGCGCATCAAATTGA
AACCGAGTACCTACAGGCTATGAAGCAGTACAAGGAGAATAAGGAACGTC
AAGAAAGGATATCTCACTATGAAAACTGCCTGACAGTTGGGATCAAGAGA
AGAAGAGAGAAGCTAACAAGTTTGAACAAGGCTTTGAAGAAGTTAGTTCG
TAATCACTTTCGACAATTCTTGGGGGCCAAGGGTCATACAGGAACACTGA
GATTTGGTACGAACAGCAATGGGGATCATGAGCTTCGAATTACAACTCAG
CTACAACATCATGAGATGAAGAACGGAGAACGGCATACAATAGAACAACT
CAGTTCCATGAGCGGCGGCGAGAGAAGCTACACGACTCTGGCTTTTATTC
TTGCGCTTGCAGAAATTTGTCAAATGCCAGTTCGTGTGTTTGATGAAATT
GATGTCTTCCAGGATGATGCTACAAGGCGAGTGGCTTTCAGGAAGATGAC
AGACTTCTGCACCCAGTACTTGTCGGACAAGCAGATAATCATCATCACTC
CCCAAAAGCTGCCACATCTGGAAAGCTCACCTTCAATACGCATTCAACTA
CTTGAACGTCCAAGACCTGCAACGGGCAGTTCTGGAAGAAGACAAAGTAC
AATCGATGAGTTCACCGGGACATCATAA
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protein sequence of Gcaud1700.t1

>Gcaud1700.t1 ID=Gcaud1700.t1|Name=Gcaud1700.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=276bp
MAHREVNVQRNKVVEHTDPARSLGASPENEDWLKWSSEKAQRRVRTLQER
LRTEQKRHGGKSAHQIETEYLQAMKQYKENKERQERISHYENCLTVGIKR
RREKLTSLNKALKKLVRNHFRQFLGAKGHTGTLRFGTNSNGDHELRITTQ
LQHHEMKNGERHTIEQLSSMSGGERSYTTLAFILALAEICQMPVRVFDEI
DVFQDDATRRVAFRKMTDFCTQYLSDKQIIIITPQKLPHLESSPSIRIQL
LERPRPATGSSGRRQSTIDEFTGTS*
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mRNA from alignment at NODE_852_length_17021_cov_7.154341:9032..9859-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1700.t1 ID=Gcaud1700.t1|Name=Gcaud1700.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=828bp|location=Sequence derived from alignment at NODE_852_length_17021_cov_7.154341:9032..9859- (Gracilaria caudata M_176_S67 male)
ATGGCTCACAGAGAAGTGAACGTGCAAAGAAACAAAGTAGTTGAACACAC
TGACCCAGCGAGATCTCTTGGCGCCAGTCCAGAGAACGAGGATTGGTTGA
AGTGGTCTTCTGAGAAGGCTCAACGTAGAGTGAGAACTCTCCAAGAACGG
CTTAGAACTGAACAGAAGCGACATGGTGGAAAGAGTGCGCATCAAATTGA
AACCGAGTACCTACAGGCTATGAAGCAGTACAAGGAGAATAAGGAACGTC
AAGAAAGGATATCTCACTATGAAAACTGCCTGACAGTTGGGATCAAGAGA
AGAAGAGAGAAGCTAACAAGTTTGAACAAGGCTTTGAAGAAGTTAGTTCG
TAATCACTTTCGACAATTCTTGGGGGCCAAGGGTCATACAGGAACACTGA
GATTTGGTACGAACAGCAATGGGGATCATGAGCTTCGAATTACAACTCAG
CTACAACATCATGAGATGAAGAACGGAGAACGGCATACAATAGAACAACT
CAGTTCCATGAGCGGCGGCGAGAGAAGCTACACGACTCTGGCTTTTATTC
TTGCGCTTGCAGAAATTTGTCAAATGCCAGTTCGTGTGTTTGATGAAATT
GATGTCTTCCAGGATGATGCTACAAGGCGAGTGGCTTTCAGGAAGATGAC
AGACTTCTGCACCCAGTACTTGTCGGACAAGCAGATAATCATCATCACTC
CCCAAAAGCTGCCACATCTGGAAAGCTCACCTTCAATACGCATTCAACTA
CTTGAACGTCCAAGACCTGCAACGGGCAGTTCTGGAAGAAGACAAAGTAC
AATCGATGAGTTCACCGGGACATCATAA
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Coding sequence (CDS) from alignment at NODE_852_length_17021_cov_7.154341:9032..9859-

>Gcaud1700.t1 ID=Gcaud1700.t1|Name=Gcaud1700.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=828bp|location=Sequence derived from alignment at NODE_852_length_17021_cov_7.154341:9032..9859- (Gracilaria caudata M_176_S67 male)
ATGGCTCACAGAGAAGTGAACGTGCAAAGAAACAAAGTAGTTGAACACAC
TGACCCAGCGAGATCTCTTGGCGCCAGTCCAGAGAACGAGGATTGGTTGA
AGTGGTCTTCTGAGAAGGCTCAACGTAGAGTGAGAACTCTCCAAGAACGG
CTTAGAACTGAACAGAAGCGACATGGTGGAAAGAGTGCGCATCAAATTGA
AACCGAGTACCTACAGGCTATGAAGCAGTACAAGGAGAATAAGGAACGTC
AAGAAAGGATATCTCACTATGAAAACTGCCTGACAGTTGGGATCAAGAGA
AGAAGAGAGAAGCTAACAAGTTTGAACAAGGCTTTGAAGAAGTTAGTTCG
TAATCACTTTCGACAATTCTTGGGGGCCAAGGGTCATACAGGAACACTGA
GATTTGGTACGAACAGCAATGGGGATCATGAGCTTCGAATTACAACTCAG
CTACAACATCATGAGATGAAGAACGGAGAACGGCATACAATAGAACAACT
CAGTTCCATGAGCGGCGGCGAGAGAAGCTACACGACTCTGGCTTTTATTC
TTGCGCTTGCAGAAATTTGTCAAATGCCAGTTCGTGTGTTTGATGAAATT
GATGTCTTCCAGGATGATGCTACAAGGCGAGTGGCTTTCAGGAAGATGAC
AGACTTCTGCACCCAGTACTTGTCGGACAAGCAGATAATCATCATCACTC
CCCAAAAGCTGCCACATCTGGAAAGCTCACCTTCAATACGCATTCAACTA
CTTGAACGTCCAAGACCTGCAACGGGCAGTTCTGGAAGAAGACAAAGTAC
AATCGATGAGTTCACCGGGACATCATAA
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