Gcaud1698.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1698.t1
Unique Name	Gcaud1698.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	507

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_981_length_15546_cov_4.499191	contig	NODE_981_length_15546_cov_4.499191:7894..9414 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1698	Gcaud1698	Gracilaria caudata M_176_S67 male	gene	NODE_981_length_15546_cov_4.499191 7894..9414 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1698.t1.start1	Gcaud1698.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_981_length_15546_cov_4.499191 7894..7896 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1698.t1.CDS1	Gcaud1698.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_981_length_15546_cov_4.499191 7894..9414 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1698.t1.exon1	Gcaud1698.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_981_length_15546_cov_4.499191 7894..9414 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1698.t1.stop1	Gcaud1698.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_981_length_15546_cov_4.499191 9412..9414 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1698.t1	Gcaud1698.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_981_length_15546_cov_4.499191 7894..9414 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_981_length_15546_cov_4.499191:7894..9414+
coding sequence from alignment at NODE_981_length_15546_cov_4.499191:7894..9414+

mRNA sequence

>Gcaud1698.t1 ID=Gcaud1698.t1|Name=Gcaud1698.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=507bp
MTDPPRRDMFSFLNLNPLRLLRRDKLRPTTNPPESSPQPSSSEQIDQLNT
KLRDSQTAHNAVAADFDALKQQHAQTATEFDALREKNAVTVEQFDALQDV
HTAVLAELESLKSAHAEKLSQLESLTATNAQTVANNAALNEQLSSLSKQH
EQQSAQMSQLQDENVRLSELLSQVRAHHGALQKTLAAREGALADQTAESE
RLSAALKEKEQQCEDVKADLAKESELLAAANTKLSEANAANEALTTQLQE
QTARADALQKELTDEKEALAESDKQLTTEREAHVVTKGELEGETKKLQET
QATLTEKEGMLKTLGEEKEALNTKLTEVQSELDTSRGESETLRGEVGDRE
TKLAAKTAEGEQAMKEAGERELALNGEKDTLQKSLDELKATEGELREQLE
KVGMEKSEVEKERDEGLKERDELKEELRQARTELEDWMREIKMAEQGADG
DGDGGGAEVADGQADGGVDMNGVSGEGVEQGLAPPPAAEEGVEQGLAPPP
AAEEGA*

spliced messenger RNA

>Gcaud1698.t1 ID=Gcaud1698.t1|Name=Gcaud1698.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at NODE_981_length_15546_cov_4.499191:7894..9414+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGACCCGCCGCGTCGCGACATGTTTTCCTTTTTGAACCTCAACCC
ACTTCGTCTGTTACGTCGCGACAAGCTACGCCCCACCACCAACCCGCCCG
AGTCCTCGCCACAACCGTCTTCCTCCGAACAGATCGATCAACTCAACACC
AAGTTACGCGACTCACAGACTGCGCACAACGCCGTAGCGGCCGATTTCGA
CGCGCTCAAACAGCAACACGCGCAGACCGCCACTGAATTTGACGCGTTGC
GAGAGAAAAACGCCGTGACAGTGGAACAGTTTGACGCACTTCAGGACGTT
CACACCGCCGTGCTTGCCGAACTCGAGTCTTTGAAGAGTGCGCACGCCGA
GAAGCTCTCGCAACTTGAATCACTCACCGCTACAAACGCTCAGACTGTGG
CCAACAACGCCGCGTTGAACGAACAGTTGTCGTCGCTGTCCAAGCAACAC
GAACAACAGAGTGCACAAATGTCGCAACTACAGGACGAGAACGTGCGACT
GTCCGAGCTGTTGTCGCAGGTTCGCGCGCACCATGGCGCGTTGCAAAAGA
CGCTTGCGGCGCGCGAAGGCGCGTTGGCCGACCAAACGGCGGAGAGTGAA
CGACTGAGCGCCGCGTTGAAGGAGAAGGAGCAGCAATGTGAAGATGTGAA
GGCTGACTTGGCGAAGGAGAGTGAGTTGTTGGCTGCGGCTAACACCAAGT
TGTCGGAGGCGAACGCCGCTAACGAGGCGCTCACCACGCAGTTGCAGGAA
CAAACGGCGCGTGCTGACGCGCTGCAGAAGGAACTGACGGATGAGAAGGA
GGCTTTAGCGGAGAGTGATAAGCAACTGACCACGGAACGCGAGGCGCATG
TGGTCACCAAAGGTGAACTGGAGGGGGAGACGAAGAAGCTACAGGAGACA
CAGGCTACGTTGACGGAGAAGGAGGGCATGTTGAAGACGCTGGGTGAGGA
GAAGGAGGCGCTGAACACGAAGCTGACGGAGGTGCAGTCGGAGCTGGACA
CGTCGCGAGGAGAATCGGAGACGCTGCGCGGTGAGGTAGGTGATAGGGAA
ACGAAGCTGGCCGCGAAGACGGCGGAGGGAGAACAGGCGATGAAGGAGGC
GGGCGAGAGAGAGCTGGCGCTGAACGGGGAGAAGGACACGTTGCAAAAGT
CATTGGACGAGCTCAAGGCGACGGAAGGTGAGCTGAGGGAGCAGCTGGAG
AAGGTGGGCATGGAGAAGAGCGAGGTGGAGAAGGAGAGGGACGAGGGcct
gaaggaacgcgatgagctgaaggaggaactgcgacaggctaggacggagc
tggaggactggatgcgtgagatcaagatggcggagcagggcgcggacgga
gatggagatggcggcggcgccgaggtggcggacgggcaggctgacggtgg
ggtcgacatgaacggagtgagcggCGAGGGCGTGGAGCAGGGCTTAGCTC
CGCCCCCTGCGGCTGAGGAGGGCGTGGAGCAGGGGTTGGCTCCGCCCCCG
GCGGCTGAGGAGGGCGCGTAG

protein sequence of Gcaud1698.t1

>Gcaud1698.t1 ID=Gcaud1698.t1|Name=Gcaud1698.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=507bp
MTDPPRRDMFSFLNLNPLRLLRRDKLRPTTNPPESSPQPSSSEQIDQLNT
KLRDSQTAHNAVAADFDALKQQHAQTATEFDALREKNAVTVEQFDALQDV
HTAVLAELESLKSAHAEKLSQLESLTATNAQTVANNAALNEQLSSLSKQH
EQQSAQMSQLQDENVRLSELLSQVRAHHGALQKTLAAREGALADQTAESE
RLSAALKEKEQQCEDVKADLAKESELLAAANTKLSEANAANEALTTQLQE
QTARADALQKELTDEKEALAESDKQLTTEREAHVVTKGELEGETKKLQET
QATLTEKEGMLKTLGEEKEALNTKLTEVQSELDTSRGESETLRGEVGDRE
TKLAAKTAEGEQAMKEAGERELALNGEKDTLQKSLDELKATEGELREQLE
KVGMEKSEVEKERDEGLKERDELKEELRQARTELEDWMREIKMAEQGADG
DGDGGGAEVADGQADGGVDMNGVSGEGVEQGLAPPPAAEEGVEQGLAPPP
AAEEGA*

mRNA from alignment at NODE_981_length_15546_cov_4.499191:7894..9414+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1698.t1 ID=Gcaud1698.t1|Name=Gcaud1698.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at NODE_981_length_15546_cov_4.499191:7894..9414+ (Gracilaria caudata M_176_S67 male)
ATGACAGACCCGCCGCGTCGCGACATGTTTTCCTTTTTGAACCTCAACCC
ACTTCGTCTGTTACGTCGCGACAAGCTACGCCCCACCACCAACCCGCCCG
AGTCCTCGCCACAACCGTCTTCCTCCGAACAGATCGATCAACTCAACACC
AAGTTACGCGACTCACAGACTGCGCACAACGCCGTAGCGGCCGATTTCGA
CGCGCTCAAACAGCAACACGCGCAGACCGCCACTGAATTTGACGCGTTGC
GAGAGAAAAACGCCGTGACAGTGGAACAGTTTGACGCACTTCAGGACGTT
CACACCGCCGTGCTTGCCGAACTCGAGTCTTTGAAGAGTGCGCACGCCGA
GAAGCTCTCGCAACTTGAATCACTCACCGCTACAAACGCTCAGACTGTGG
CCAACAACGCCGCGTTGAACGAACAGTTGTCGTCGCTGTCCAAGCAACAC
GAACAACAGAGTGCACAAATGTCGCAACTACAGGACGAGAACGTGCGACT
GTCCGAGCTGTTGTCGCAGGTTCGCGCGCACCATGGCGCGTTGCAAAAGA
CGCTTGCGGCGCGCGAAGGCGCGTTGGCCGACCAAACGGCGGAGAGTGAA
CGACTGAGCGCCGCGTTGAAGGAGAAGGAGCAGCAATGTGAAGATGTGAA
GGCTGACTTGGCGAAGGAGAGTGAGTTGTTGGCTGCGGCTAACACCAAGT
TGTCGGAGGCGAACGCCGCTAACGAGGCGCTCACCACGCAGTTGCAGGAA
CAAACGGCGCGTGCTGACGCGCTGCAGAAGGAACTGACGGATGAGAAGGA
GGCTTTAGCGGAGAGTGATAAGCAACTGACCACGGAACGCGAGGCGCATG
TGGTCACCAAAGGTGAACTGGAGGGGGAGACGAAGAAGCTACAGGAGACA
CAGGCTACGTTGACGGAGAAGGAGGGCATGTTGAAGACGCTGGGTGAGGA
GAAGGAGGCGCTGAACACGAAGCTGACGGAGGTGCAGTCGGAGCTGGACA
CGTCGCGAGGAGAATCGGAGACGCTGCGCGGTGAGGTAGGTGATAGGGAA
ACGAAGCTGGCCGCGAAGACGGCGGAGGGAGAACAGGCGATGAAGGAGGC
GGGCGAGAGAGAGCTGGCGCTGAACGGGGAGAAGGACACGTTGCAAAAGT
CATTGGACGAGCTCAAGGCGACGGAAGGTGAGCTGAGGGAGCAGCTGGAG
AAGGTGGGCATGGAGAAGAGCGAGGTGGAGAAGGAGAGGGACGAGGGcct
gaaggaacgcgatgagctgaaggaggaactgcgacaggctaggacggagc
tggaggactggatgcgtgagatcaagatggcggagcagggcgcggacgga
gatggagatggcggcggcgccgaggtggcggacgggcaggctgacggtgg
ggtcgacatgaacggagtgagcggCGAGGGCGTGGAGCAGGGCTTAGCTC
CGCCCCCTGCGGCTGAGGAGGGCGTGGAGCAGGGGTTGGCTCCGCCCCCG
GCGGCTGAGGAGGGCGCGTAG

Coding sequence (CDS) from alignment at NODE_981_length_15546_cov_4.499191:7894..9414+

>Gcaud1698.t1 ID=Gcaud1698.t1|Name=Gcaud1698.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1521bp|location=Sequence derived from alignment at NODE_981_length_15546_cov_4.499191:7894..9414+ (Gracilaria caudata M_176_S67 male)
ATGACAGACCCGCCGCGTCGCGACATGTTTTCCTTTTTGAACCTCAACCC
ACTTCGTCTGTTACGTCGCGACAAGCTACGCCCCACCACCAACCCGCCCG
AGTCCTCGCCACAACCGTCTTCCTCCGAACAGATCGATCAACTCAACACC
AAGTTACGCGACTCACAGACTGCGCACAACGCCGTAGCGGCCGATTTCGA
CGCGCTCAAACAGCAACACGCGCAGACCGCCACTGAATTTGACGCGTTGC
GAGAGAAAAACGCCGTGACAGTGGAACAGTTTGACGCACTTCAGGACGTT
CACACCGCCGTGCTTGCCGAACTCGAGTCTTTGAAGAGTGCGCACGCCGA
GAAGCTCTCGCAACTTGAATCACTCACCGCTACAAACGCTCAGACTGTGG
CCAACAACGCCGCGTTGAACGAACAGTTGTCGTCGCTGTCCAAGCAACAC
GAACAACAGAGTGCACAAATGTCGCAACTACAGGACGAGAACGTGCGACT
GTCCGAGCTGTTGTCGCAGGTTCGCGCGCACCATGGCGCGTTGCAAAAGA
CGCTTGCGGCGCGCGAAGGCGCGTTGGCCGACCAAACGGCGGAGAGTGAA
CGACTGAGCGCCGCGTTGAAGGAGAAGGAGCAGCAATGTGAAGATGTGAA
GGCTGACTTGGCGAAGGAGAGTGAGTTGTTGGCTGCGGCTAACACCAAGT
TGTCGGAGGCGAACGCCGCTAACGAGGCGCTCACCACGCAGTTGCAGGAA
CAAACGGCGCGTGCTGACGCGCTGCAGAAGGAACTGACGGATGAGAAGGA
GGCTTTAGCGGAGAGTGATAAGCAACTGACCACGGAACGCGAGGCGCATG
TGGTCACCAAAGGTGAACTGGAGGGGGAGACGAAGAAGCTACAGGAGACA
CAGGCTACGTTGACGGAGAAGGAGGGCATGTTGAAGACGCTGGGTGAGGA
GAAGGAGGCGCTGAACACGAAGCTGACGGAGGTGCAGTCGGAGCTGGACA
CGTCGCGAGGAGAATCGGAGACGCTGCGCGGTGAGGTAGGTGATAGGGAA
ACGAAGCTGGCCGCGAAGACGGCGGAGGGAGAACAGGCGATGAAGGAGGC
GGGCGAGAGAGAGCTGGCGCTGAACGGGGAGAAGGACACGTTGCAAAAGT
CATTGGACGAGCTCAAGGCGACGGAAGGTGAGCTGAGGGAGCAGCTGGAG
AAGGTGGGCATGGAGAAGAGCGAGGTGGAGAAGGAGAGGGACGAGGGcct
gaaggaacgcgatgagctgaaggaggaactgcgacaggctaggacggagc
tggaggactggatgcgtgagatcaagatggcggagcagggcgcggacgga
gatggagatggcggcggcgccgaggtggcggacgggcaggctgacggtgg
ggtcgacatgaacggagtgagcggCGAGGGCGTGGAGCAGGGCTTAGCTC
CGCCCCCTGCGGCTGAGGAGGGCGTGGAGCAGGGGTTGGCTCCGCCCCCG
GCGGCTGAGGAGGGCGCGTAG