|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 5786.XP_003290934.1 |
| Max annot lvl | 554915|Amoebozoa |
| Evalue | 0.000179 |
| EggNOG OGs | 28NWC@1|root,2QVGG@2759|Eukaryota,3XDMP@554915|Amoebozoa |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1691.t1.stop1 | Gcaud1691.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_676_length_19860_cov_4.402802 7357..7359 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1691.t1.start1 | Gcaud1691.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_676_length_19860_cov_4.402802 9967..9969 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1691.t1 ID=Gcaud1691.t1|Name=Gcaud1691.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=871bp MSSSPLPHVSDDLKIWSYEEAETVEDSEEPCSSAIRLPATKFPERGRNHG KDDTPPPLPPKPAFARLQSETPPPLPPKPDFIRLGLIPQSAPPPLPPKPD FARADKPVDALGKRRSYPFSSANVATDNAAQNFIPPPPTRPVPPVPKSDR KPSYGEEGSWVPSFPDERNPLDPPQPPEPTIVSDGDIHRSSIGMEATELN APFLSDQLPRLKASFPQPPYPLRSYRLASTYQTLNVSEQSENLNDAALLT LSAEDAEDALYGAFAVSRRRVKHLPSSNFRRRAPVPWRPYESREPTGQAW KVLHEYLTNDSLKTHGRNRALLLLTGYVVGACLEGMETGINLLTEIVRRM RGAERSERDGSAFTLLVNIAAHASFVKGSAWSRVEEVARKVFSDVVEDMH GRQDDDVMWERALRCYLFLLKSSDKHPSINISSKCLAALALRMNELTHTD VDHVLICNGLYPRLHETWDEFLTSAKLNMDYLEDVGGLQTVLTLFADTFS PSARRQLFVLIYDFAVLKYLEGLTEDVVVRHRDNIDSFRALLECHEMENV LTHVFKVGPWDGFVVDMLRVLLFNSLTIEYLGTRTENSSDEDQNVGRRAF QEKTGSASESDSRLGSQVGKPYRVPASRYISSSRALVKYLDKPFCISVLR EIEAMAIHHSKFLFQRETMDHAREWKILRETYFTILRFTFARRGVVDGEL SDVLNKLYASVVEITSCRSSVKGLLRMSEMIIEFFVVTTPFVPRSKSRSL QWDSTSKMILKGSVSVPRQVLLEANPSMFSLLLLASNVKVPCKRLSESRQ CLIEFLGASKGGSSVVTPFVEDNDPIVAYRATELINSQSEVDRNSEATAG QSKLKCGSQENPQDSGPQDV* back to topspliced messenger RNA >Gcaud1691.t1 ID=Gcaud1691.t1|Name=Gcaud1691.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2613bp|location=Sequence derived from alignment at NODE_676_length_19860_cov_4.402802:7357..9969- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTCTTCCTCACCACTACCCCACGTCAGCGATGATCTGAAGATCTGGTC CTACGAGGAAGCAGAAACCGTTGAAGACTCAGAGGAACCATGCAGCTCTG CAATCAGGTTACCTGCGACCAAGTTTCCAGAAAGGGGGCGAAACCATGGA AAGGATGATACACCGCCGCCGCTGCCTCCGAAACCCGCTTTCGCTCGCTT GCAGTCCGAAACGCCACCGCCTCTTCCACCGAAGCCAGATTTCATACGCC TTGGACTCATCCCACAGAGCGCTCCTCCTCCGCTTCCTCCAAAACCGGAT TTTGCCAGGGCTGACAAACCTGTGGATGCTCTTGGAAAGCGAAGGTCTTA TCCTTTTTCTTCGGCGAATGTTGCCACCGACAATGCCGCTCAAAACTTTA TACCACCTCCACCAACTAGGCCGGTGCCACCAGTTCCAAAATCCGATCGT AAACCCAGTTATGGGGAGGAGGGTTCGTGGGTGCCCAGCTTTCCAGATGA ACGAAATCCACTCGATCCCCCGCAACCACCAGAACCCACCATTGTTTCTG ATGGGGACATCCATCGTTCTTCCATTGGTATGGAAGCTACGGAGCTAAAT GCACCATTTCTATCAGATCAACTCCCGAGGTTGAAGGCCAGCTTTCCTCA GCCTCCATATCCTCTTCGCAGCTACCGTCTGGCGTCTACCTACCAAACTT TAAACGTTTCAGAACAAAGCGAAAACTTAAACGACGCTGCGCTGCTCACT TTGTCAGCTGAAGATGCAGAAGATGCCTTATACGGAGCCTTCGCCGTTAG TCGTCGAAGAGTGAAGCATTTGCCATCCTCAAATTTTCGACGACGAGCTC CTGTTCCGTGGCGCCCTTACGAAAGTCGTGAACCTACAGGTCAGGCATGG AAGGTTTTGCACGAATATCTTACGAATGACTCGTTGAAGACACATGGGAG AAACAGGGCTTTGTTACTGCTCACAGGATATGTAGTTGGGGCATGCCTTG AGGGGATGGAGACAGGAATCAATCTATTAACAGAAATCGTTCGGAGAATG CGCGGCGCAGAACGCAGTGAGCGAGATGGATCTGCCTTTACCCTTTTGGT GAATATCGCAGCACATGCCAGCTTCGTTAAGGGTTCAGCTTGGTCCCGAG TAGAAGAAGTTGCTCGAAAGGTTTTCTCTGATGTTGTAGAGGATATGCAC GGTCGTCAAGATGATGATGTCATGTGGGAACGTGCCTTGCGGTGTTATCT GTTCCTACTGAAGTCAAGCGATAAGCATCCCAGCATCAACATTTCATCGA AATGTCTCGCAGCTCTTGCTCTCCGCATGAATGAGCTGACGCACACCGAC GTGGATCACGTCTTGATTTGCAATGGTCTTTACCCAAGACTGCATGAGAC CTGGGATGAGTTTCTCACTTCGGCAAAACTCAATATGGACTACTTGGAAG ACGTGGGAGGCCTCCAAACCGTCCTGACGTTGTTTGCAGATACTTTTTCC CCTTCTGCTCGCCGTCAATTGTTTGTCCTGATATATGATTTTGCCGTTTT AAAATATCTTGAGGGCCTCACGGAAGATGTAGTTGTGCGACATCGTGATA ATATAGACAGCTTTCGAGCGCTTCTTGAATGTCACGAAATGGAAAATGTA CTGACACATGTGTTCAAAGTGGGTCCTTGGGATGGTTTTGTTGTTGACAT GCTGCGTGTGCTCTTGTTCAACTCATTAACTATTGAATATCTAGGAACTC GTACTGAGAACTCGAGTGACGAAGATCAAAACGTCGGAAGAAGGGCCTTC CAAGAAAAAACGGGAAGTGCATCAGAGAGCGATTCACGACTTGGGAGTCA GGTTGGAAAGCCTTACAGAGTTCCTGCGTCCAGATACATTTCGTCCTCTC GAGCACTCGTGAAATACCTGGATAAACCTTTCTGCATATCCGTGCTCAGA GAGATTGAAGCAATGGCCATTCATCATTCGAAGTTCTTATTCCAAAGGGA AACCATGGATCATGCGAGAGAGTGGAAGATTCTTCGGGAAACTTACTTTA CAATTTTGAGGTTCACTTTTGCAAGAAGAGGAGTTGTTGATGGCGAACTG TCTGATGTCTTGAACAAGCTGTATGCGTCTGTAGTTGAGATAACTTCGTG CAGATCGAGCGTGAAAGGTTTACTGCGAATGAGTGAGATGATCATCGAAT TTTTTGTCGTGACTACTCCGTTTGTACCTCGCAGCAAGTCTCGGTCGCTT CAGTGGGACTCGACCTCGAAGATGATTCTCAAGGGTTCAGTCTCCGTGCC TCGCCAAGTACTATTGGAAGCAAATCCGTCAATGTTCTCGTTGCTTTTAT TAGCATCTAATGTGAAGGTACCGTGCAAACGTCTCTCCGAAAGCCGCCAA TGTCTTATCGAATTTCTTGGAGCCTCTAAAGGAGGTTCAAGTGTTGTGAC ACCTTTTGTCGAAGATAACGACCCAATTGTCGCTTACCGTGCAACTGAGC TGATTAACAGTCAAAGTGAAGTCGATCGAAATTCAGAGGCAACAGCCGGT CAGAGCAAGCTCAAGTGCGGCAGTCAGGAGAATCCTCAAGACTCCGGTCC TCAAGATGTGTAG back to topprotein sequence of Gcaud1691.t1 >Gcaud1691.t1 ID=Gcaud1691.t1|Name=Gcaud1691.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=871bp
MSSSPLPHVSDDLKIWSYEEAETVEDSEEPCSSAIRLPATKFPERGRNHG KDDTPPPLPPKPAFARLQSETPPPLPPKPDFIRLGLIPQSAPPPLPPKPD FARADKPVDALGKRRSYPFSSANVATDNAAQNFIPPPPTRPVPPVPKSDR KPSYGEEGSWVPSFPDERNPLDPPQPPEPTIVSDGDIHRSSIGMEATELN APFLSDQLPRLKASFPQPPYPLRSYRLASTYQTLNVSEQSENLNDAALLT LSAEDAEDALYGAFAVSRRRVKHLPSSNFRRRAPVPWRPYESREPTGQAW KVLHEYLTNDSLKTHGRNRALLLLTGYVVGACLEGMETGINLLTEIVRRM RGAERSERDGSAFTLLVNIAAHASFVKGSAWSRVEEVARKVFSDVVEDMH GRQDDDVMWERALRCYLFLLKSSDKHPSINISSKCLAALALRMNELTHTD VDHVLICNGLYPRLHETWDEFLTSAKLNMDYLEDVGGLQTVLTLFADTFS PSARRQLFVLIYDFAVLKYLEGLTEDVVVRHRDNIDSFRALLECHEMENV LTHVFKVGPWDGFVVDMLRVLLFNSLTIEYLGTRTENSSDEDQNVGRRAF QEKTGSASESDSRLGSQVGKPYRVPASRYISSSRALVKYLDKPFCISVLR EIEAMAIHHSKFLFQRETMDHAREWKILRETYFTILRFTFARRGVVDGEL SDVLNKLYASVVEITSCRSSVKGLLRMSEMIIEFFVVTTPFVPRSKSRSL QWDSTSKMILKGSVSVPRQVLLEANPSMFSLLLLASNVKVPCKRLSESRQ CLIEFLGASKGGSSVVTPFVEDNDPIVAYRATELINSQSEVDRNSEATAG QSKLKCGSQENPQDSGPQDV* back to topmRNA from alignment at NODE_676_length_19860_cov_4.402802:7357..9969- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1691.t1 ID=Gcaud1691.t1|Name=Gcaud1691.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2613bp|location=Sequence derived from alignment at NODE_676_length_19860_cov_4.402802:7357..9969- (Gracilaria caudata M_176_S67 male) ATGTCTTCCTCACCACTACCCCACGTCAGCGATGATCTGAAGATCTGGTC
CTACGAGGAAGCAGAAACCGTTGAAGACTCAGAGGAACCATGCAGCTCTG
CAATCAGGTTACCTGCGACCAAGTTTCCAGAAAGGGGGCGAAACCATGGA
AAGGATGATACACCGCCGCCGCTGCCTCCGAAACCCGCTTTCGCTCGCTT
GCAGTCCGAAACGCCACCGCCTCTTCCACCGAAGCCAGATTTCATACGCC
TTGGACTCATCCCACAGAGCGCTCCTCCTCCGCTTCCTCCAAAACCGGAT
TTTGCCAGGGCTGACAAACCTGTGGATGCTCTTGGAAAGCGAAGGTCTTA
TCCTTTTTCTTCGGCGAATGTTGCCACCGACAATGCCGCTCAAAACTTTA
TACCACCTCCACCAACTAGGCCGGTGCCACCAGTTCCAAAATCCGATCGT
AAACCCAGTTATGGGGAGGAGGGTTCGTGGGTGCCCAGCTTTCCAGATGA
ACGAAATCCACTCGATCCCCCGCAACCACCAGAACCCACCATTGTTTCTG
ATGGGGACATCCATCGTTCTTCCATTGGTATGGAAGCTACGGAGCTAAAT
GCACCATTTCTATCAGATCAACTCCCGAGGTTGAAGGCCAGCTTTCCTCA
GCCTCCATATCCTCTTCGCAGCTACCGTCTGGCGTCTACCTACCAAACTT
TAAACGTTTCAGAACAAAGCGAAAACTTAAACGACGCTGCGCTGCTCACT
TTGTCAGCTGAAGATGCAGAAGATGCCTTATACGGAGCCTTCGCCGTTAG
TCGTCGAAGAGTGAAGCATTTGCCATCCTCAAATTTTCGACGACGAGCTC
CTGTTCCGTGGCGCCCTTACGAAAGTCGTGAACCTACAGGTCAGGCATGG
AAGGTTTTGCACGAATATCTTACGAATGACTCGTTGAAGACACATGGGAG
AAACAGGGCTTTGTTACTGCTCACAGGATATGTAGTTGGGGCATGCCTTG
AGGGGATGGAGACAGGAATCAATCTATTAACAGAAATCGTTCGGAGAATG
CGCGGCGCAGAACGCAGTGAGCGAGATGGATCTGCCTTTACCCTTTTGGT
GAATATCGCAGCACATGCCAGCTTCGTTAAGGGTTCAGCTTGGTCCCGAG
TAGAAGAAGTTGCTCGAAAGGTTTTCTCTGATGTTGTAGAGGATATGCAC
GGTCGTCAAGATGATGATGTCATGTGGGAACGTGCCTTGCGGTGTTATCT
GTTCCTACTGAAGTCAAGCGATAAGCATCCCAGCATCAACATTTCATCGA
AATGTCTCGCAGCTCTTGCTCTCCGCATGAATGAGCTGACGCACACCGAC
GTGGATCACGTCTTGATTTGCAATGGTCTTTACCCAAGACTGCATGAGAC
CTGGGATGAGTTTCTCACTTCGGCAAAACTCAATATGGACTACTTGGAAG
ACGTGGGAGGCCTCCAAACCGTCCTGACGTTGTTTGCAGATACTTTTTCC
CCTTCTGCTCGCCGTCAATTGTTTGTCCTGATATATGATTTTGCCGTTTT
AAAATATCTTGAGGGCCTCACGGAAGATGTAGTTGTGCGACATCGTGATA
ATATAGACAGCTTTCGAGCGCTTCTTGAATGTCACGAAATGGAAAATGTA
CTGACACATGTGTTCAAAGTGGGTCCTTGGGATGGTTTTGTTGTTGACAT
GCTGCGTGTGCTCTTGTTCAACTCATTAACTATTGAATATCTAGGAACTC
GTACTGAGAACTCGAGTGACGAAGATCAAAACGTCGGAAGAAGGGCCTTC
CAAGAAAAAACGGGAAGTGCATCAGAGAGCGATTCACGACTTGGGAGTCA
GGTTGGAAAGCCTTACAGAGTTCCTGCGTCCAGATACATTTCGTCCTCTC
GAGCACTCGTGAAATACCTGGATAAACCTTTCTGCATATCCGTGCTCAGA
GAGATTGAAGCAATGGCCATTCATCATTCGAAGTTCTTATTCCAAAGGGA
AACCATGGATCATGCGAGAGAGTGGAAGATTCTTCGGGAAACTTACTTTA
CAATTTTGAGGTTCACTTTTGCAAGAAGAGGAGTTGTTGATGGCGAACTG
TCTGATGTCTTGAACAAGCTGTATGCGTCTGTAGTTGAGATAACTTCGTG
CAGATCGAGCGTGAAAGGTTTACTGCGAATGAGTGAGATGATCATCGAAT
TTTTTGTCGTGACTACTCCGTTTGTACCTCGCAGCAAGTCTCGGTCGCTT
CAGTGGGACTCGACCTCGAAGATGATTCTCAAGGGTTCAGTCTCCGTGCC
TCGCCAAGTACTATTGGAAGCAAATCCGTCAATGTTCTCGTTGCTTTTAT
TAGCATCTAATGTGAAGGTACCGTGCAAACGTCTCTCCGAAAGCCGCCAA
TGTCTTATCGAATTTCTTGGAGCCTCTAAAGGAGGTTCAAGTGTTGTGAC
ACCTTTTGTCGAAGATAACGACCCAATTGTCGCTTACCGTGCAACTGAGC
TGATTAACAGTCAAAGTGAAGTCGATCGAAATTCAGAGGCAACAGCCGGT
CAGAGCAAGCTCAAGTGCGGCAGTCAGGAGAATCCTCAAGACTCCGGTCC
TCAAGATGTGTAG back to topCoding sequence (CDS) from alignment at NODE_676_length_19860_cov_4.402802:7357..9969- >Gcaud1691.t1 ID=Gcaud1691.t1|Name=Gcaud1691.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2613bp|location=Sequence derived from alignment at NODE_676_length_19860_cov_4.402802:7357..9969- (Gracilaria caudata M_176_S67 male) ATGTCTTCCTCACCACTACCCCACGTCAGCGATGATCTGAAGATCTGGTC CTACGAGGAAGCAGAAACCGTTGAAGACTCAGAGGAACCATGCAGCTCTG CAATCAGGTTACCTGCGACCAAGTTTCCAGAAAGGGGGCGAAACCATGGA AAGGATGATACACCGCCGCCGCTGCCTCCGAAACCCGCTTTCGCTCGCTT GCAGTCCGAAACGCCACCGCCTCTTCCACCGAAGCCAGATTTCATACGCC TTGGACTCATCCCACAGAGCGCTCCTCCTCCGCTTCCTCCAAAACCGGAT TTTGCCAGGGCTGACAAACCTGTGGATGCTCTTGGAAAGCGAAGGTCTTA TCCTTTTTCTTCGGCGAATGTTGCCACCGACAATGCCGCTCAAAACTTTA TACCACCTCCACCAACTAGGCCGGTGCCACCAGTTCCAAAATCCGATCGT AAACCCAGTTATGGGGAGGAGGGTTCGTGGGTGCCCAGCTTTCCAGATGA ACGAAATCCACTCGATCCCCCGCAACCACCAGAACCCACCATTGTTTCTG ATGGGGACATCCATCGTTCTTCCATTGGTATGGAAGCTACGGAGCTAAAT GCACCATTTCTATCAGATCAACTCCCGAGGTTGAAGGCCAGCTTTCCTCA GCCTCCATATCCTCTTCGCAGCTACCGTCTGGCGTCTACCTACCAAACTT TAAACGTTTCAGAACAAAGCGAAAACTTAAACGACGCTGCGCTGCTCACT TTGTCAGCTGAAGATGCAGAAGATGCCTTATACGGAGCCTTCGCCGTTAG TCGTCGAAGAGTGAAGCATTTGCCATCCTCAAATTTTCGACGACGAGCTC CTGTTCCGTGGCGCCCTTACGAAAGTCGTGAACCTACAGGTCAGGCATGG AAGGTTTTGCACGAATATCTTACGAATGACTCGTTGAAGACACATGGGAG AAACAGGGCTTTGTTACTGCTCACAGGATATGTAGTTGGGGCATGCCTTG AGGGGATGGAGACAGGAATCAATCTATTAACAGAAATCGTTCGGAGAATG CGCGGCGCAGAACGCAGTGAGCGAGATGGATCTGCCTTTACCCTTTTGGT GAATATCGCAGCACATGCCAGCTTCGTTAAGGGTTCAGCTTGGTCCCGAG TAGAAGAAGTTGCTCGAAAGGTTTTCTCTGATGTTGTAGAGGATATGCAC GGTCGTCAAGATGATGATGTCATGTGGGAACGTGCCTTGCGGTGTTATCT GTTCCTACTGAAGTCAAGCGATAAGCATCCCAGCATCAACATTTCATCGA AATGTCTCGCAGCTCTTGCTCTCCGCATGAATGAGCTGACGCACACCGAC GTGGATCACGTCTTGATTTGCAATGGTCTTTACCCAAGACTGCATGAGAC CTGGGATGAGTTTCTCACTTCGGCAAAACTCAATATGGACTACTTGGAAG ACGTGGGAGGCCTCCAAACCGTCCTGACGTTGTTTGCAGATACTTTTTCC CCTTCTGCTCGCCGTCAATTGTTTGTCCTGATATATGATTTTGCCGTTTT AAAATATCTTGAGGGCCTCACGGAAGATGTAGTTGTGCGACATCGTGATA ATATAGACAGCTTTCGAGCGCTTCTTGAATGTCACGAAATGGAAAATGTA CTGACACATGTGTTCAAAGTGGGTCCTTGGGATGGTTTTGTTGTTGACAT GCTGCGTGTGCTCTTGTTCAACTCATTAACTATTGAATATCTAGGAACTC GTACTGAGAACTCGAGTGACGAAGATCAAAACGTCGGAAGAAGGGCCTTC CAAGAAAAAACGGGAAGTGCATCAGAGAGCGATTCACGACTTGGGAGTCA GGTTGGAAAGCCTTACAGAGTTCCTGCGTCCAGATACATTTCGTCCTCTC GAGCACTCGTGAAATACCTGGATAAACCTTTCTGCATATCCGTGCTCAGA GAGATTGAAGCAATGGCCATTCATCATTCGAAGTTCTTATTCCAAAGGGA AACCATGGATCATGCGAGAGAGTGGAAGATTCTTCGGGAAACTTACTTTA CAATTTTGAGGTTCACTTTTGCAAGAAGAGGAGTTGTTGATGGCGAACTG TCTGATGTCTTGAACAAGCTGTATGCGTCTGTAGTTGAGATAACTTCGTG CAGATCGAGCGTGAAAGGTTTACTGCGAATGAGTGAGATGATCATCGAAT TTTTTGTCGTGACTACTCCGTTTGTACCTCGCAGCAAGTCTCGGTCGCTT CAGTGGGACTCGACCTCGAAGATGATTCTCAAGGGTTCAGTCTCCGTGCC TCGCCAAGTACTATTGGAAGCAAATCCGTCAATGTTCTCGTTGCTTTTAT TAGCATCTAATGTGAAGGTACCGTGCAAACGTCTCTCCGAAAGCCGCCAA TGTCTTATCGAATTTCTTGGAGCCTCTAAAGGAGGTTCAAGTGTTGTGAC ACCTTTTGTCGAAGATAACGACCCAATTGTCGCTTACCGTGCAACTGAGC TGATTAACAGTCAAAGTGAAGTCGATCGAAATTCAGAGGCAACAGCCGGT CAGAGCAAGCTCAAGTGCGGCAGTCAGGAGAATCCTCAAGACTCCGGTCC TCAAGATGTGTAG back to top
|