Gcaud169.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud169.t1
Unique Name	Gcaud169.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	311

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1883_length_7897_cov_5.365744	contig	NODE_1883_length_7897_cov_5.365744:5108..6040 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud169	Gcaud169	Gracilaria caudata M_176_S67 male	gene	NODE_1883_length_7897_cov_5.365744 5108..6040 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud169.t1.stop1	Gcaud169.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1883_length_7897_cov_5.365744 5108..5110 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud169.t1.CDS1	Gcaud169.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1883_length_7897_cov_5.365744 5108..6040 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud169.t1.exon1	Gcaud169.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1883_length_7897_cov_5.365744 5108..6040 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud169.t1.start1	Gcaud169.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1883_length_7897_cov_5.365744 6038..6040 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud169.t1	Gcaud169.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1883_length_7897_cov_5.365744 5108..6040 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1883_length_7897_cov_5.365744:5108..6040-
coding sequence from alignment at NODE_1883_length_7897_cov_5.365744:5108..6040-

mRNA sequence

>Gcaud169.t1 ID=Gcaud169.t1|Name=Gcaud169.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=311bp
MFKAMQNTIYSLVIPSVTAVVGVSAAHFYYRSMFEKLNSETGQLFDEKDK
EVRGLQSQNSDLEHRNKTLSCALEECEKRYGVSQRNLEVSVEEKQMITSQ
RDEAIANRNTAVENLESCEVEKELASIHLRRSEQEISELHAELERASQNA
LEMNNECTRLTEEANILEEESHNLKILSANRGDEIDSHLLTIRHLNDYIA
EMGDKDVSIQSLREHISTLEATLSQQQSQLLAYEEYLGQTEKRHQAQLDF
CLEKIQALLQEREDESRELKTFLTTHPHLDIDIALTLNADRRQQSAGSGL
SSGSSSSFSL*

spliced messenger RNA

>Gcaud169.t1 ID=Gcaud169.t1|Name=Gcaud169.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=933bp|location=Sequence derived from alignment at NODE_1883_length_7897_cov_5.365744:5108..6040- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTAAGGCAATGCAGAACACCATATATTCCTTGGTGATTCCGTCAGT
GACGGCTGTCGTTGGAGTTTCTGCCGCTCATTTTTACTACAGGAGCATGT
TTGAGAAGCTGAACTCAGAGACAGGGCAGCTATTCGACGAGAAGGACAAA
GAGGTCCGTGGCCTTCAGAGCCAGAACTCTGATCTGGAACACAGGAACAA
AACTCTATCTTGCGCTCTTGAAGAATGCGAGAAACGCTATGGTGTTTCTC
AAAGGAATCTGGAAGTTTCTGTAGAAGAGAAACAGATGATAACCTCGCAA
CGTGACGAAGCGATTGCGAACAGAAACACGGCCGTGGAGAATCTTGAAAG
CTGTGAGGTCGAAAAAGAGCTTGCTTCGATTCATTTGCGACGTTCGGAAC
AAGAAATTAGCGAACTTCATGCGGAGCTGGAAAGAGCATCCCAGAATGCA
CTGGAAATGAATAACGAATGCACCCGTCTGACCGAAGAAGCTAACATATT
GGAAGAAGAGAGTCATAATCTCAAAATTCTTTCCGCTAATAGGGGTGATG
AGATCGACTCTCACTTGTTGACCATAAGGCATCTCAACGATTACATCGCG
GAGATGGGTGACAAAGATGTAAGCATACAATCTTTAAGAGAGCACATCTC
AACGTTGGAAGCCACTCTTTCACAGCAACAATCCCAGTTGCTTGCTTATG
AAGAGTACCTGGGACAAACGGAGAAGCGTCATCAAGCTCAACTTGATTTC
TGTCTCGAAAAAATCCAAGCCCTGCTACAAGAGCGTGAAGACGAAAGCAG
GGAGTTGAAAACTTTCTTGACAACTCACCCGCATTTAGATATTGACATCG
CCCTCACTCTGAATGCAGATCGTCGTCAACAATCTGCTGGCTCCGGATTA
TCTTCCGGGTCATCGTCTTCATTTTCTCTCTGA

protein sequence of Gcaud169.t1

>Gcaud169.t1 ID=Gcaud169.t1|Name=Gcaud169.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=311bp
MFKAMQNTIYSLVIPSVTAVVGVSAAHFYYRSMFEKLNSETGQLFDEKDK
EVRGLQSQNSDLEHRNKTLSCALEECEKRYGVSQRNLEVSVEEKQMITSQ
RDEAIANRNTAVENLESCEVEKELASIHLRRSEQEISELHAELERASQNA
LEMNNECTRLTEEANILEEESHNLKILSANRGDEIDSHLLTIRHLNDYIA
EMGDKDVSIQSLREHISTLEATLSQQQSQLLAYEEYLGQTEKRHQAQLDF
CLEKIQALLQEREDESRELKTFLTTHPHLDIDIALTLNADRRQQSAGSGL
SSGSSSSFSL*

mRNA from alignment at NODE_1883_length_7897_cov_5.365744:5108..6040-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud169.t1 ID=Gcaud169.t1|Name=Gcaud169.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=933bp|location=Sequence derived from alignment at NODE_1883_length_7897_cov_5.365744:5108..6040- (Gracilaria caudata M_176_S67 male)
ATGTTTAAGGCAATGCAGAACACCATATATTCCTTGGTGATTCCGTCAGT
GACGGCTGTCGTTGGAGTTTCTGCCGCTCATTTTTACTACAGGAGCATGT
TTGAGAAGCTGAACTCAGAGACAGGGCAGCTATTCGACGAGAAGGACAAA
GAGGTCCGTGGCCTTCAGAGCCAGAACTCTGATCTGGAACACAGGAACAA
AACTCTATCTTGCGCTCTTGAAGAATGCGAGAAACGCTATGGTGTTTCTC
AAAGGAATCTGGAAGTTTCTGTAGAAGAGAAACAGATGATAACCTCGCAA
CGTGACGAAGCGATTGCGAACAGAAACACGGCCGTGGAGAATCTTGAAAG
CTGTGAGGTCGAAAAAGAGCTTGCTTCGATTCATTTGCGACGTTCGGAAC
AAGAAATTAGCGAACTTCATGCGGAGCTGGAAAGAGCATCCCAGAATGCA
CTGGAAATGAATAACGAATGCACCCGTCTGACCGAAGAAGCTAACATATT
GGAAGAAGAGAGTCATAATCTCAAAATTCTTTCCGCTAATAGGGGTGATG
AGATCGACTCTCACTTGTTGACCATAAGGCATCTCAACGATTACATCGCG
GAGATGGGTGACAAAGATGTAAGCATACAATCTTTAAGAGAGCACATCTC
AACGTTGGAAGCCACTCTTTCACAGCAACAATCCCAGTTGCTTGCTTATG
AAGAGTACCTGGGACAAACGGAGAAGCGTCATCAAGCTCAACTTGATTTC
TGTCTCGAAAAAATCCAAGCCCTGCTACAAGAGCGTGAAGACGAAAGCAG
GGAGTTGAAAACTTTCTTGACAACTCACCCGCATTTAGATATTGACATCG
CCCTCACTCTGAATGCAGATCGTCGTCAACAATCTGCTGGCTCCGGATTA
TCTTCCGGGTCATCGTCTTCATTTTCTCTCTGA

Coding sequence (CDS) from alignment at NODE_1883_length_7897_cov_5.365744:5108..6040-

>Gcaud169.t1 ID=Gcaud169.t1|Name=Gcaud169.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=933bp|location=Sequence derived from alignment at NODE_1883_length_7897_cov_5.365744:5108..6040- (Gracilaria caudata M_176_S67 male)
ATGTTTAAGGCAATGCAGAACACCATATATTCCTTGGTGATTCCGTCAGT
GACGGCTGTCGTTGGAGTTTCTGCCGCTCATTTTTACTACAGGAGCATGT
TTGAGAAGCTGAACTCAGAGACAGGGCAGCTATTCGACGAGAAGGACAAA
GAGGTCCGTGGCCTTCAGAGCCAGAACTCTGATCTGGAACACAGGAACAA
AACTCTATCTTGCGCTCTTGAAGAATGCGAGAAACGCTATGGTGTTTCTC
AAAGGAATCTGGAAGTTTCTGTAGAAGAGAAACAGATGATAACCTCGCAA
CGTGACGAAGCGATTGCGAACAGAAACACGGCCGTGGAGAATCTTGAAAG
CTGTGAGGTCGAAAAAGAGCTTGCTTCGATTCATTTGCGACGTTCGGAAC
AAGAAATTAGCGAACTTCATGCGGAGCTGGAAAGAGCATCCCAGAATGCA
CTGGAAATGAATAACGAATGCACCCGTCTGACCGAAGAAGCTAACATATT
GGAAGAAGAGAGTCATAATCTCAAAATTCTTTCCGCTAATAGGGGTGATG
AGATCGACTCTCACTTGTTGACCATAAGGCATCTCAACGATTACATCGCG
GAGATGGGTGACAAAGATGTAAGCATACAATCTTTAAGAGAGCACATCTC
AACGTTGGAAGCCACTCTTTCACAGCAACAATCCCAGTTGCTTGCTTATG
AAGAGTACCTGGGACAAACGGAGAAGCGTCATCAAGCTCAACTTGATTTC
TGTCTCGAAAAAATCCAAGCCCTGCTACAAGAGCGTGAAGACGAAAGCAG
GGAGTTGAAAACTTTCTTGACAACTCACCCGCATTTAGATATTGACATCG
CCCTCACTCTGAATGCAGATCGTCGTCAACAATCTGCTGGCTCCGGATTA
TCTTCCGGGTCATCGTCTTCATTTTCTCTCTGA