Gcaud1687.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1687.t1
Unique Name	Gcaud1687.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	290

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_676_length_19860_cov_4.402802	contig	NODE_676_length_19860_cov_4.402802:1154..2023 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1121948.AUAC01000002_gene948
Max annot lvl	28211\|Alphaproteobacteria
Evalue	1.37e-32
EggNOG OGs	COG0703@1\|root,COG0703@2\|Bacteria,1PXKF@1224\|Proteobacteria,2V7VZ@28211\|Alphaproteobacteria,4405X@69657\|Hyphomonadaceae
Description	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1687	Gcaud1687	Gracilaria caudata M_176_S67 male	gene	NODE_676_length_19860_cov_4.402802 1154..2023 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1687.t1.stop1	Gcaud1687.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_676_length_19860_cov_4.402802 1154..1156 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1687.t1.CDS1	Gcaud1687.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_676_length_19860_cov_4.402802 1154..2023 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1687.t1.exon1	Gcaud1687.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_676_length_19860_cov_4.402802 1154..2023 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1687.t1.start1	Gcaud1687.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_676_length_19860_cov_4.402802 2021..2023 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1687.t1	Gcaud1687.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_676_length_19860_cov_4.402802 1154..2023 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_676_length_19860_cov_4.402802:1154..2023-
coding sequence from alignment at NODE_676_length_19860_cov_4.402802:1154..2023-

mRNA sequence

>Gcaud1687.t1 ID=Gcaud1687.t1|Name=Gcaud1687.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=290bp
MPSNDAAFLGVPLPAYAATRKQPQSFKRPQIVRTSLFPSRRAKKVNITRI
CIELNAASNVRCSASQWESLTPESFDHKLESNSLQLCLVGMSNCGKSHWS
TQLYKHKSFHLICVDDQIEEQITPELQQLGYSGIDGMAKWMGFPSDQRFA
TNQGRYLVHEERITSRAVPNSDGSTVLDTTGSVVYLSDKTLGQLRADYLV
IHLEANDGMLEMMTDNYFKTPKPVVWGDAFNCKEHETPIEAMRRCYPGLL
RQRRERYAELAHITVPAVFSLSREVNVEDFLEYVRQQLQ*

spliced messenger RNA

>Gcaud1687.t1 ID=Gcaud1687.t1|Name=Gcaud1687.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=870bp|location=Sequence derived from alignment at NODE_676_length_19860_cov_4.402802:1154..2023- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCTCAAACGATGCTGCCTTTCTGGGAGTACCACTACCCGCATATGC
CGCCACACGCAAACAACCTCAATCATTTAAGCGACCTCAGATTGTTAGAA
CTTCACTGTTTCCTTCCCGAAGAGCTAAGAAGGTCAATATCACACGCATC
TGCATCGAACTAAATGCCGCGTCAAATGTCCGTTGCAGTGCCTCGCAGTG
GGAATCTCTTACACCTGAGTCTTTCGACCACAAGCTAGAATCGAACAGCC
TTCAATTGTGTCTTGTTGGTATGTCAAACTGCGGCAAATCACATTGGTCT
ACGCAGCTGTACAAACACAAAAGCTTCCATCTAATCTGCGTTGATGACCA
AATCGAAGAACAAATTACCCCAGAACTCCAACAACTTGGATACTCCGGCA
TTGATGGTATGGCGAAGTGGATGGGATTTCCAAGCGATCAGCGTTTTGCG
ACAAATCAAGGTCGGTACCTTGTGCACGAAGAGCGTATCACATCGCGTGC
AGTACCAAACTCGGATGGAAGCACTGTTTTGGATACGACGGGAAGCGTGG
TGTATCTTTCGGACAAGACATTAGGTCAGTTGCGAGCGGATTACCTCGTG
ATTCATCTAGAAGCGAATGATGGCATGCTGGAAATGATGACAGACAACTA
CTTTAAAACTCCAAAACCTGTGGTATGGGGAGATGCGTTTAATTGTAAGG
AGCACGAGACGCCAATAGAGGCGATGAGGCGATGTTATCCAGGCTTGCTC
AGGCAAAGGAGGGAACGATACGCGGAACTGGCACACATCACAGTGCCAGC
TGTGTTCTCTCTCTCGAGAGAAGTTAATGTTGAAGACTTCCTCGAATACG
TGCGCCAGCAACTGCAATGA

protein sequence of Gcaud1687.t1

>Gcaud1687.t1 ID=Gcaud1687.t1|Name=Gcaud1687.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=290bp
MPSNDAAFLGVPLPAYAATRKQPQSFKRPQIVRTSLFPSRRAKKVNITRI
CIELNAASNVRCSASQWESLTPESFDHKLESNSLQLCLVGMSNCGKSHWS
TQLYKHKSFHLICVDDQIEEQITPELQQLGYSGIDGMAKWMGFPSDQRFA
TNQGRYLVHEERITSRAVPNSDGSTVLDTTGSVVYLSDKTLGQLRADYLV
IHLEANDGMLEMMTDNYFKTPKPVVWGDAFNCKEHETPIEAMRRCYPGLL
RQRRERYAELAHITVPAVFSLSREVNVEDFLEYVRQQLQ*

mRNA from alignment at NODE_676_length_19860_cov_4.402802:1154..2023-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1687.t1 ID=Gcaud1687.t1|Name=Gcaud1687.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=870bp|location=Sequence derived from alignment at NODE_676_length_19860_cov_4.402802:1154..2023- (Gracilaria caudata M_176_S67 male)
ATGCCCTCAAACGATGCTGCCTTTCTGGGAGTACCACTACCCGCATATGC
CGCCACACGCAAACAACCTCAATCATTTAAGCGACCTCAGATTGTTAGAA
CTTCACTGTTTCCTTCCCGAAGAGCTAAGAAGGTCAATATCACACGCATC
TGCATCGAACTAAATGCCGCGTCAAATGTCCGTTGCAGTGCCTCGCAGTG
GGAATCTCTTACACCTGAGTCTTTCGACCACAAGCTAGAATCGAACAGCC
TTCAATTGTGTCTTGTTGGTATGTCAAACTGCGGCAAATCACATTGGTCT
ACGCAGCTGTACAAACACAAAAGCTTCCATCTAATCTGCGTTGATGACCA
AATCGAAGAACAAATTACCCCAGAACTCCAACAACTTGGATACTCCGGCA
TTGATGGTATGGCGAAGTGGATGGGATTTCCAAGCGATCAGCGTTTTGCG
ACAAATCAAGGTCGGTACCTTGTGCACGAAGAGCGTATCACATCGCGTGC
AGTACCAAACTCGGATGGAAGCACTGTTTTGGATACGACGGGAAGCGTGG
TGTATCTTTCGGACAAGACATTAGGTCAGTTGCGAGCGGATTACCTCGTG
ATTCATCTAGAAGCGAATGATGGCATGCTGGAAATGATGACAGACAACTA
CTTTAAAACTCCAAAACCTGTGGTATGGGGAGATGCGTTTAATTGTAAGG
AGCACGAGACGCCAATAGAGGCGATGAGGCGATGTTATCCAGGCTTGCTC
AGGCAAAGGAGGGAACGATACGCGGAACTGGCACACATCACAGTGCCAGC
TGTGTTCTCTCTCTCGAGAGAAGTTAATGTTGAAGACTTCCTCGAATACG
TGCGCCAGCAACTGCAATGA

Coding sequence (CDS) from alignment at NODE_676_length_19860_cov_4.402802:1154..2023-

>Gcaud1687.t1 ID=Gcaud1687.t1|Name=Gcaud1687.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=870bp|location=Sequence derived from alignment at NODE_676_length_19860_cov_4.402802:1154..2023- (Gracilaria caudata M_176_S67 male)
ATGCCCTCAAACGATGCTGCCTTTCTGGGAGTACCACTACCCGCATATGC
CGCCACACGCAAACAACCTCAATCATTTAAGCGACCTCAGATTGTTAGAA
CTTCACTGTTTCCTTCCCGAAGAGCTAAGAAGGTCAATATCACACGCATC
TGCATCGAACTAAATGCCGCGTCAAATGTCCGTTGCAGTGCCTCGCAGTG
GGAATCTCTTACACCTGAGTCTTTCGACCACAAGCTAGAATCGAACAGCC
TTCAATTGTGTCTTGTTGGTATGTCAAACTGCGGCAAATCACATTGGTCT
ACGCAGCTGTACAAACACAAAAGCTTCCATCTAATCTGCGTTGATGACCA
AATCGAAGAACAAATTACCCCAGAACTCCAACAACTTGGATACTCCGGCA
TTGATGGTATGGCGAAGTGGATGGGATTTCCAAGCGATCAGCGTTTTGCG
ACAAATCAAGGTCGGTACCTTGTGCACGAAGAGCGTATCACATCGCGTGC
AGTACCAAACTCGGATGGAAGCACTGTTTTGGATACGACGGGAAGCGTGG
TGTATCTTTCGGACAAGACATTAGGTCAGTTGCGAGCGGATTACCTCGTG
ATTCATCTAGAAGCGAATGATGGCATGCTGGAAATGATGACAGACAACTA
CTTTAAAACTCCAAAACCTGTGGTATGGGGAGATGCGTTTAATTGTAAGG
AGCACGAGACGCCAATAGAGGCGATGAGGCGATGTTATCCAGGCTTGCTC
AGGCAAAGGAGGGAACGATACGCGGAACTGGCACACATCACAGTGCCAGC
TGTGTTCTCTCTCTCGAGAGAAGTTAATGTTGAAGACTTCCTCGAATACG
TGCGCCAGCAACTGCAATGA