Gcaud1666.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1666.t1
Unique NameGcaud1666.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length363
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_866_length_16874_cov_4.313174contigNODE_866_length_16874_cov_4.313174:6559..7647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1666Gcaud1666Gracilaria caudata M_176_S67 malegeneNODE_866_length_16874_cov_4.313174 6559..8694 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1666.t1.stop1Gcaud1666.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_866_length_16874_cov_4.313174 6559..6561 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1666.t1.CDS1Gcaud1666.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_866_length_16874_cov_4.313174 6559..7647 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1666.t1.exon1Gcaud1666.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_866_length_16874_cov_4.313174 6559..7647 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1666.t1.start1Gcaud1666.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_866_length_16874_cov_4.313174 7645..7647 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1666.t1Gcaud1666.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_866_length_16874_cov_4.313174 6559..7647 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1666.t1 ID=Gcaud1666.t1|Name=Gcaud1666.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=363bp
LHLISDTDALDVSKRAIRLILKRYGVELLPKSLSLHFYKQLIDKLAHASQ
YANVVFSLRGGCVSRLLAHAQIKQATSPGTTQYIFPPDSYIGWRIQEVWH
FPTPECSCKFFSPFLAVEEEITSIWYEAENPMQTSTLLSESRYANNVSSA
LRLFDKLSVHKNVSAQVSRWSASRNESDTPRMMFASIACHSDPSSLTAQQ
RQSVRAQLRATSPTQTLLDVLEGLQSKPMQCLLDSPFLQRAELEKYVQSG
HRQPAFDMFTDPAFLEMARKWSPGFLPQPHPHAARRAESLYGAMYFNEAW
PASTNDLGGSLVPLEHRKLVSKLATRVAALFTGCVSTPFRYLDVYPELAV
IIASFVCSGMCV*
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spliced messenger RNA

>Gcaud1666.t1 ID=Gcaud1666.t1|Name=Gcaud1666.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1089bp|location=Sequence derived from alignment at NODE_866_length_16874_cov_4.313174:6559..7647- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCATCTAATTTCGGATACCGATGCCTTGGATGTGTCCAAGCGAGCCAT
TCGACTCATACTCAAGAGGTATGGCGTCGAATTACTGCCCAAGAGCTTAT
CGCTCCACTTCTACAAACAGCTTATTGATAAGCTCGCCCATGCTTCGCAG
TACGCCAATGTTGTCTTTTCTCTTCGCGGTGGCTGTGTTTCTCGTCTTCT
AGCGCATGCGCAAATCAAACAAGCCACTTCTCCTGGCACCACTCAATATA
TTTTTCCACCGGACTCATATATCGGCTGGCGAATACAAGAAGTGTGGCAT
TTTCCAACCCCAGAATGCTCCTGCAAATTCTTCTCCCCGTTTTTGGCGGT
AGAGGAGGAAATAACTTCCATATGGTATGAGGCGGAGAATCCGATGCAGA
CATCGACGCTTTTATCTGAGTCTCGATACGCGAATAATGTGTCTTCTGCC
CTGCGTTTGTTCGACAAGCTTTCTGTACACAAGAATGTTTCTGCGCAGGT
TTCACGTTGGTCCGCGTCGCGCAATGAATCTGATACACCACGGATGATGT
TTGCAAGCATTGCGTGCCATTCTGATCCATCGAGTCTCACCGCACAGCAG
AGGCAGTCTGTGAGAGCGCAGCTGCGAGCCACTTCGCCCACTCAGACCCT
GTTGGATGTATTGGAAGGCTTGCAGTCTAAGCCAATGCAATGCTTGCTAG
ACTCCCCTTTTTTGCAACGCGCAGAGTTGGAGAAGTACGTTCAGTCAGGC
CATCGGCAGCCGGCTTTTGATATGTTCACCGATCCTGCATTCTTAGAAAT
GGCCAGGAAATGGAGTCCAGGCTTTTTGCCACAGCCGCACCCGCACGCTG
CGAGAAGAGCTGAATCGCTGTATGGTGCTATGTACTTCAACGAGGCATGG
CCAGCGTCAACAAACGATTTGGGCGGTTCCTTGGTCCCGTTAGAACATAG
AAAACTGGTTTCCAAGTTGGCAACCCGTGTTGCCGCCTTGTTTACTGGAT
GTGTATCAACTCCTTTTCGATATCTCGATGTTTATCCGGAACTAGCAGTT
ATCATTGCCAGCTTTGTTTGTTCCGGGATGTGTGTCTGA
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protein sequence of Gcaud1666.t1

>Gcaud1666.t1 ID=Gcaud1666.t1|Name=Gcaud1666.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=363bp
LHLISDTDALDVSKRAIRLILKRYGVELLPKSLSLHFYKQLIDKLAHASQ
YANVVFSLRGGCVSRLLAHAQIKQATSPGTTQYIFPPDSYIGWRIQEVWH
FPTPECSCKFFSPFLAVEEEITSIWYEAENPMQTSTLLSESRYANNVSSA
LRLFDKLSVHKNVSAQVSRWSASRNESDTPRMMFASIACHSDPSSLTAQQ
RQSVRAQLRATSPTQTLLDVLEGLQSKPMQCLLDSPFLQRAELEKYVQSG
HRQPAFDMFTDPAFLEMARKWSPGFLPQPHPHAARRAESLYGAMYFNEAW
PASTNDLGGSLVPLEHRKLVSKLATRVAALFTGCVSTPFRYLDVYPELAV
IIASFVCSGMCV*
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mRNA from alignment at NODE_866_length_16874_cov_4.313174:6559..7647-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1666.t1 ID=Gcaud1666.t1|Name=Gcaud1666.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1089bp|location=Sequence derived from alignment at NODE_866_length_16874_cov_4.313174:6559..7647- (Gracilaria caudata M_176_S67 male)
TTGCATCTAATTTCGGATACCGATGCCTTGGATGTGTCCAAGCGAGCCAT
TCGACTCATACTCAAGAGGTATGGCGTCGAATTACTGCCCAAGAGCTTAT
CGCTCCACTTCTACAAACAGCTTATTGATAAGCTCGCCCATGCTTCGCAG
TACGCCAATGTTGTCTTTTCTCTTCGCGGTGGCTGTGTTTCTCGTCTTCT
AGCGCATGCGCAAATCAAACAAGCCACTTCTCCTGGCACCACTCAATATA
TTTTTCCACCGGACTCATATATCGGCTGGCGAATACAAGAAGTGTGGCAT
TTTCCAACCCCAGAATGCTCCTGCAAATTCTTCTCCCCGTTTTTGGCGGT
AGAGGAGGAAATAACTTCCATATGGTATGAGGCGGAGAATCCGATGCAGA
CATCGACGCTTTTATCTGAGTCTCGATACGCGAATAATGTGTCTTCTGCC
CTGCGTTTGTTCGACAAGCTTTCTGTACACAAGAATGTTTCTGCGCAGGT
TTCACGTTGGTCCGCGTCGCGCAATGAATCTGATACACCACGGATGATGT
TTGCAAGCATTGCGTGCCATTCTGATCCATCGAGTCTCACCGCACAGCAG
AGGCAGTCTGTGAGAGCGCAGCTGCGAGCCACTTCGCCCACTCAGACCCT
GTTGGATGTATTGGAAGGCTTGCAGTCTAAGCCAATGCAATGCTTGCTAG
ACTCCCCTTTTTTGCAACGCGCAGAGTTGGAGAAGTACGTTCAGTCAGGC
CATCGGCAGCCGGCTTTTGATATGTTCACCGATCCTGCATTCTTAGAAAT
GGCCAGGAAATGGAGTCCAGGCTTTTTGCCACAGCCGCACCCGCACGCTG
CGAGAAGAGCTGAATCGCTGTATGGTGCTATGTACTTCAACGAGGCATGG
CCAGCGTCAACAAACGATTTGGGCGGTTCCTTGGTCCCGTTAGAACATAG
AAAACTGGTTTCCAAGTTGGCAACCCGTGTTGCCGCCTTGTTTACTGGAT
GTGTATCAACTCCTTTTCGATATCTCGATGTTTATCCGGAACTAGCAGTT
ATCATTGCCAGCTTTGTTTGTTCCGGGATGTGTGTCTGA
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Coding sequence (CDS) from alignment at NODE_866_length_16874_cov_4.313174:6559..7647-

>Gcaud1666.t1 ID=Gcaud1666.t1|Name=Gcaud1666.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1089bp|location=Sequence derived from alignment at NODE_866_length_16874_cov_4.313174:6559..7647- (Gracilaria caudata M_176_S67 male)
TTGCATCTAATTTCGGATACCGATGCCTTGGATGTGTCCAAGCGAGCCAT
TCGACTCATACTCAAGAGGTATGGCGTCGAATTACTGCCCAAGAGCTTAT
CGCTCCACTTCTACAAACAGCTTATTGATAAGCTCGCCCATGCTTCGCAG
TACGCCAATGTTGTCTTTTCTCTTCGCGGTGGCTGTGTTTCTCGTCTTCT
AGCGCATGCGCAAATCAAACAAGCCACTTCTCCTGGCACCACTCAATATA
TTTTTCCACCGGACTCATATATCGGCTGGCGAATACAAGAAGTGTGGCAT
TTTCCAACCCCAGAATGCTCCTGCAAATTCTTCTCCCCGTTTTTGGCGGT
AGAGGAGGAAATAACTTCCATATGGTATGAGGCGGAGAATCCGATGCAGA
CATCGACGCTTTTATCTGAGTCTCGATACGCGAATAATGTGTCTTCTGCC
CTGCGTTTGTTCGACAAGCTTTCTGTACACAAGAATGTTTCTGCGCAGGT
TTCACGTTGGTCCGCGTCGCGCAATGAATCTGATACACCACGGATGATGT
TTGCAAGCATTGCGTGCCATTCTGATCCATCGAGTCTCACCGCACAGCAG
AGGCAGTCTGTGAGAGCGCAGCTGCGAGCCACTTCGCCCACTCAGACCCT
GTTGGATGTATTGGAAGGCTTGCAGTCTAAGCCAATGCAATGCTTGCTAG
ACTCCCCTTTTTTGCAACGCGCAGAGTTGGAGAAGTACGTTCAGTCAGGC
CATCGGCAGCCGGCTTTTGATATGTTCACCGATCCTGCATTCTTAGAAAT
GGCCAGGAAATGGAGTCCAGGCTTTTTGCCACAGCCGCACCCGCACGCTG
CGAGAAGAGCTGAATCGCTGTATGGTGCTATGTACTTCAACGAGGCATGG
CCAGCGTCAACAAACGATTTGGGCGGTTCCTTGGTCCCGTTAGAACATAG
AAAACTGGTTTCCAAGTTGGCAACCCGTGTTGCCGCCTTGTTTACTGGAT
GTGTATCAACTCCTTTTCGATATCTCGATGTTTATCCGGAACTAGCAGTT
ATCATTGCCAGCTTTGTTTGTTCCGGGATGTGTGTCTGA
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