Gcaud1657.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1657.t1
Unique Name	Gcaud1657.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	353

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_34_length_72082_cov_4.421108	contig	NODE_34_length_72082_cov_4.421108:54762..55820 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1657	Gcaud1657	Gracilaria caudata M_176_S67 male	gene	NODE_34_length_72082_cov_4.421108 54762..55820 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1657.t1.start1	Gcaud1657.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_34_length_72082_cov_4.421108 54762..54764 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1657.t1.CDS1	Gcaud1657.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_34_length_72082_cov_4.421108 54762..55820 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1657.t1.exon1	Gcaud1657.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_34_length_72082_cov_4.421108 54762..55820 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1657.t1.stop1	Gcaud1657.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_34_length_72082_cov_4.421108 55818..55820 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1657.t1	Gcaud1657.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_34_length_72082_cov_4.421108 54762..55820 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_34_length_72082_cov_4.421108:54762..55820+
coding sequence from alignment at NODE_34_length_72082_cov_4.421108:54762..55820+

mRNA sequence

>Gcaud1657.t1 ID=Gcaud1657.t1|Name=Gcaud1657.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=353bp
MAGVSPRQRSFAVSTVLLSRDPLHDAKSQPNLSLSPSTSTASPPRARPNG
TEQTNEPRLTALNRAQKLCAVKYGAGSTWVSDAYVLAHNAIKRQLISLYD
IVDSIASRAHLIQDMELDQFATWWATFDAFVTEYFDFEADVLLNWANADA
RVMAELKDACLEQIRQICGTFELRRYVDATDLFFTVVREVDAMVPKLLHY
FSALHAHLSPLIRATHAPKDVVALTRLYVTYIKKGDNPHVHLVLLTRWMD
ARMKEKWIRTYIRGLSRLLYRRWERHTLRSHVSIVAAFRKRAMKEARKTA
ASRIRRRTEFGEDVDEISFGSIPSHAGSIRSLNITKSKLRKNASRSTGRL
GA*

spliced messenger RNA

>Gcaud1657.t1 ID=Gcaud1657.t1|Name=Gcaud1657.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:54762..55820+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGGTGTCTCGCCGAGGCAGCGTTCGTTCGCTGTTTCCACTGTGTT
GCTGTCTAGGGACCCCTTACACGACGCCAAGAGTCAGCCCAACCTCTCCT
TGTCGCCCTCCACATCTACCGCTTCGCCGCCGCGCGCGCGTCCCAACGGC
ACTGAGCAGACAAATGAGCCGCGTCTCACCGCGCTCAATCGTGCTCAGAA
GCTGTGCGCCGTCAAGTACGGCGCAGGCAGCACGTGGGTGAGCGACGCCT
ATGTGTTGGCTCACAACGCTATCAAACGTCAGCTGATATCGCTTTACGAC
ATTGTTGACAGCATTGCGTCGCGCGCACATCTCATCCAGGATATGGAGCT
GGACCAGTTTGCTACGTGGTGGGCAACCTTTGACGCCTTTGTCACCGAGT
ACTTTGATTTTGAGGCCGATGTGTTGCTCAACTGGGCGAACGCCGATGCT
CGAGTCATGGCCGAGTTGAAGGATGCTTGTCTGGAACAAATCCGACAGAT
TTGTGGCACCTTTGAGTTGCGTCGGTACGTCGATGCTACCGACTTGTTTT
TCACCGTTGTTCGCGAAGTGGATGCCATGGTGCCCAAGTTGCTTCACTAC
TTTTCAGCGTTGCATGCGCATCTCTCACCGCTTATCCGTGCCACACACGC
TCCGAAGGACGTTGTGGCACTCACCAGGTTGTACGTGACGTATATCAAGA
AGGGCGACAATCCGCACGTTCATCTTGTGTTGTTGACGCGCTGGATGGAT
GCACGCATGAAAGAAAAATGGATCCGAACGTACATTCGTGGATTGTCTCG
TCTGTTGTATCGTCGATGGGAACGACATACTTTGCGATCTCATGTTTCTA
TTGTCGCTGCTTTTAGAAAACGGGCCATGAAGGAAGCCAGAAAAACTGCG
GCCAGCCGAATCAGACGGCGTACCGAATTTGGAGAAGATGTGGACGAGAT
TAGCTTTGGATCTATTCCAAGTCACGCTGGTAGCATTCGGTCGCTCAATA
TCACAAAGTCGAAATTGAGAAAGAACGCCAGTCGTTCAACAGGTCGATTG
GGAGCATGA

protein sequence of Gcaud1657.t1

>Gcaud1657.t1 ID=Gcaud1657.t1|Name=Gcaud1657.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=353bp
MAGVSPRQRSFAVSTVLLSRDPLHDAKSQPNLSLSPSTSTASPPRARPNG
TEQTNEPRLTALNRAQKLCAVKYGAGSTWVSDAYVLAHNAIKRQLISLYD
IVDSIASRAHLIQDMELDQFATWWATFDAFVTEYFDFEADVLLNWANADA
RVMAELKDACLEQIRQICGTFELRRYVDATDLFFTVVREVDAMVPKLLHY
FSALHAHLSPLIRATHAPKDVVALTRLYVTYIKKGDNPHVHLVLLTRWMD
ARMKEKWIRTYIRGLSRLLYRRWERHTLRSHVSIVAAFRKRAMKEARKTA
ASRIRRRTEFGEDVDEISFGSIPSHAGSIRSLNITKSKLRKNASRSTGRL
GA*

mRNA from alignment at NODE_34_length_72082_cov_4.421108:54762..55820+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1657.t1 ID=Gcaud1657.t1|Name=Gcaud1657.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:54762..55820+ (Gracilaria caudata M_176_S67 male)
ATGGCGGGTGTCTCGCCGAGGCAGCGTTCGTTCGCTGTTTCCACTGTGTT
GCTGTCTAGGGACCCCTTACACGACGCCAAGAGTCAGCCCAACCTCTCCT
TGTCGCCCTCCACATCTACCGCTTCGCCGCCGCGCGCGCGTCCCAACGGC
ACTGAGCAGACAAATGAGCCGCGTCTCACCGCGCTCAATCGTGCTCAGAA
GCTGTGCGCCGTCAAGTACGGCGCAGGCAGCACGTGGGTGAGCGACGCCT
ATGTGTTGGCTCACAACGCTATCAAACGTCAGCTGATATCGCTTTACGAC
ATTGTTGACAGCATTGCGTCGCGCGCACATCTCATCCAGGATATGGAGCT
GGACCAGTTTGCTACGTGGTGGGCAACCTTTGACGCCTTTGTCACCGAGT
ACTTTGATTTTGAGGCCGATGTGTTGCTCAACTGGGCGAACGCCGATGCT
CGAGTCATGGCCGAGTTGAAGGATGCTTGTCTGGAACAAATCCGACAGAT
TTGTGGCACCTTTGAGTTGCGTCGGTACGTCGATGCTACCGACTTGTTTT
TCACCGTTGTTCGCGAAGTGGATGCCATGGTGCCCAAGTTGCTTCACTAC
TTTTCAGCGTTGCATGCGCATCTCTCACCGCTTATCCGTGCCACACACGC
TCCGAAGGACGTTGTGGCACTCACCAGGTTGTACGTGACGTATATCAAGA
AGGGCGACAATCCGCACGTTCATCTTGTGTTGTTGACGCGCTGGATGGAT
GCACGCATGAAAGAAAAATGGATCCGAACGTACATTCGTGGATTGTCTCG
TCTGTTGTATCGTCGATGGGAACGACATACTTTGCGATCTCATGTTTCTA
TTGTCGCTGCTTTTAGAAAACGGGCCATGAAGGAAGCCAGAAAAACTGCG
GCCAGCCGAATCAGACGGCGTACCGAATTTGGAGAAGATGTGGACGAGAT
TAGCTTTGGATCTATTCCAAGTCACGCTGGTAGCATTCGGTCGCTCAATA
TCACAAAGTCGAAATTGAGAAAGAACGCCAGTCGTTCAACAGGTCGATTG
GGAGCATGA

Coding sequence (CDS) from alignment at NODE_34_length_72082_cov_4.421108:54762..55820+

>Gcaud1657.t1 ID=Gcaud1657.t1|Name=Gcaud1657.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1059bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:54762..55820+ (Gracilaria caudata M_176_S67 male)
ATGGCGGGTGTCTCGCCGAGGCAGCGTTCGTTCGCTGTTTCCACTGTGTT
GCTGTCTAGGGACCCCTTACACGACGCCAAGAGTCAGCCCAACCTCTCCT
TGTCGCCCTCCACATCTACCGCTTCGCCGCCGCGCGCGCGTCCCAACGGC
ACTGAGCAGACAAATGAGCCGCGTCTCACCGCGCTCAATCGTGCTCAGAA
GCTGTGCGCCGTCAAGTACGGCGCAGGCAGCACGTGGGTGAGCGACGCCT
ATGTGTTGGCTCACAACGCTATCAAACGTCAGCTGATATCGCTTTACGAC
ATTGTTGACAGCATTGCGTCGCGCGCACATCTCATCCAGGATATGGAGCT
GGACCAGTTTGCTACGTGGTGGGCAACCTTTGACGCCTTTGTCACCGAGT
ACTTTGATTTTGAGGCCGATGTGTTGCTCAACTGGGCGAACGCCGATGCT
CGAGTCATGGCCGAGTTGAAGGATGCTTGTCTGGAACAAATCCGACAGAT
TTGTGGCACCTTTGAGTTGCGTCGGTACGTCGATGCTACCGACTTGTTTT
TCACCGTTGTTCGCGAAGTGGATGCCATGGTGCCCAAGTTGCTTCACTAC
TTTTCAGCGTTGCATGCGCATCTCTCACCGCTTATCCGTGCCACACACGC
TCCGAAGGACGTTGTGGCACTCACCAGGTTGTACGTGACGTATATCAAGA
AGGGCGACAATCCGCACGTTCATCTTGTGTTGTTGACGCGCTGGATGGAT
GCACGCATGAAAGAAAAATGGATCCGAACGTACATTCGTGGATTGTCTCG
TCTGTTGTATCGTCGATGGGAACGACATACTTTGCGATCTCATGTTTCTA
TTGTCGCTGCTTTTAGAAAACGGGCCATGAAGGAAGCCAGAAAAACTGCG
GCCAGCCGAATCAGACGGCGTACCGAATTTGGAGAAGATGTGGACGAGAT
TAGCTTTGGATCTATTCCAAGTCACGCTGGTAGCATTCGGTCGCTCAATA
TCACAAAGTCGAAATTGAGAAAGAACGCCAGTCGTTCAACAGGTCGATTG
GGAGCATGA