Gcaud1651.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1651.t1
Unique Name	Gcaud1651.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	502

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_34_length_72082_cov_4.421108	contig	NODE_34_length_72082_cov_4.421108:33252..35012 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1279017.AQYJ01000029_gene3385
PFAMs	HemolysinCabind,PAP2
Max annot lvl	1224\|Proteobacteria
Evalue	1.38e-30
EggNOG OGs	COG2931@1\|root,COG2931@2\|Bacteria,1QX4P@1224\|Proteobacteria
Description	calcium- and calmodulin-responsive adenylate cyclase activity
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1651	Gcaud1651	Gracilaria caudata M_176_S67 male	gene	NODE_34_length_72082_cov_4.421108 33252..35012 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1651.t1	Gcaud1651.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_34_length_72082_cov_4.421108 33252..35012 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1651.t1.start1	Gcaud1651.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_34_length_72082_cov_4.421108 33252..33254 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1651.t1.CDS1	Gcaud1651.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_34_length_72082_cov_4.421108 33252..33859 +
Gcaud1651.t1.CDS2	Gcaud1651.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_34_length_72082_cov_4.421108 34115..35012 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1651.t1.exon1	Gcaud1651.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_34_length_72082_cov_4.421108 33252..33859 +
Gcaud1651.t1.exon2	Gcaud1651.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_34_length_72082_cov_4.421108 34115..35012 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1651.t1.intron1	Gcaud1651.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_34_length_72082_cov_4.421108 33860..34114 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1651.t1.stop1	Gcaud1651.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_34_length_72082_cov_4.421108 35010..35012 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_34_length_72082_cov_4.421108:33252..35012+
coding sequence from alignment at NODE_34_length_72082_cov_4.421108:33252..35012+

mRNA sequence

>Gcaud1651.t1 ID=Gcaud1651.t1|Name=Gcaud1651.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=502bp
MSDTLSEFEDMFSKDPCESNLVQLVHILLEEAEYFPAHAPRGIMLSERAI
KSYDNLEVKAHLGEFFYYNGTQEQRKRALSLIEDAMVKEPLPCRLRLLSR
CLTQGICIKKDIKRAANLLERSVRQYNCVWSMVDLATMWLEFPQFSVDKK
TALGLFHQAMELSADPSIRRHLSQLYRTGTPLLDASDELADKWWQKGQEG
FPCVSVDNRGLFASQQHVVPQIGTNGKPLALSREQFEQRRAPPLYETPNR
RNTLGRRDRKLARGLVRDLFKRAANVTEEKVLISYMWENKFFSLGLFAGY
YQELLGLGDDIMVPLFFAEMLAQHDATLVAWKEKSRHDYVRPVTFIRKLF
HGKKVRAWKGLEEGVGLVNANEWEPVVPIQPHSEYPSGSAVICTASLENL
QIFLETLVLEDSNAVPLFEMDIVPGLVPNSPVEKTIKVVFNTLEEAALSC
GESRLDSGVHFEPSVPVGHNLGTGIGKAAFAHVMDLIQGRVPENCERCLR
N*

spliced messenger RNA

>Gcaud1651.t1 ID=Gcaud1651.t1|Name=Gcaud1651.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1506bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:33252..35012+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGACACTCTATCTGAGTTTGAAGATATGTTCTCGAAAGACCCGTG
CGAATCGAATTTAGTACAGCTTGTCCACATTCTCCTGGAAGAAGCAGAAT
ATTTTCCTGCACACGCGCCGCGAGGTATCATGCTCTCTGAAAGAGCAATC
AAAAGCTACGACAACCTGGAAGTAAAAGCTCACCTCGGAGAGTTTTTTTA
CTACAACGGCACGCAGGAGCAACGCAAACGAGCGTTGTCGTTAATTGAAG
ACGCAATGGTGAAAGAACCATTACCGTGTCGCCTTCGACTACTTTCTCGC
TGTTTGACGCAAGGTATTTGTATCAAGAAGGATATCAAAAGAGCTGCAAA
TTTACTGGAAAGATCAGTGAGACAGTACAACTGCGTGTGGTCTATGGTGG
ATCTTGCTACAATGTGGCTGGAGTTTCCACAGTTTAGCGTTGATAAAAAG
ACGGCTCTTGGCTTGTTCCATCAAGCCATGGAACTATCTGCGGATCCGTC
CATTCGACGCCATTTGTCGCAGCTCTACCGTACAGGCACGCCGTTGCTAG
ATGCTTCGGACGAACTCGCGGATAAGTGGTGGCAGAAAGGACAAGAAGGT
TTCCCATGTGTATCGGTTGATAACCGTGGCTTGTTCGCGAGTCAGCAGCA
CGTCGTCCCGCAGATTGGTACCAACGGTAAGCCACTAGCTTTATCCCGTG
AGCAATTTGAGCAGCGTCGCGCTCCGCCTCTTTACGAAACCCCCAATCGT
CGTAACACGCTTGGTCGCAGGGATCGAAAGTTAGCCCGTGGCCTGGTGCG
GGATCTGTTTAAACGTGCTGCAAATGTAACTGAGGAAAAGGTGCTGATCT
CGTACATGTGGGAGAACAAGTTTTTTTCGCTTGGGTTGTTTGCTGGGTAC
TATCAAGAATTGCTCGGACTTGGGGATGATATTATGGTGCCGCTGTTCTT
TGCTGAAATGCTTGCTCAGCACGATGCTACATTAGTAGCGTGGAAGGAAA
AGAGCCGTCATGATTATGTTCGTCCCGTCACTTTTATAAGAAAACTGTTT
CACGGGAAAAAGGTGCGTGCGTGGAAGGGACTGGAGGAAGGTGTGGGACT
CGTCAACGCCAACGAATGGGAACCCGTTGTACCCATTCAACCGCACTCTG
AATATCCATCCGGGTCAGCTGTGATCTGTACAGCGTCACTGGAGAATCTG
CAAATCTTTCTTGAGACTCTTGTTTTAGAGGATAGTAATGCTGTCCCTCT
GTTTGAAATGGATATTGTTCCGGGGCTTGTTCCGAACAGTCCGGTTGAGA
AGACTATTAAGGTGGTGTTCAATACATTGGAAGAGGCTGCGCTGAGTTGC
GGAGAATCCCGGCTCGACTCTGGTGTGCATTTCGAACCGTCCGTGCCTGT
TGGACATAATTTGGGCACAGGTATTGGGAAAGCAGCGTTTGCTCATGTAA
TGGATCTTATCCAAGGCAGGGTACCGGAAAACTGTGAGCGCTGTTTGAGG
AACTAG

protein sequence of Gcaud1651.t1

>Gcaud1651.t1 ID=Gcaud1651.t1|Name=Gcaud1651.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=502bp
MSDTLSEFEDMFSKDPCESNLVQLVHILLEEAEYFPAHAPRGIMLSERAI
KSYDNLEVKAHLGEFFYYNGTQEQRKRALSLIEDAMVKEPLPCRLRLLSR
CLTQGICIKKDIKRAANLLERSVRQYNCVWSMVDLATMWLEFPQFSVDKK
TALGLFHQAMELSADPSIRRHLSQLYRTGTPLLDASDELADKWWQKGQEG
FPCVSVDNRGLFASQQHVVPQIGTNGKPLALSREQFEQRRAPPLYETPNR
RNTLGRRDRKLARGLVRDLFKRAANVTEEKVLISYMWENKFFSLGLFAGY
YQELLGLGDDIMVPLFFAEMLAQHDATLVAWKEKSRHDYVRPVTFIRKLF
HGKKVRAWKGLEEGVGLVNANEWEPVVPIQPHSEYPSGSAVICTASLENL
QIFLETLVLEDSNAVPLFEMDIVPGLVPNSPVEKTIKVVFNTLEEAALSC
GESRLDSGVHFEPSVPVGHNLGTGIGKAAFAHVMDLIQGRVPENCERCLR
N*

mRNA from alignment at NODE_34_length_72082_cov_4.421108:33252..35012+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1651.t1 ID=Gcaud1651.t1|Name=Gcaud1651.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1761bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:33252..35012+ (Gracilaria caudata M_176_S67 male)
ATGTCTGACACTCTATCTGAGTTTGAAGATATGTTCTCGAAAGACCCGTG
CGAATCGAATTTAGTACAGCTTGTCCACATTCTCCTGGAAGAAGCAGAAT
ATTTTCCTGCACACGCGCCGCGAGGTATCATGCTCTCTGAAAGAGCAATC
AAAAGCTACGACAACCTGGAAGTAAAAGCTCACCTCGGAGAGTTTTTTTA
CTACAACGGCACGCAGGAGCAACGCAAACGAGCGTTGTCGTTAATTGAAG
ACGCAATGGTGAAAGAACCATTACCGTGTCGCCTTCGACTACTTTCTCGC
TGTTTGACGCAAGGTATTTGTATCAAGAAGGATATCAAAAGAGCTGCAAA
TTTACTGGAAAGATCAGTGAGACAGTACAACTGCGTGTGGTCTATGGTGG
ATCTTGCTACAATGTGGCTGGAGTTTCCACAGTTTAGCGTTGATAAAAAG
ACGGCTCTTGGCTTGTTCCATCAAGCCATGGAACTATCTGCGGATCCGTC
CATTCGACGCCATTTGTCGCAGCTCTACCGTACAGGCACGCCGTTGCTAG
ATGCTTCGGACGAACTCGCGGATAAGTGGTGGCAGAAAGGACAAGAAGGT
TTCCCATGGTCAGAAAGTGTTGTTTACTAAGTTTTCACTGGATTGTAAGT
TGATTACTACATCTTTATTAGAACACCCTGTTAAAATGTTGTTTCCAATC
GTTTAATTCAATACTTTGCCAATGACGGATGGAACTCTCAAGGAGATCTT
TCGAAGCGCGATTATCGTCAGCAATACCAAGACTATACTTTCTATGCTCC
AATCAATGCGCCGAACGTCGAACCGTATCATGTTGAGTTCTCTCTTCGTT
GGCAACCACTCAGTGTATCGGTTGATAACCGTGGCTTGTTCGCGAGTCAG
CAGCACGTCGTCCCGCAGATTGGTACCAACGGTAAGCCACTAGCTTTATC
CCGTGAGCAATTTGAGCAGCGTCGCGCTCCGCCTCTTTACGAAACCCCCA
ATCGTCGTAACACGCTTGGTCGCAGGGATCGAAAGTTAGCCCGTGGCCTG
GTGCGGGATCTGTTTAAACGTGCTGCAAATGTAACTGAGGAAAAGGTGCT
GATCTCGTACATGTGGGAGAACAAGTTTTTTTCGCTTGGGTTGTTTGCTG
GGTACTATCAAGAATTGCTCGGACTTGGGGATGATATTATGGTGCCGCTG
TTCTTTGCTGAAATGCTTGCTCAGCACGATGCTACATTAGTAGCGTGGAA
GGAAAAGAGCCGTCATGATTATGTTCGTCCCGTCACTTTTATAAGAAAAC
TGTTTCACGGGAAAAAGGTGCGTGCGTGGAAGGGACTGGAGGAAGGTGTG
GGACTCGTCAACGCCAACGAATGGGAACCCGTTGTACCCATTCAACCGCA
CTCTGAATATCCATCCGGGTCAGCTGTGATCTGTACAGCGTCACTGGAGA
ATCTGCAAATCTTTCTTGAGACTCTTGTTTTAGAGGATAGTAATGCTGTC
CCTCTGTTTGAAATGGATATTGTTCCGGGGCTTGTTCCGAACAGTCCGGT
TGAGAAGACTATTAAGGTGGTGTTCAATACATTGGAAGAGGCTGCGCTGA
GTTGCGGAGAATCCCGGCTCGACTCTGGTGTGCATTTCGAACCGTCCGTG
CCTGTTGGACATAATTTGGGCACAGGTATTGGGAAAGCAGCGTTTGCTCA
TGTAATGGATCTTATCCAAGGCAGGGTACCGGAAAACTGTGAGCGCTGTT
TGAGGAACTAG

Coding sequence (CDS) from alignment at NODE_34_length_72082_cov_4.421108:33252..35012+

>Gcaud1651.t1 ID=Gcaud1651.t1|Name=Gcaud1651.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1506bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:33252..35012+ (Gracilaria caudata M_176_S67 male)
ATGTCTGACACTCTATCTGAGTTTGAAGATATGTTCTCGAAAGACCCGTG
CGAATCGAATTTAGTACAGCTTGTCCACATTCTCCTGGAAGAAGCAGAAT
ATTTTCCTGCACACGCGCCGCGAGGTATCATGCTCTCTGAAAGAGCAATC
AAAAGCTACGACAACCTGGAAGTAAAAGCTCACCTCGGAGAGTTTTTTTA
CTACAACGGCACGCAGGAGCAACGCAAACGAGCGTTGTCGTTAATTGAAG
ACGCAATGGTGAAAGAACCATTACCGTGTCGCCTTCGACTACTTTCTCGC
TGTTTGACGCAAGGTATTTGTATCAAGAAGGATATCAAAAGAGCTGCAAA
TTTACTGGAAAGATCAGTGAGACAGTACAACTGCGTGTGGTCTATGGTGG
ATCTTGCTACAATGTGGCTGGAGTTTCCACAGTTTAGCGTTGATAAAAAG
ACGGCTCTTGGCTTGTTCCATCAAGCCATGGAACTATCTGCGGATCCGTC
CATTCGACGCCATTTGTCGCAGCTCTACCGTACAGGCACGCCGTTGCTAG
ATGCTTCGGACGAACTCGCGGATAAGTGGTGGCAGAAAGGACAAGAAGGT
TTCCCATGTGTATCGGTTGATAACCGTGGCTTGTTCGCGAGTCAGCAGCA
CGTCGTCCCGCAGATTGGTACCAACGGTAAGCCACTAGCTTTATCCCGTG
AGCAATTTGAGCAGCGTCGCGCTCCGCCTCTTTACGAAACCCCCAATCGT
CGTAACACGCTTGGTCGCAGGGATCGAAAGTTAGCCCGTGGCCTGGTGCG
GGATCTGTTTAAACGTGCTGCAAATGTAACTGAGGAAAAGGTGCTGATCT
CGTACATGTGGGAGAACAAGTTTTTTTCGCTTGGGTTGTTTGCTGGGTAC
TATCAAGAATTGCTCGGACTTGGGGATGATATTATGGTGCCGCTGTTCTT
TGCTGAAATGCTTGCTCAGCACGATGCTACATTAGTAGCGTGGAAGGAAA
AGAGCCGTCATGATTATGTTCGTCCCGTCACTTTTATAAGAAAACTGTTT
CACGGGAAAAAGGTGCGTGCGTGGAAGGGACTGGAGGAAGGTGTGGGACT
CGTCAACGCCAACGAATGGGAACCCGTTGTACCCATTCAACCGCACTCTG
AATATCCATCCGGGTCAGCTGTGATCTGTACAGCGTCACTGGAGAATCTG
CAAATCTTTCTTGAGACTCTTGTTTTAGAGGATAGTAATGCTGTCCCTCT
GTTTGAAATGGATATTGTTCCGGGGCTTGTTCCGAACAGTCCGGTTGAGA
AGACTATTAAGGTGGTGTTCAATACATTGGAAGAGGCTGCGCTGAGTTGC
GGAGAATCCCGGCTCGACTCTGGTGTGCATTTCGAACCGTCCGTGCCTGT
TGGACATAATTTGGGCACAGGTATTGGGAAAGCAGCGTTTGCTCATGTAA
TGGATCTTATCCAAGGCAGGGTACCGGAAAACTGTGAGCGCTGTTTGAGG
AACTAG