Gcaud1599.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1599.t1
Unique NameGcaud1599.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length171
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2600_length_5190_cov_3.487154contigNODE_2600_length_5190_cov_3.487154:2207..2719 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1122222.AXWR01000007_gene389
PFAMsPribosyltran
Max annot lvl1297|Deinococcus-Thermus
KEGG koko:K07101
Evalue8.71e-45
EggNOG OGsCOG2236@1|root,COG2236@2|Bacteria,1WJRW@1297|Deinococcus-Thermus
DescriptionPhosphoribosyl transferase domain
COG categoryF
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1599Gcaud1599Gracilaria caudata M_176_S67 malegeneNODE_2600_length_5190_cov_3.487154 2207..2719 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1599.t1.start1Gcaud1599.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2600_length_5190_cov_3.487154 2207..2209 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1599.t1.CDS1Gcaud1599.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2600_length_5190_cov_3.487154 2207..2719 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1599.t1.exon1Gcaud1599.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2600_length_5190_cov_3.487154 2207..2719 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1599.t1.stop1Gcaud1599.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2600_length_5190_cov_3.487154 2717..2719 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1599.t1Gcaud1599.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2600_length_5190_cov_3.487154 2207..2719 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1599.t1 ID=Gcaud1599.t1|Name=Gcaud1599.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=171bp
MCKRIAQQARSQRFDVILAVTRGGLVPAVLLCEAFELRNILSATVMFYAD
NGEQFFGMTEPRFLAFPSVDALQGRRVLIVDDVWDSGRTAQAVRNRVKRA
NAKDVKVAVLHYKPDKNVFPGVQPDFYSAVTADWIVYPWERPSPHTPHVS
VEADEAAAAQESADNSPKLT*
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spliced messenger RNA

>Gcaud1599.t1 ID=Gcaud1599.t1|Name=Gcaud1599.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=513bp|location=Sequence derived from alignment at NODE_2600_length_5190_cov_3.487154:2207..2719+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCAAGCGCATTGCGCAACAGGCGCGCAGCCAGCGCTTCGATGTGAT
CCTGGCCGTCACAAGAGGCGGTCTCGTGCCGGCCGTGTTGCTGTGCGAGG
CGTTTGAGCTGCGCAACATCCTGTCTGCTACTGTCATGTTCTACGCGGAC
AATGGCGAGCAGTTCTTCGGCATGACTGAACCCAGATTTCTGGCGTTTCC
GAGCGTGGATGCGCTGCAGGGACGACGCGTGCTCATTGTGGATGACGTTT
GGGATAGCGGACGCACGGCACAGGCTGTGCGAAATCGCGTGAAGCGCGCG
AATGCAAAGGACGTCAAGGTGGCCGTTTTGCATTACAAGCCCGACAAGAA
CGTGTTTCCGGGCGTTCAACCCGATTTCTACTCGGCCGTCACGGCCGATT
GGATCGTGTATCCGTGGGAAAGACCCAGTCCGCACACCCCGCACGTGAGC
GTTGAGGCGGATGAAGCGGCGGCCGCGCAGGAATCGGCGGACAATTCGCC
AAAACTAACGTGA
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protein sequence of Gcaud1599.t1

>Gcaud1599.t1 ID=Gcaud1599.t1|Name=Gcaud1599.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=171bp
MCKRIAQQARSQRFDVILAVTRGGLVPAVLLCEAFELRNILSATVMFYAD
NGEQFFGMTEPRFLAFPSVDALQGRRVLIVDDVWDSGRTAQAVRNRVKRA
NAKDVKVAVLHYKPDKNVFPGVQPDFYSAVTADWIVYPWERPSPHTPHVS
VEADEAAAAQESADNSPKLT*
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mRNA from alignment at NODE_2600_length_5190_cov_3.487154:2207..2719+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1599.t1 ID=Gcaud1599.t1|Name=Gcaud1599.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=513bp|location=Sequence derived from alignment at NODE_2600_length_5190_cov_3.487154:2207..2719+ (Gracilaria caudata M_176_S67 male)
ATGTGCAAGCGCATTGCGCAACAGGCGCGCAGCCAGCGCTTCGATGTGAT
CCTGGCCGTCACAAGAGGCGGTCTCGTGCCGGCCGTGTTGCTGTGCGAGG
CGTTTGAGCTGCGCAACATCCTGTCTGCTACTGTCATGTTCTACGCGGAC
AATGGCGAGCAGTTCTTCGGCATGACTGAACCCAGATTTCTGGCGTTTCC
GAGCGTGGATGCGCTGCAGGGACGACGCGTGCTCATTGTGGATGACGTTT
GGGATAGCGGACGCACGGCACAGGCTGTGCGAAATCGCGTGAAGCGCGCG
AATGCAAAGGACGTCAAGGTGGCCGTTTTGCATTACAAGCCCGACAAGAA
CGTGTTTCCGGGCGTTCAACCCGATTTCTACTCGGCCGTCACGGCCGATT
GGATCGTGTATCCGTGGGAAAGACCCAGTCCGCACACCCCGCACGTGAGC
GTTGAGGCGGATGAAGCGGCGGCCGCGCAGGAATCGGCGGACAATTCGCC
AAAACTAACGTGA
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Coding sequence (CDS) from alignment at NODE_2600_length_5190_cov_3.487154:2207..2719+

>Gcaud1599.t1 ID=Gcaud1599.t1|Name=Gcaud1599.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=513bp|location=Sequence derived from alignment at NODE_2600_length_5190_cov_3.487154:2207..2719+ (Gracilaria caudata M_176_S67 male)
ATGTGCAAGCGCATTGCGCAACAGGCGCGCAGCCAGCGCTTCGATGTGAT
CCTGGCCGTCACAAGAGGCGGTCTCGTGCCGGCCGTGTTGCTGTGCGAGG
CGTTTGAGCTGCGCAACATCCTGTCTGCTACTGTCATGTTCTACGCGGAC
AATGGCGAGCAGTTCTTCGGCATGACTGAACCCAGATTTCTGGCGTTTCC
GAGCGTGGATGCGCTGCAGGGACGACGCGTGCTCATTGTGGATGACGTTT
GGGATAGCGGACGCACGGCACAGGCTGTGCGAAATCGCGTGAAGCGCGCG
AATGCAAAGGACGTCAAGGTGGCCGTTTTGCATTACAAGCCCGACAAGAA
CGTGTTTCCGGGCGTTCAACCCGATTTCTACTCGGCCGTCACGGCCGATT
GGATCGTGTATCCGTGGGAAAGACCCAGTCCGCACACCCCGCACGTGAGC
GTTGAGGCGGATGAAGCGGCGGCCGCGCAGGAATCGGCGGACAATTCGCC
AAAACTAACGTGA
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