Gcaud1594.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1594.t1
Unique NameGcaud1594.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length155
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_949_length_15845_cov_6.769582contigNODE_949_length_15845_cov_6.769582:15306..15770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708406.1
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K13303
KEGG Pathwayko04068,ko04151,map04068,map04151
Evalue2.1e-06
EggNOG OGsCOG0515@1|root,KOG0690@2759|Eukaryota
EC2.7.11.1
Descriptionglycogen cell differentiation involved in embryonic placenta development
COG categoryKLT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1594Gcaud1594Gracilaria caudata M_176_S67 malegeneNODE_949_length_15845_cov_6.769582 15306..15770 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1594.t1.stop1Gcaud1594.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_949_length_15845_cov_6.769582 15306..15308 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1594.t1.CDS1Gcaud1594.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_949_length_15845_cov_6.769582 15306..15770 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1594.t1.exon1Gcaud1594.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_949_length_15845_cov_6.769582 15306..15770 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1594.t1.start1Gcaud1594.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_949_length_15845_cov_6.769582 15768..15770 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1594.t1Gcaud1594.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_949_length_15845_cov_6.769582 15306..15770 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1594.t1 ID=Gcaud1594.t1|Name=Gcaud1594.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=155bp
MPFETGSRSRQEILEDQRKAEIPFNGLSDEGYSLVCALLRPNPLRRPTCE
DLKQYPIFAGINWDELMRKGPHPNSVKDVMDKISLEARSREKEGPTTENV
GGESDMYLLRNFDPDEPLLVVAWKAMLLKNIEVIACALCAEDQVAQIVAP
FVSE*
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spliced messenger RNA

>Gcaud1594.t1 ID=Gcaud1594.t1|Name=Gcaud1594.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=465bp|location=Sequence derived from alignment at NODE_949_length_15845_cov_6.769582:15306..15770- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTTTGAGACAGGAAGTAGAAGTAGACAGGAAATCTTGGAAGACCA
ACGAAAGGCTGAGATTCCTTTCAATGGTCTGTCCGATGAAGGCTACTCTC
TGGTTTGTGCGCTACTGCGTCCCAATCCTCTTCGACGTCCGACATGCGAA
GACCTGAAGCAATACCCAATTTTCGCGGGTATCAACTGGGACGAGTTGAT
GCGCAAGGGACCGCACCCTAACTCAGTGAAGGACGTAATGGATAAGATAT
CTCTGGAAGCTAGGAGTCGGGAGAAGGAGGGGCCAACGACAGAAAACGTT
GGCGGTGAGAGTGATATGTACTTGTTGCGCAACTTTGACCCCGATGAACC
GCTTCTGGTCGTAGCGTGGAAAGCGATGTTACTGAAGAATATTGAGGTCA
TTGCATGCGCGCTCTGTGCTGAAGATCAAGTTGCACAGATCGTGGCGCCT
TTTGTCTCAGAATAA
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protein sequence of Gcaud1594.t1

>Gcaud1594.t1 ID=Gcaud1594.t1|Name=Gcaud1594.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=155bp
MPFETGSRSRQEILEDQRKAEIPFNGLSDEGYSLVCALLRPNPLRRPTCE
DLKQYPIFAGINWDELMRKGPHPNSVKDVMDKISLEARSREKEGPTTENV
GGESDMYLLRNFDPDEPLLVVAWKAMLLKNIEVIACALCAEDQVAQIVAP
FVSE*
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mRNA from alignment at NODE_949_length_15845_cov_6.769582:15306..15770-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1594.t1 ID=Gcaud1594.t1|Name=Gcaud1594.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=465bp|location=Sequence derived from alignment at NODE_949_length_15845_cov_6.769582:15306..15770- (Gracilaria caudata M_176_S67 male)
ATGCCGTTTGAGACAGGAAGTAGAAGTAGACAGGAAATCTTGGAAGACCA
ACGAAAGGCTGAGATTCCTTTCAATGGTCTGTCCGATGAAGGCTACTCTC
TGGTTTGTGCGCTACTGCGTCCCAATCCTCTTCGACGTCCGACATGCGAA
GACCTGAAGCAATACCCAATTTTCGCGGGTATCAACTGGGACGAGTTGAT
GCGCAAGGGACCGCACCCTAACTCAGTGAAGGACGTAATGGATAAGATAT
CTCTGGAAGCTAGGAGTCGGGAGAAGGAGGGGCCAACGACAGAAAACGTT
GGCGGTGAGAGTGATATGTACTTGTTGCGCAACTTTGACCCCGATGAACC
GCTTCTGGTCGTAGCGTGGAAAGCGATGTTACTGAAGAATATTGAGGTCA
TTGCATGCGCGCTCTGTGCTGAAGATCAAGTTGCACAGATCGTGGCGCCT
TTTGTCTCAGAATAA
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Coding sequence (CDS) from alignment at NODE_949_length_15845_cov_6.769582:15306..15770-

>Gcaud1594.t1 ID=Gcaud1594.t1|Name=Gcaud1594.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=465bp|location=Sequence derived from alignment at NODE_949_length_15845_cov_6.769582:15306..15770- (Gracilaria caudata M_176_S67 male)
ATGCCGTTTGAGACAGGAAGTAGAAGTAGACAGGAAATCTTGGAAGACCA
ACGAAAGGCTGAGATTCCTTTCAATGGTCTGTCCGATGAAGGCTACTCTC
TGGTTTGTGCGCTACTGCGTCCCAATCCTCTTCGACGTCCGACATGCGAA
GACCTGAAGCAATACCCAATTTTCGCGGGTATCAACTGGGACGAGTTGAT
GCGCAAGGGACCGCACCCTAACTCAGTGAAGGACGTAATGGATAAGATAT
CTCTGGAAGCTAGGAGTCGGGAGAAGGAGGGGCCAACGACAGAAAACGTT
GGCGGTGAGAGTGATATGTACTTGTTGCGCAACTTTGACCCCGATGAACC
GCTTCTGGTCGTAGCGTGGAAAGCGATGTTACTGAAGAATATTGAGGTCA
TTGCATGCGCGCTCTGTGCTGAAGATCAAGTTGCACAGATCGTGGCGCCT
TTTGTCTCAGAATAA
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