Gcaud1593.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1593.t1
Unique Name	Gcaud1593.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	235

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_949_length_15845_cov_6.769582	contig	NODE_949_length_15845_cov_6.769582:12807..13984 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1593	Gcaud1593	Gracilaria caudata M_176_S67 male	gene	NODE_949_length_15845_cov_6.769582 12807..13984 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1593.t1	Gcaud1593.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_949_length_15845_cov_6.769582 12807..13984 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1593.t1.start1	Gcaud1593.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_949_length_15845_cov_6.769582 12807..12809 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1593.t1.CDS1	Gcaud1593.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_949_length_15845_cov_6.769582 12807..13109 +
Gcaud1593.t1.CDS2	Gcaud1593.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_949_length_15845_cov_6.769582 13583..13984 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1593.t1.exon1	Gcaud1593.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_949_length_15845_cov_6.769582 12807..13109 +
Gcaud1593.t1.exon2	Gcaud1593.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_949_length_15845_cov_6.769582 13583..13984 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1593.t1.intron1	Gcaud1593.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_949_length_15845_cov_6.769582 13110..13582 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1593.t1.stop1	Gcaud1593.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_949_length_15845_cov_6.769582 13982..13984 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_949_length_15845_cov_6.769582:12807..13984+
coding sequence from alignment at NODE_949_length_15845_cov_6.769582:12807..13984+

mRNA sequence

>Gcaud1593.t1 ID=Gcaud1593.t1|Name=Gcaud1593.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=235bp
MFAETRLLVKQLEVIEPPDFDEEAFPKVCPRQFLNNYYNGFCFAFRRVMG
KVNTDCSEAMEYLRLLIRGHPSGALMESILEKDFMHYSAFAFYVNDEITT
EPDFSTCLDSEQIPYEIDTAMDLDCLPIPDIPVERTQVETLLEHSEGTKL
LRMATIATCFEVLDIKNEAMTVYLVLEQLRHDLVHISSRAFARDHAFHVR
VSTDSIGMLSVSFSMREGDQAPKAIMKGKGGSDA*

spliced messenger RNA

>Gcaud1593.t1 ID=Gcaud1593.t1|Name=Gcaud1593.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=705bp|location=Sequence derived from alignment at NODE_949_length_15845_cov_6.769582:12807..13984+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGCCGAAACTCGTTTGTTGGTGAAACAGCTAGAAGTTATAGAACC
TCCAGATTTTGATGAGGAGGCCTTTCCCAAAGTTTGTCCGCGCCAATTTC
TCAACAACTACTACAACGGATTTTGTTTTGCGTTTCGTCGCGTGATGGGA
AAAGTGAATACAGATTGTTCAGAAGCGATGGAATATCTCAGATTGCTTAT
TCGGGGTCATCCATCTGGTGCATTGATGGAATCAATACTGGAGAAAGATT
TCATGCATTATTCAGCCTTCGCATTCTACGTTAACGATGAGATTACAACA
GAGCCGGACTTTTCTACCTGCCTAGATTCGGAGCAGATTCCGTATGAAAT
CGACACGGCCATGGACCTCGATTGTCTCCCTATCCCTGATATCCCCGTTG
AACGTACGCAAGTAGAAACCCTGCTCGAGCACTCTGAAGGCACAAAGTTG
TTGCGTATGGCAACAATTGCAACGTGCTTCGAGGTATTAGACATCAAGAA
CGAAGCCATGACTGTCTACTTGGTGCTCGAACAGCTCCGACATGACCTGG
TACACATCTCGTCACGTGCATTTGCGAGGGATCACGCATTTCATGTGAGA
GTGAGCACAGACAGCATTGGCATGCTGTCCGTATCGTTCAGCATGAGAGA
GGGAGACCAAGCTCCAAAAGCCATAATGAAGGGAAAAGGCGGATCAGACG
CCTAG

protein sequence of Gcaud1593.t1

>Gcaud1593.t1 ID=Gcaud1593.t1|Name=Gcaud1593.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=235bp
MFAETRLLVKQLEVIEPPDFDEEAFPKVCPRQFLNNYYNGFCFAFRRVMG
KVNTDCSEAMEYLRLLIRGHPSGALMESILEKDFMHYSAFAFYVNDEITT
EPDFSTCLDSEQIPYEIDTAMDLDCLPIPDIPVERTQVETLLEHSEGTKL
LRMATIATCFEVLDIKNEAMTVYLVLEQLRHDLVHISSRAFARDHAFHVR
VSTDSIGMLSVSFSMREGDQAPKAIMKGKGGSDA*

mRNA from alignment at NODE_949_length_15845_cov_6.769582:12807..13984+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1593.t1 ID=Gcaud1593.t1|Name=Gcaud1593.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1178bp|location=Sequence derived from alignment at NODE_949_length_15845_cov_6.769582:12807..13984+ (Gracilaria caudata M_176_S67 male)
ATGTTTGCCGAAACTCGTTTGTTGGTGAAACAGCTAGAAGTTATAGAACC
TCCAGATTTTGATGAGGAGGCCTTTCCCAAAGTTTGTCCGCGCCAATTTC
TCAACAACTACTACAACGGATTTTGTTTTGCGTTTCGTCGCGTGATGGGA
AAAGTGAATACAGATTGTTCAGAAGCGATGGAATATCTCAGATTGCTTAT
TCGGGGTCATCCATCTGGTGCATTGATGGAATCAATACTGGAGAAAGATT
TCATGCATTATTCAGCCTTCGCATTCTACGTTAACGATGAGATTACAACA
GAGGTATTTCGTTGACTTTTGTTGGCTTCTATCTATTAAGAAGCGCACAT
ACAAATTTCAAAGATGTAGCAAAGACCTTTCCGTTTATTGTAAAAAAACC
TCTGTAGCTCCGAATCAGAAGTTGCTGTTTTTGATTCTGCACTGGCGCAA
AAACTGCCGATTTTGATTCTTCCGATATTCGGAAATCGGGGgaaaccgtt
ggtttctgaccgtagatagaagcaaaagcggtttgttttagtcgcaaatg
ttgctctagcCAATCTAAAAACACTTCTTCCGATGCGAAGTGGCGTTGTA
AGTTTGCTTTGCAAGATTAAAGGTAGTAGACTCAAATTTCTGTTGATGGG
TGTTGCGGTTTGATTGAGTCGTAAATGTTGCTCTAGCCAGTTCATCCGTT
CTTGCAAAGAGGTAATGTCATCATCACGTTGTTGCAAACGGGACTTGAGG
GCGACCACTATGGCGCCCTAGTATAGCCGGACTTTTCTACCTGCCTAGAT
TCGGAGCAGATTCCGTATGAAATCGACACGGCCATGGACCTCGATTGTCT
CCCTATCCCTGATATCCCCGTTGAACGTACGCAAGTAGAAACCCTGCTCG
AGCACTCTGAAGGCACAAAGTTGTTGCGTATGGCAACAATTGCAACGTGC
TTCGAGGTATTAGACATCAAGAACGAAGCCATGACTGTCTACTTGGTGCT
CGAACAGCTCCGACATGACCTGGTACACATCTCGTCACGTGCATTTGCGA
GGGATCACGCATTTCATGTGAGAGTGAGCACAGACAGCATTGGCATGCTG
TCCGTATCGTTCAGCATGAGAGAGGGAGACCAAGCTCCAAAAGCCATAAT
GAAGGGAAAAGGCGGATCAGACGCCTAG

Coding sequence (CDS) from alignment at NODE_949_length_15845_cov_6.769582:12807..13984+

>Gcaud1593.t1 ID=Gcaud1593.t1|Name=Gcaud1593.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=705bp|location=Sequence derived from alignment at NODE_949_length_15845_cov_6.769582:12807..13984+ (Gracilaria caudata M_176_S67 male)
ATGTTTGCCGAAACTCGTTTGTTGGTGAAACAGCTAGAAGTTATAGAACC
TCCAGATTTTGATGAGGAGGCCTTTCCCAAAGTTTGTCCGCGCCAATTTC
TCAACAACTACTACAACGGATTTTGTTTTGCGTTTCGTCGCGTGATGGGA
AAAGTGAATACAGATTGTTCAGAAGCGATGGAATATCTCAGATTGCTTAT
TCGGGGTCATCCATCTGGTGCATTGATGGAATCAATACTGGAGAAAGATT
TCATGCATTATTCAGCCTTCGCATTCTACGTTAACGATGAGATTACAACA
GAGCCGGACTTTTCTACCTGCCTAGATTCGGAGCAGATTCCGTATGAAAT
CGACACGGCCATGGACCTCGATTGTCTCCCTATCCCTGATATCCCCGTTG
AACGTACGCAAGTAGAAACCCTGCTCGAGCACTCTGAAGGCACAAAGTTG
TTGCGTATGGCAACAATTGCAACGTGCTTCGAGGTATTAGACATCAAGAA
CGAAGCCATGACTGTCTACTTGGTGCTCGAACAGCTCCGACATGACCTGG
TACACATCTCGTCACGTGCATTTGCGAGGGATCACGCATTTCATGTGAGA
GTGAGCACAGACAGCATTGGCATGCTGTCCGTATCGTTCAGCATGAGAGA
GGGAGACCAAGCTCCAAAAGCCATAATGAAGGGAAAAGGCGGATCAGACG
CCTAG