Gcaud1589.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1589.t1
Unique Name	Gcaud1589.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	435

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1145_length_13323_cov_4.126436	contig	NODE_1145_length_13323_cov_4.126436:11781..13085 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704002.1
Preferred name	EIF5
PFAMs	W2,eIF-5_eIF-2B
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03262,ko:K10683
KEGG Pathway	ko03013,ko03440,ko04214,map03013,map03440,map04214
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue	1.28e-71
EggNOG OGs	COG1601@1\|root,KOG2767@2759\|Eukaryota
Description	translation initiation factor activity
COG category	J
BRITE	ko00000,ko00001,ko03012,ko03019,ko03036,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1589	Gcaud1589	Gracilaria caudata M_176_S67 male	gene	NODE_1145_length_13323_cov_4.126436 11781..13085 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1589.t1.stop1	Gcaud1589.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1145_length_13323_cov_4.126436 11781..11783 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1589.t1.CDS1	Gcaud1589.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1145_length_13323_cov_4.126436 11781..13085 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1589.t1.exon1	Gcaud1589.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1145_length_13323_cov_4.126436 11781..13085 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1589.t1.start1	Gcaud1589.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1145_length_13323_cov_4.126436 13083..13085 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1589.t1	Gcaud1589.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1145_length_13323_cov_4.126436 11781..13085 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1145_length_13323_cov_4.126436:11781..13085-
coding sequence from alignment at NODE_1145_length_13323_cov_4.126436:11781..13085-

mRNA sequence

>Gcaud1589.t1 ID=Gcaud1589.t1|Name=Gcaud1589.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=435bp
MDSVNIAGGDDQFNRYKMPPVIGKVEGRGNGIKTRIVNCVEVARALHRPP
GYVCKFFGCELCAQTKINDADGVYIVNGSFSQSVLADTLQKFIKMFVLCQ
SCTLPETDLKVKRNGDITQLCNACGAERACDMTHKLCTYIVNNPPDGRKK
KVDGKKDKAARRAAKARKAAGDAPHRDDERGRKKGSKKGSRKGAHAAAAA
ADGVDAGGAPAPAPGEMQFSAADFEFSAGGDDGADDDVQWSVDTSKEAQE
ARQRELGAAAAILDRSPVEDEWNKVRKLRAYIDDGKRASKVVTKAEKLFG
VDGTIQGIVKAAVVDEALSAMLHSVSERAMDVLKEIGKPMPVEAQDAFLD
YFEWAAVHDERVMPMFPHILKLSYDEGLVEEEVIVGWFKKERVRADVKES
VRVIVEWLQNAEEEEDSEEEEEEGESESEEESDA*

spliced messenger RNA

>Gcaud1589.t1 ID=Gcaud1589.t1|Name=Gcaud1589.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at NODE_1145_length_13323_cov_4.126436:11781..13085- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATAGCGTCAACATTGCCGGCGGCGATGACCAGTTCAACCGCTACAA
GATGCCGCCCGTCATCGGCAAGGTGGAGGGCCGCGGCAACGGCATCAAGA
CGCGCATCGTCAACTGCGTGGAGGTGGCGCGCGCGCTGCACCGCCCGCCC
GGCTACGTGTGCAAGTTCTTCGGCTGCGAGCTGTGCGCGCAGACCAAGAT
CAACGACGCGGACGGCGTGTACATTGTGAACGGCTCGTTCAGTCAGTCCG
TGCTGGCCGACACGCTGCAAAAGTTCATCAAGATGTTTGTGTTGTGTCAG
AGTTGCACGCTGCCGGAGACCGACCTCAAGGTGAAGAGGAACGGCGACAT
CACGCAGCTGTGCAACGCGTGCGGCGCGGAGCGCGCGTGCGACATGACGC
ACAAGTTGTGCACGTACATTGTGAACAACCCGCCGGATGGAAGGAAGAAG
AAGGTGGACGGCAAGAAGGACAAGGCGGCGCGACGCGCCGCCAAGGCGCG
CAAGGCGGCGGGTGACGCGCCGCACCGCGACGACGAGCGTGGCAGGAAGA
AGGGCTCCAAGAAGGGCTCCAGGAAGGGCGCGCACGCCGCCGCCGCCGCG
GCCGACGGCGTCGACGCCGGCGGCGCGCCCGCGCCCGCGCCGGGCGAGAT
GCAGTTCTCCGCGGCCGACTTTGAGTTCTCGGCGGGCGGCGACGACGGCG
CGGACGACGACGTGCAGTGGAGCGTGGACACGTCCAAGGAGGCGCAGGAG
GCAAGGCAGAGGGAGCTGGGCGCGGCGGCGGCCATCCTGGACAGGTCGCC
CGTGGAGGACGAGTGGAACAAGGTGCGCAAGCTGCGCGCGTACATCGACG
ACGGCAAGCGCGCCAGCAAGGTGGTCACCAAGGCGGAGAAGCTGTTCGGC
GTGGACGGCACCATCCAGGGCATTGTGAAGGCGGCGGTGGTGGACGAGGC
GCTGTCGGCCATGCTGCATAGCGTGTCGGAGCGCGCCATGGACGTGCTCA
AGGAGATTGGCAAGCCGATGCCGGTGGAGGCGCAGGACGCGTTTCTGGAC
TACTTTGAGTGGGCGGCGGTGCACGACGAGCGCGTGATGCCCATGTTCCC
GCACATCCTCAAGCTGAGCTACGACGAGGGGCTGGTGGAGGAGGAGGTGA
TCGTGGGCTGGTTCAAAAAGGAGCGCGTGCGCGCGGACGTGAAGGAGAGC
GTGCGCGTGATTGTGGAGTGGCTGCAGAACGCGGAGGAGGAGGAGGACAG
CGAGGAGGAGGAGGAGGAGGGCGAGAGCGAGAGCGAGGAGGAGAGCGATG
CGTGA

protein sequence of Gcaud1589.t1

>Gcaud1589.t1 ID=Gcaud1589.t1|Name=Gcaud1589.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=435bp
MDSVNIAGGDDQFNRYKMPPVIGKVEGRGNGIKTRIVNCVEVARALHRPP
GYVCKFFGCELCAQTKINDADGVYIVNGSFSQSVLADTLQKFIKMFVLCQ
SCTLPETDLKVKRNGDITQLCNACGAERACDMTHKLCTYIVNNPPDGRKK
KVDGKKDKAARRAAKARKAAGDAPHRDDERGRKKGSKKGSRKGAHAAAAA
ADGVDAGGAPAPAPGEMQFSAADFEFSAGGDDGADDDVQWSVDTSKEAQE
ARQRELGAAAAILDRSPVEDEWNKVRKLRAYIDDGKRASKVVTKAEKLFG
VDGTIQGIVKAAVVDEALSAMLHSVSERAMDVLKEIGKPMPVEAQDAFLD
YFEWAAVHDERVMPMFPHILKLSYDEGLVEEEVIVGWFKKERVRADVKES
VRVIVEWLQNAEEEEDSEEEEEEGESESEEESDA*

mRNA from alignment at NODE_1145_length_13323_cov_4.126436:11781..13085-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1589.t1 ID=Gcaud1589.t1|Name=Gcaud1589.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at NODE_1145_length_13323_cov_4.126436:11781..13085- (Gracilaria caudata M_176_S67 male)
ATGGATAGCGTCAACATTGCCGGCGGCGATGACCAGTTCAACCGCTACAA
GATGCCGCCCGTCATCGGCAAGGTGGAGGGCCGCGGCAACGGCATCAAGA
CGCGCATCGTCAACTGCGTGGAGGTGGCGCGCGCGCTGCACCGCCCGCCC
GGCTACGTGTGCAAGTTCTTCGGCTGCGAGCTGTGCGCGCAGACCAAGAT
CAACGACGCGGACGGCGTGTACATTGTGAACGGCTCGTTCAGTCAGTCCG
TGCTGGCCGACACGCTGCAAAAGTTCATCAAGATGTTTGTGTTGTGTCAG
AGTTGCACGCTGCCGGAGACCGACCTCAAGGTGAAGAGGAACGGCGACAT
CACGCAGCTGTGCAACGCGTGCGGCGCGGAGCGCGCGTGCGACATGACGC
ACAAGTTGTGCACGTACATTGTGAACAACCCGCCGGATGGAAGGAAGAAG
AAGGTGGACGGCAAGAAGGACAAGGCGGCGCGACGCGCCGCCAAGGCGCG
CAAGGCGGCGGGTGACGCGCCGCACCGCGACGACGAGCGTGGCAGGAAGA
AGGGCTCCAAGAAGGGCTCCAGGAAGGGCGCGCACGCCGCCGCCGCCGCG
GCCGACGGCGTCGACGCCGGCGGCGCGCCCGCGCCCGCGCCGGGCGAGAT
GCAGTTCTCCGCGGCCGACTTTGAGTTCTCGGCGGGCGGCGACGACGGCG
CGGACGACGACGTGCAGTGGAGCGTGGACACGTCCAAGGAGGCGCAGGAG
GCAAGGCAGAGGGAGCTGGGCGCGGCGGCGGCCATCCTGGACAGGTCGCC
CGTGGAGGACGAGTGGAACAAGGTGCGCAAGCTGCGCGCGTACATCGACG
ACGGCAAGCGCGCCAGCAAGGTGGTCACCAAGGCGGAGAAGCTGTTCGGC
GTGGACGGCACCATCCAGGGCATTGTGAAGGCGGCGGTGGTGGACGAGGC
GCTGTCGGCCATGCTGCATAGCGTGTCGGAGCGCGCCATGGACGTGCTCA
AGGAGATTGGCAAGCCGATGCCGGTGGAGGCGCAGGACGCGTTTCTGGAC
TACTTTGAGTGGGCGGCGGTGCACGACGAGCGCGTGATGCCCATGTTCCC
GCACATCCTCAAGCTGAGCTACGACGAGGGGCTGGTGGAGGAGGAGGTGA
TCGTGGGCTGGTTCAAAAAGGAGCGCGTGCGCGCGGACGTGAAGGAGAGC
GTGCGCGTGATTGTGGAGTGGCTGCAGAACGCGGAGGAGGAGGAGGACAG
CGAGGAGGAGGAGGAGGAGGGCGAGAGCGAGAGCGAGGAGGAGAGCGATG
CGTGA

Coding sequence (CDS) from alignment at NODE_1145_length_13323_cov_4.126436:11781..13085-

>Gcaud1589.t1 ID=Gcaud1589.t1|Name=Gcaud1589.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1305bp|location=Sequence derived from alignment at NODE_1145_length_13323_cov_4.126436:11781..13085- (Gracilaria caudata M_176_S67 male)
ATGGATAGCGTCAACATTGCCGGCGGCGATGACCAGTTCAACCGCTACAA
GATGCCGCCCGTCATCGGCAAGGTGGAGGGCCGCGGCAACGGCATCAAGA
CGCGCATCGTCAACTGCGTGGAGGTGGCGCGCGCGCTGCACCGCCCGCCC
GGCTACGTGTGCAAGTTCTTCGGCTGCGAGCTGTGCGCGCAGACCAAGAT
CAACGACGCGGACGGCGTGTACATTGTGAACGGCTCGTTCAGTCAGTCCG
TGCTGGCCGACACGCTGCAAAAGTTCATCAAGATGTTTGTGTTGTGTCAG
AGTTGCACGCTGCCGGAGACCGACCTCAAGGTGAAGAGGAACGGCGACAT
CACGCAGCTGTGCAACGCGTGCGGCGCGGAGCGCGCGTGCGACATGACGC
ACAAGTTGTGCACGTACATTGTGAACAACCCGCCGGATGGAAGGAAGAAG
AAGGTGGACGGCAAGAAGGACAAGGCGGCGCGACGCGCCGCCAAGGCGCG
CAAGGCGGCGGGTGACGCGCCGCACCGCGACGACGAGCGTGGCAGGAAGA
AGGGCTCCAAGAAGGGCTCCAGGAAGGGCGCGCACGCCGCCGCCGCCGCG
GCCGACGGCGTCGACGCCGGCGGCGCGCCCGCGCCCGCGCCGGGCGAGAT
GCAGTTCTCCGCGGCCGACTTTGAGTTCTCGGCGGGCGGCGACGACGGCG
CGGACGACGACGTGCAGTGGAGCGTGGACACGTCCAAGGAGGCGCAGGAG
GCAAGGCAGAGGGAGCTGGGCGCGGCGGCGGCCATCCTGGACAGGTCGCC
CGTGGAGGACGAGTGGAACAAGGTGCGCAAGCTGCGCGCGTACATCGACG
ACGGCAAGCGCGCCAGCAAGGTGGTCACCAAGGCGGAGAAGCTGTTCGGC
GTGGACGGCACCATCCAGGGCATTGTGAAGGCGGCGGTGGTGGACGAGGC
GCTGTCGGCCATGCTGCATAGCGTGTCGGAGCGCGCCATGGACGTGCTCA
AGGAGATTGGCAAGCCGATGCCGGTGGAGGCGCAGGACGCGTTTCTGGAC
TACTTTGAGTGGGCGGCGGTGCACGACGAGCGCGTGATGCCCATGTTCCC
GCACATCCTCAAGCTGAGCTACGACGAGGGGCTGGTGGAGGAGGAGGTGA
TCGTGGGCTGGTTCAAAAAGGAGCGCGTGCGCGCGGACGTGAAGGAGAGC
GTGCGCGTGATTGTGGAGTGGCTGCAGAACGCGGAGGAGGAGGAGGACAG
CGAGGAGGAGGAGGAGGAGGGCGAGAGCGAGAGCGAGGAGGAGAGCGATG
CGTGA