Gcaud1582.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1582.t1
Unique Name	Gcaud1582.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	649

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_993_length_15395_cov_3.930345	contig	NODE_993_length_15395_cov_3.930345:6757..8803 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72019.SARC_07461T0
PFAMs	ABC2_membrane,ABC_tran
Max annot lvl	33154\|Opisthokonta
Evalue	6.52e-166
EggNOG OGs	COG1131@1\|root,KOG0061@2759\|Eukaryota,38CVQ@33154\|Opisthokonta
Description	ATPase activity
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1582	Gcaud1582	Gracilaria caudata M_176_S67 male	gene	NODE_993_length_15395_cov_3.930345 6757..8803 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1582.t1	Gcaud1582.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_993_length_15395_cov_3.930345 6757..8803 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1582.t1.start1	Gcaud1582.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_993_length_15395_cov_3.930345 6757..6759 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1582.t1.CDS1	Gcaud1582.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_993_length_15395_cov_3.930345 6757..7074 +
Gcaud1582.t1.CDS2	Gcaud1582.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_993_length_15395_cov_3.930345 7175..8803 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1582.t1.exon1	Gcaud1582.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_993_length_15395_cov_3.930345 6757..7074 +
Gcaud1582.t1.exon2	Gcaud1582.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_993_length_15395_cov_3.930345 7175..8803 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1582.t1.intron1	Gcaud1582.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_993_length_15395_cov_3.930345 7075..7174 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1582.t1.stop1	Gcaud1582.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_993_length_15395_cov_3.930345 8801..8803 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_993_length_15395_cov_3.930345:6757..8803+
coding sequence from alignment at NODE_993_length_15395_cov_3.930345:6757..8803+

mRNA sequence

>Gcaud1582.t1 ID=Gcaud1582.t1|Name=Gcaud1582.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=649bp
MEHEHTFMSHQGRNIEFDALEANREFKQFSESVTSREDAIPVDLVWRNLT
FDVPAPKLKKGQKPVIEPASSDAELPFGVAPLKPNMRRILHAVSGQVRSG
QVLAIMGASGSGKTTMLNMLSGRLKSSKKCTTGGHVYVNGQSRNFNTFPH
IAKFVEQDDTTMFAELTVREQILFAARLALSNKVPEERKRARVEKIIQEL
GLSKCSDTYIGNELTRGVSGGERRRVAIGVELVTDPSLVFLDEPTTGLDS
FNALNVMSSLRHLARNGRTIITTIHQPRSSIFHLFDMLCLIAEGRTVYFG
PAADVAKYFDGLGFQCPPHFNVADYFIDVLSIDHRSEEREVKTVSRIEYV
SDQYRQNVEPAFLSNADAYQSAHAVQPGADVAKYGNGVFKEFTILVQRTS
KLMLRERQINFTRLGQTLVFGLLLGLIWLNSGRDSEQAAVEGVIFFIVVN
QCFDAAFGVIFAYPTERAIVNRERASGFYRDVSYFFGKQLCELPRAVFFN
MLLLLILYFMVGLNSGAGAFFVLLLITVVVSVAGEGMAQALSVFGGDEQT
AAAIVPVAVIFQLLFGGFFIQPDALPGYIAWVRWATFMYYAFNAAVLNEF
GADAGGSVEDFSLSKWEAISVLLGFAAGYKLIYFLALRLNKPRFDRSL*

spliced messenger RNA

>Gcaud1582.t1 ID=Gcaud1582.t1|Name=Gcaud1582.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1947bp|location=Sequence derived from alignment at NODE_993_length_15395_cov_3.930345:6757..8803+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCACGAGCACACCTTCATGAGCCACCAAGGAAGAAACATCGAGTT
TGATGCGCTTGAGGCCAATCGAGAGTTCAAGCAATTCTCGGAGAGTGTCA
CGTCGCGCGAAGATGCCATACCCGTCGACCTGGTATGGCGCAATCTCACT
TTCGACGTGCCGGCGCCCAAACTAAAAAAGGGACAGAAACCTGTCATTGA
ACCTGCGTCATCCGATGCAGAGCTGCCGTTTGGGGTAGCACCGCTCAAAC
CCAATATGCGACGCATTCTGCACGCCGTGAGCGGCCAGGTTCGCTCGGGA
CAAGTGCTGGCTATCATGGGGGCGTCGGGAAGCGGTAAGACTACGATGTT
GAATATGCTGTCTGGTCGACTCAAGTCTAGCAAGAAGTGCACTACAGGTG
GTCACGTTTATGTGAATGGACAGTCTCGCAACTTCAACACATTTCCACAC
ATTGCCAAATTTGTCGAGCAGGATGACACCACCATGTTTGCGGAGCTTAC
TGTTCGTGAACAAATCCTATTCGCCGCTCGACTGGCGCTGTCGAACAAGG
TTCCAGAGGAGCGAAAACGGGCGCGTGTGGAGAAAATCATTCAGGAGCTG
GGCCTTTCCAAGTGTAGCGACACGTACATTGGAAACGAACTCACGCGTGG
TGTGAGCGGCGGAGAGAGACGACGAGTTGCTATTGGCGTTGAACTTGTGA
CCGATCCTTCGCTTGTGTTTTTGGACGAGCCAACCACAGGACTTGACAGT
TTTAACGCGCTCAATGTGATGTCATCTCTACGTCATCTTGCACGCAATGG
TAGGACAATTATCACTACTATTCATCAACCAAGGTCGAGTATATTCCATT
TGTTTGACATGCTGTGTCTCATCGCGGAGGGGCGAACGGTGTATTTCGGT
CCTGCTGCAGATGTGGCCAAGTACTTTGATGGTCTTGGTTTCCAATGTCC
GCCACATTTCAACGTTGCGGATTATTTTATCGACGTTTTGTCCATCGACC
ATCGTTCAGAGGAACGGGAAGTAAAGACGGTATCGCGAATCGAATATGTT
TCGGATCAATATCGTCAAAACGTGGAGCCTGCGTTTTTGTCCAACGCCGA
TGCTTACCAGTCGGCACATGCGGTGCAACCGGGCGCGGACGTGGCCAAAT
ATGGAAACGGCGTTTTCAAGGAGTTTACCATTCTGGTTCAACGCACCAGT
AAGCTGATGCTTCGTGAGCGACAGATCAATTTCACGCGACTCGGACAGAC
GTTGGTCTTCGGGCTGTTACTGGGACTTATCTGGTTGAACTCTGGACGCG
ACTCGGAACAGGCGGCAGTTGAGGGTGTGATTTTCTTCATTGTGGTGAAT
CAGTGCTTCGATGCGGCATTCGGCGTGATCTTTGCGTATCCGACGGAACG
GGCAATCGTGAACCGCGAACGCGCAAGCGGTTTCTATCGTGATGTGTCGT
ACTTTTTCGGGAAACAACTGTGTGAACTTCCTCGTGCTGTGTTTTTCAAT
ATGCTGTTGTTATTGATTCTATACTTCATGGTAGGGTTGAACTCGGGCGC
GGGCGCATTCTTCGTGTTGTTGCTGATTACGGTGGTGGTGTCAGTAGCTG
GCGAGGGTATGGCACAAGCACTGAGCGTGTTTGGTGGCGATGAACAGACA
GCGGCGGCTATTGTACCGGTGGCAGTGATTTTCCAGCTGTTGTTTGGCGG
TTTCTTCATCCAGCCCGATGCGTTGCCCGGGTATATTGCGTGGGTGAGAT
GGGCGACGTTTATGTACTATGCGTTCAATGCGGCGGTGCTCAACGAGTTT
GGAGCGGATGCTGGGGGGAGCGTGGAGGATTTTAGTCTGAGTAAGTGGGA
GGCGATTTCGGTGTTACTTGGGTTTGCTGCGGGGTACAAACTGATCTACT
TCCTGGCACTGCGCCTAAACAAACCGCGCTTCGATCGCAGTCTGTAG

protein sequence of Gcaud1582.t1

>Gcaud1582.t1 ID=Gcaud1582.t1|Name=Gcaud1582.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=649bp
MEHEHTFMSHQGRNIEFDALEANREFKQFSESVTSREDAIPVDLVWRNLT
FDVPAPKLKKGQKPVIEPASSDAELPFGVAPLKPNMRRILHAVSGQVRSG
QVLAIMGASGSGKTTMLNMLSGRLKSSKKCTTGGHVYVNGQSRNFNTFPH
IAKFVEQDDTTMFAELTVREQILFAARLALSNKVPEERKRARVEKIIQEL
GLSKCSDTYIGNELTRGVSGGERRRVAIGVELVTDPSLVFLDEPTTGLDS
FNALNVMSSLRHLARNGRTIITTIHQPRSSIFHLFDMLCLIAEGRTVYFG
PAADVAKYFDGLGFQCPPHFNVADYFIDVLSIDHRSEEREVKTVSRIEYV
SDQYRQNVEPAFLSNADAYQSAHAVQPGADVAKYGNGVFKEFTILVQRTS
KLMLRERQINFTRLGQTLVFGLLLGLIWLNSGRDSEQAAVEGVIFFIVVN
QCFDAAFGVIFAYPTERAIVNRERASGFYRDVSYFFGKQLCELPRAVFFN
MLLLLILYFMVGLNSGAGAFFVLLLITVVVSVAGEGMAQALSVFGGDEQT
AAAIVPVAVIFQLLFGGFFIQPDALPGYIAWVRWATFMYYAFNAAVLNEF
GADAGGSVEDFSLSKWEAISVLLGFAAGYKLIYFLALRLNKPRFDRSL*

mRNA from alignment at NODE_993_length_15395_cov_3.930345:6757..8803+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1582.t1 ID=Gcaud1582.t1|Name=Gcaud1582.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2047bp|location=Sequence derived from alignment at NODE_993_length_15395_cov_3.930345:6757..8803+ (Gracilaria caudata M_176_S67 male)
ATGGAGCACGAGCACACCTTCATGAGCCACCAAGGAAGAAACATCGAGTT
TGATGCGCTTGAGGCCAATCGAGAGTTCAAGCAATTCTCGGAGAGTGTCA
CGTCGCGCGAAGATGCCATACCCGTCGACCTGGTATGGCGCAATCTCACT
TTCGACGTGCCGGCGCCCAAACTAAAAAAGGGACAGAAACCTGTCATTGA
ACCTGCGTCATCCGATGCAGAGCTGCCGTTTGGGGTAGCACCGCTCAAAC
CCAATATGCGACGCATTCTGCACGCCGTGAGCGGCCAGGTTCGCTCGGGA
CAAGTGCTGGCTATCATGGTAAGTTCTTTCTTGCGTTTCATTTGCACACA
CTGTTTCGTTCATTCATTTCTGCATGCTGAACAGTGTGTTCGTGCTTGTC
ACTTGTGTCTTTTTGTAGGGGGCGTCGGGAAGCGGTAAGACTACGATGTT
GAATATGCTGTCTGGTCGACTCAAGTCTAGCAAGAAGTGCACTACAGGTG
GTCACGTTTATGTGAATGGACAGTCTCGCAACTTCAACACATTTCCACAC
ATTGCCAAATTTGTCGAGCAGGATGACACCACCATGTTTGCGGAGCTTAC
TGTTCGTGAACAAATCCTATTCGCCGCTCGACTGGCGCTGTCGAACAAGG
TTCCAGAGGAGCGAAAACGGGCGCGTGTGGAGAAAATCATTCAGGAGCTG
GGCCTTTCCAAGTGTAGCGACACGTACATTGGAAACGAACTCACGCGTGG
TGTGAGCGGCGGAGAGAGACGACGAGTTGCTATTGGCGTTGAACTTGTGA
CCGATCCTTCGCTTGTGTTTTTGGACGAGCCAACCACAGGACTTGACAGT
TTTAACGCGCTCAATGTGATGTCATCTCTACGTCATCTTGCACGCAATGG
TAGGACAATTATCACTACTATTCATCAACCAAGGTCGAGTATATTCCATT
TGTTTGACATGCTGTGTCTCATCGCGGAGGGGCGAACGGTGTATTTCGGT
CCTGCTGCAGATGTGGCCAAGTACTTTGATGGTCTTGGTTTCCAATGTCC
GCCACATTTCAACGTTGCGGATTATTTTATCGACGTTTTGTCCATCGACC
ATCGTTCAGAGGAACGGGAAGTAAAGACGGTATCGCGAATCGAATATGTT
TCGGATCAATATCGTCAAAACGTGGAGCCTGCGTTTTTGTCCAACGCCGA
TGCTTACCAGTCGGCACATGCGGTGCAACCGGGCGCGGACGTGGCCAAAT
ATGGAAACGGCGTTTTCAAGGAGTTTACCATTCTGGTTCAACGCACCAGT
AAGCTGATGCTTCGTGAGCGACAGATCAATTTCACGCGACTCGGACAGAC
GTTGGTCTTCGGGCTGTTACTGGGACTTATCTGGTTGAACTCTGGACGCG
ACTCGGAACAGGCGGCAGTTGAGGGTGTGATTTTCTTCATTGTGGTGAAT
CAGTGCTTCGATGCGGCATTCGGCGTGATCTTTGCGTATCCGACGGAACG
GGCAATCGTGAACCGCGAACGCGCAAGCGGTTTCTATCGTGATGTGTCGT
ACTTTTTCGGGAAACAACTGTGTGAACTTCCTCGTGCTGTGTTTTTCAAT
ATGCTGTTGTTATTGATTCTATACTTCATGGTAGGGTTGAACTCGGGCGC
GGGCGCATTCTTCGTGTTGTTGCTGATTACGGTGGTGGTGTCAGTAGCTG
GCGAGGGTATGGCACAAGCACTGAGCGTGTTTGGTGGCGATGAACAGACA
GCGGCGGCTATTGTACCGGTGGCAGTGATTTTCCAGCTGTTGTTTGGCGG
TTTCTTCATCCAGCCCGATGCGTTGCCCGGGTATATTGCGTGGGTGAGAT
GGGCGACGTTTATGTACTATGCGTTCAATGCGGCGGTGCTCAACGAGTTT
GGAGCGGATGCTGGGGGGAGCGTGGAGGATTTTAGTCTGAGTAAGTGGGA
GGCGATTTCGGTGTTACTTGGGTTTGCTGCGGGGTACAAACTGATCTACT
TCCTGGCACTGCGCCTAAACAAACCGCGCTTCGATCGCAGTCTGTAG

Coding sequence (CDS) from alignment at NODE_993_length_15395_cov_3.930345:6757..8803+

>Gcaud1582.t1 ID=Gcaud1582.t1|Name=Gcaud1582.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1947bp|location=Sequence derived from alignment at NODE_993_length_15395_cov_3.930345:6757..8803+ (Gracilaria caudata M_176_S67 male)
ATGGAGCACGAGCACACCTTCATGAGCCACCAAGGAAGAAACATCGAGTT
TGATGCGCTTGAGGCCAATCGAGAGTTCAAGCAATTCTCGGAGAGTGTCA
CGTCGCGCGAAGATGCCATACCCGTCGACCTGGTATGGCGCAATCTCACT
TTCGACGTGCCGGCGCCCAAACTAAAAAAGGGACAGAAACCTGTCATTGA
ACCTGCGTCATCCGATGCAGAGCTGCCGTTTGGGGTAGCACCGCTCAAAC
CCAATATGCGACGCATTCTGCACGCCGTGAGCGGCCAGGTTCGCTCGGGA
CAAGTGCTGGCTATCATGGGGGCGTCGGGAAGCGGTAAGACTACGATGTT
GAATATGCTGTCTGGTCGACTCAAGTCTAGCAAGAAGTGCACTACAGGTG
GTCACGTTTATGTGAATGGACAGTCTCGCAACTTCAACACATTTCCACAC
ATTGCCAAATTTGTCGAGCAGGATGACACCACCATGTTTGCGGAGCTTAC
TGTTCGTGAACAAATCCTATTCGCCGCTCGACTGGCGCTGTCGAACAAGG
TTCCAGAGGAGCGAAAACGGGCGCGTGTGGAGAAAATCATTCAGGAGCTG
GGCCTTTCCAAGTGTAGCGACACGTACATTGGAAACGAACTCACGCGTGG
TGTGAGCGGCGGAGAGAGACGACGAGTTGCTATTGGCGTTGAACTTGTGA
CCGATCCTTCGCTTGTGTTTTTGGACGAGCCAACCACAGGACTTGACAGT
TTTAACGCGCTCAATGTGATGTCATCTCTACGTCATCTTGCACGCAATGG
TAGGACAATTATCACTACTATTCATCAACCAAGGTCGAGTATATTCCATT
TGTTTGACATGCTGTGTCTCATCGCGGAGGGGCGAACGGTGTATTTCGGT
CCTGCTGCAGATGTGGCCAAGTACTTTGATGGTCTTGGTTTCCAATGTCC
GCCACATTTCAACGTTGCGGATTATTTTATCGACGTTTTGTCCATCGACC
ATCGTTCAGAGGAACGGGAAGTAAAGACGGTATCGCGAATCGAATATGTT
TCGGATCAATATCGTCAAAACGTGGAGCCTGCGTTTTTGTCCAACGCCGA
TGCTTACCAGTCGGCACATGCGGTGCAACCGGGCGCGGACGTGGCCAAAT
ATGGAAACGGCGTTTTCAAGGAGTTTACCATTCTGGTTCAACGCACCAGT
AAGCTGATGCTTCGTGAGCGACAGATCAATTTCACGCGACTCGGACAGAC
GTTGGTCTTCGGGCTGTTACTGGGACTTATCTGGTTGAACTCTGGACGCG
ACTCGGAACAGGCGGCAGTTGAGGGTGTGATTTTCTTCATTGTGGTGAAT
CAGTGCTTCGATGCGGCATTCGGCGTGATCTTTGCGTATCCGACGGAACG
GGCAATCGTGAACCGCGAACGCGCAAGCGGTTTCTATCGTGATGTGTCGT
ACTTTTTCGGGAAACAACTGTGTGAACTTCCTCGTGCTGTGTTTTTCAAT
ATGCTGTTGTTATTGATTCTATACTTCATGGTAGGGTTGAACTCGGGCGC
GGGCGCATTCTTCGTGTTGTTGCTGATTACGGTGGTGGTGTCAGTAGCTG
GCGAGGGTATGGCACAAGCACTGAGCGTGTTTGGTGGCGATGAACAGACA
GCGGCGGCTATTGTACCGGTGGCAGTGATTTTCCAGCTGTTGTTTGGCGG
TTTCTTCATCCAGCCCGATGCGTTGCCCGGGTATATTGCGTGGGTGAGAT
GGGCGACGTTTATGTACTATGCGTTCAATGCGGCGGTGCTCAACGAGTTT
GGAGCGGATGCTGGGGGGAGCGTGGAGGATTTTAGTCTGAGTAAGTGGGA
GGCGATTTCGGTGTTACTTGGGTTTGCTGCGGGGTACAAACTGATCTACT
TCCTGGCACTGCGCCTAAACAAACCGCGCTTCGATCGCAGTCTGTAG