Gcaud158.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud158.t1
Unique NameGcaud158.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length159
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_9759_length_598_cov_4.463511contigNODE_9759_length_598_cov_4.463511:16..571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud158Gcaud158Gracilaria caudata M_176_S67 malegeneNODE_9759_length_598_cov_4.463511 16..571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud158.t1Gcaud158.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_9759_length_598_cov_4.463511 16..571 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud158.t1.start1Gcaud158.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_9759_length_598_cov_4.463511 16..18 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud158.t1.CDS1Gcaud158.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_9759_length_598_cov_4.463511 16..391 +
Gcaud158.t1.CDS2Gcaud158.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_9759_length_598_cov_4.463511 471..571 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud158.t1.exon1Gcaud158.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_9759_length_598_cov_4.463511 16..391 +
Gcaud158.t1.exon2Gcaud158.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_9759_length_598_cov_4.463511 471..571 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud158.t1.intron1Gcaud158.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_9759_length_598_cov_4.463511 392..470 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud158.t1.stop1Gcaud158.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_9759_length_598_cov_4.463511 569..571 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud158.t1 ID=Gcaud158.t1|Name=Gcaud158.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=159bp
MRPIGQIFTSDKRGRLLWKYTDNIFVSYSSRRQTNSSFGTLNMLRGSNID
MPPQADCGEELLKLANDRSVPAELTAMAVHDYGSYDGNVVIELAPVWGGG
RKKGSQTKLTIEEDQNNPGRISQVDQSLDWQTKGFTARWHPGGMVSYRLN
HYPEMLAP*
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spliced messenger RNA

>Gcaud158.t1 ID=Gcaud158.t1|Name=Gcaud158.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=477bp|location=Sequence derived from alignment at NODE_9759_length_598_cov_4.463511:16..571+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACCTATTGGTCAAATATTCACCTCCGATAAGCGAGGACGTTTGTT
GTGGAAGTACACTGACAATATCTTTGTTAGTTACTCTTCTAGACGGCAAA
CGAACTCCTCGTTCGGAACTCTCAACATGCTCAGGGGAAGTAACATAGAC
ATGCCCCCACAAGCCGACTGCGGTGAAGAGCTACTGAAGCTGGCAAATGA
TCGCTCTGTGCCTGCCGAGTTAACAGCGATGGCTGTGCACGACTACGGTT
CGTACGATGGAAATGTAGTTATTGAACTCGCACCGGTTTGGGGAGGGGGT
CGAAAAAAAGGTTCACAAACGAAGCTAACTATCGAGGAAGATCAGAACAA
TCCTGGAAGAATATCCCAAGTCGATCAGTCTCTAGATTGGCAGACCAAAG
GTTTTACGGCAAGATGGCATCCAGGAGGGATGGTATCTTATCGACTCAAC
CACTATCCAGAAATGTTGGCGCCCTAA
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protein sequence of Gcaud158.t1

>Gcaud158.t1 ID=Gcaud158.t1|Name=Gcaud158.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=159bp
MRPIGQIFTSDKRGRLLWKYTDNIFVSYSSRRQTNSSFGTLNMLRGSNID
MPPQADCGEELLKLANDRSVPAELTAMAVHDYGSYDGNVVIELAPVWGGG
RKKGSQTKLTIEEDQNNPGRISQVDQSLDWQTKGFTARWHPGGMVSYRLN
HYPEMLAP*
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mRNA from alignment at NODE_9759_length_598_cov_4.463511:16..571+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud158.t1 ID=Gcaud158.t1|Name=Gcaud158.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=556bp|location=Sequence derived from alignment at NODE_9759_length_598_cov_4.463511:16..571+ (Gracilaria caudata M_176_S67 male)
ATGAGACCTATTGGTCAAATATTCACCTCCGATAAGCGAGGACGTTTGTT
GTGGAAGTACACTGACAATATCTTTGTTAGTTACTCTTCTAGACGGCAAA
CGAACTCCTCGTTCGGAACTCTCAACATGCTCAGGGGAAGTAACATAGAC
ATGCCCCCACAAGCCGACTGCGGTGAAGAGCTACTGAAGCTGGCAAATGA
TCGCTCTGTGCCTGCCGAGTTAACAGCGATGGCTGTGCACGACTACGGTT
CGTACGATGGAAATGTAGTTATTGAACTCGCACCGGTTTGGGGAGGGGGT
CGAAAAAAAGGTTCACAAACGAAGCTAACTATCGAGGAAGATCAGAACAA
TCCTGGAAGAATATCCCAAGTCGATCGTAAGACCTATCTCAGAGCTCTAT
ATCTTGGAGTTATGGAACGCAAGGGTTTTTCATTCAAAGAACGCATTCAA
CGCAGAGTCTCTAGATTGGCAGACCAAAGGTTTTACGGCAAGATGGCATC
CAGGAGGGATGGTATCTTATCGACTCAACCACTATCCAGAAATGTTGGCG
CCCTAA
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Coding sequence (CDS) from alignment at NODE_9759_length_598_cov_4.463511:16..571+

>Gcaud158.t1 ID=Gcaud158.t1|Name=Gcaud158.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=477bp|location=Sequence derived from alignment at NODE_9759_length_598_cov_4.463511:16..571+ (Gracilaria caudata M_176_S67 male)
ATGAGACCTATTGGTCAAATATTCACCTCCGATAAGCGAGGACGTTTGTT
GTGGAAGTACACTGACAATATCTTTGTTAGTTACTCTTCTAGACGGCAAA
CGAACTCCTCGTTCGGAACTCTCAACATGCTCAGGGGAAGTAACATAGAC
ATGCCCCCACAAGCCGACTGCGGTGAAGAGCTACTGAAGCTGGCAAATGA
TCGCTCTGTGCCTGCCGAGTTAACAGCGATGGCTGTGCACGACTACGGTT
CGTACGATGGAAATGTAGTTATTGAACTCGCACCGGTTTGGGGAGGGGGT
CGAAAAAAAGGTTCACAAACGAAGCTAACTATCGAGGAAGATCAGAACAA
TCCTGGAAGAATATCCCAAGTCGATCAGTCTCTAGATTGGCAGACCAAAG
GTTTTACGGCAAGATGGCATCCAGGAGGGATGGTATCTTATCGACTCAAC
CACTATCCAGAAATGTTGGCGCCCTAA
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