Gcaud1576.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1576.t1
Unique NameGcaud1576.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length13
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_13966_length_392_cov_12.272425contigNODE_13966_length_392_cov_12.272425:250..392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1576Gcaud1576Gracilaria caudata M_176_S67 malegeneNODE_13966_length_392_cov_12.272425 250..392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1576.t1Gcaud1576.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_13966_length_392_cov_12.272425 250..392 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1576.t1.start1Gcaud1576.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_13966_length_392_cov_12.272425 250..252 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1576.t1.CDS1Gcaud1576.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_13966_length_392_cov_12.272425 250..257 +
Gcaud1576.t1.CDS2Gcaud1576.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_13966_length_392_cov_12.272425 364..392 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1576.t1.exon1Gcaud1576.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_13966_length_392_cov_12.272425 250..257 +
Gcaud1576.t1.exon2Gcaud1576.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_13966_length_392_cov_12.272425 364..392 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1576.t1.intron1Gcaud1576.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_13966_length_392_cov_12.272425 258..363 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1576.t1 ID=Gcaud1576.t1|Name=Gcaud1576.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=13bp
LCLVPFLFPSYHX
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spliced messenger RNA

>Gcaud1576.t1 ID=Gcaud1576.t1|Name=Gcaud1576.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=37bp|location=Sequence derived from alignment at NODE_13966_length_392_cov_12.272425:250..392+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ttgtgtctggttccctttctcttccccagttatcatc
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protein sequence of Gcaud1576.t1

>Gcaud1576.t1 ID=Gcaud1576.t1|Name=Gcaud1576.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=13bp
LCLVPFLFPSYHX
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mRNA from alignment at NODE_13966_length_392_cov_12.272425:250..392+

Legend: polypeptidestart_codonCDSexonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1576.t1 ID=Gcaud1576.t1|Name=Gcaud1576.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=143bp|location=Sequence derived from alignment at NODE_13966_length_392_cov_12.272425:250..392+ (Gracilaria caudata M_176_S67 male)
ttgtgtctgtacgtacatcacctcttcgtttttcttttcgatcaaccgcg
atgacgtttccattgtgtactaaccacctttactgtcttcttctgttttt
gtttttgtttacagggttccctttctcttccccagttatcatc
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Coding sequence (CDS) from alignment at NODE_13966_length_392_cov_12.272425:250..392+

>Gcaud1576.t1 ID=Gcaud1576.t1|Name=Gcaud1576.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=37bp|location=Sequence derived from alignment at NODE_13966_length_392_cov_12.272425:250..392+ (Gracilaria caudata M_176_S67 male)
ttgtgtctggttccctttctcttccccagttatcatc
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