Gcaud1535.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1535.t1
Unique NameGcaud1535.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length310
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4194_length_2486_cov_4.356576contigNODE_4194_length_2486_cov_4.356576:923..1852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1051613.XP_002999675.1
PFAMsPkinase
Max annot lvl4751|Fungi
Evalue1.01e-23
EggNOG OGs2EK1P@1|root,2SQ23@2759|Eukaryota,39U6I@33154|Opisthokonta,3PDK8@4751|Fungi,3QU16@4890|Ascomycota,219AK@147550|Sordariomycetes,1F2GF@1028384|Glomerellales
DescriptionProtein kinase domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1535Gcaud1535Gracilaria caudata M_176_S67 malegeneNODE_4194_length_2486_cov_4.356576 923..1852 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1535.t1.stop1Gcaud1535.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_4194_length_2486_cov_4.356576 923..925 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1535.t1.CDS1Gcaud1535.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_4194_length_2486_cov_4.356576 923..1852 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1535.t1.exon1Gcaud1535.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_4194_length_2486_cov_4.356576 923..1852 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1535.t1.start1Gcaud1535.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_4194_length_2486_cov_4.356576 1850..1852 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1535.t1Gcaud1535.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_4194_length_2486_cov_4.356576 923..1852 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1535.t1 ID=Gcaud1535.t1|Name=Gcaud1535.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=310bp
MDLSKYRPISCYISQQANDWAHQHEFEYDKQWFTIRVLGFHGTGEDEEED
LEVASKYMRVLFPEVQNLLHRTLPHMRSMEVKTIQVFDSDSIVTFTTGVS
LKPSIDNIFPGVAIFKAEDVSVMEHIGRSRHHKVTVKGLTGHYVRKLLSP
TNKDALSREISSLRKIGMHPNVTWLFGVLQERPGTINGLLTVFIPGQTLQ
AAIHASKVLKQKWKEQIEKTVKYIHSIGVVWGDVKPSNIMVDDDMNVRLV
DFGGGFTDGWVDVDLCGTVQGDEQGCEKLYGFIDDLPEQPSFQNSRHSVH
SDQQPRSSS*
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spliced messenger RNA

>Gcaud1535.t1 ID=Gcaud1535.t1|Name=Gcaud1535.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=930bp|location=Sequence derived from alignment at NODE_4194_length_2486_cov_4.356576:923..1852- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCTATCGAAGTATCGTCCAATAAGTTGTTATATATCTCAACAAGC
GAACGATTGGGCTCATCAACATGAATTTGAGTACGATAAACAATGGTTTA
CTATCAGGGTACTTGGGTTCCATGGAACGGGTGAGGATGAAGAGGAAGAT
CTAGAGGTGGCTTCCAAGTATATGCGTGTTCTCTTTCCAGAAGTTCAGAA
CCTTTTGCATCGCACCTTGCCGCACATGAGAAGCATGGAAGTCAAAACCA
TTCAAGTTTTCGATTCTGATTCTATCGTCACGTTCACAACTGGGGTCTCA
CTGAAGCCAAGCATTGACAACATTTTTCCAGGAGTCGCTATTTTCAAAGC
GGAGGACGTCTCAGTTATGGAACACATTGGAAGGAGCAGACATCACAAAG
TAACTGTAAAAGGTCTTACTGGCCATTATGTTCGAAAGCTGCTTTCACCG
ACCAACAAGGACGCCCTATCAAGAGAAATTTCATCCTTGCGAAAAATTGG
GATGCATCCTAATGTAACTTGGCTTTTCGGTGTTTTGCAGGAGCGTCCCG
GAACAATCAATGGGCTTTTGACCGTATTTATACCCGGACAAACTTTGCAA
GCGGCCATACACGCGAGCAAAGTTCTGAAACAGAAGTGGAAAGAACAAAT
AGAAAAGACCGTGAAATACATCCACTCCATAGGGGTCGTTTGGGGGGATG
TCAAGCCGTCAAACATAATGGTAGACGATGACATGAATGTACGTCTAGTC
GATTTTGGGGGCGGGTTCACCGATGGGTGGGTTGATGTGGATCTTTGTGG
GACTGTGCAGGGTGACGAGCAGGGTTGCGAGAAATTATATGGATTCATTG
ACGACCTTCCAGAACAGCCGTCATTCCAGAACAGCCGTCATTCAGTTCAC
TCAGATCAACAACCGCGCAGCAGTTCCTAA
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protein sequence of Gcaud1535.t1

>Gcaud1535.t1 ID=Gcaud1535.t1|Name=Gcaud1535.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=310bp
MDLSKYRPISCYISQQANDWAHQHEFEYDKQWFTIRVLGFHGTGEDEEED
LEVASKYMRVLFPEVQNLLHRTLPHMRSMEVKTIQVFDSDSIVTFTTGVS
LKPSIDNIFPGVAIFKAEDVSVMEHIGRSRHHKVTVKGLTGHYVRKLLSP
TNKDALSREISSLRKIGMHPNVTWLFGVLQERPGTINGLLTVFIPGQTLQ
AAIHASKVLKQKWKEQIEKTVKYIHSIGVVWGDVKPSNIMVDDDMNVRLV
DFGGGFTDGWVDVDLCGTVQGDEQGCEKLYGFIDDLPEQPSFQNSRHSVH
SDQQPRSSS*
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mRNA from alignment at NODE_4194_length_2486_cov_4.356576:923..1852-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1535.t1 ID=Gcaud1535.t1|Name=Gcaud1535.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=930bp|location=Sequence derived from alignment at NODE_4194_length_2486_cov_4.356576:923..1852- (Gracilaria caudata M_176_S67 male)
ATGGACCTATCGAAGTATCGTCCAATAAGTTGTTATATATCTCAACAAGC
GAACGATTGGGCTCATCAACATGAATTTGAGTACGATAAACAATGGTTTA
CTATCAGGGTACTTGGGTTCCATGGAACGGGTGAGGATGAAGAGGAAGAT
CTAGAGGTGGCTTCCAAGTATATGCGTGTTCTCTTTCCAGAAGTTCAGAA
CCTTTTGCATCGCACCTTGCCGCACATGAGAAGCATGGAAGTCAAAACCA
TTCAAGTTTTCGATTCTGATTCTATCGTCACGTTCACAACTGGGGTCTCA
CTGAAGCCAAGCATTGACAACATTTTTCCAGGAGTCGCTATTTTCAAAGC
GGAGGACGTCTCAGTTATGGAACACATTGGAAGGAGCAGACATCACAAAG
TAACTGTAAAAGGTCTTACTGGCCATTATGTTCGAAAGCTGCTTTCACCG
ACCAACAAGGACGCCCTATCAAGAGAAATTTCATCCTTGCGAAAAATTGG
GATGCATCCTAATGTAACTTGGCTTTTCGGTGTTTTGCAGGAGCGTCCCG
GAACAATCAATGGGCTTTTGACCGTATTTATACCCGGACAAACTTTGCAA
GCGGCCATACACGCGAGCAAAGTTCTGAAACAGAAGTGGAAAGAACAAAT
AGAAAAGACCGTGAAATACATCCACTCCATAGGGGTCGTTTGGGGGGATG
TCAAGCCGTCAAACATAATGGTAGACGATGACATGAATGTACGTCTAGTC
GATTTTGGGGGCGGGTTCACCGATGGGTGGGTTGATGTGGATCTTTGTGG
GACTGTGCAGGGTGACGAGCAGGGTTGCGAGAAATTATATGGATTCATTG
ACGACCTTCCAGAACAGCCGTCATTCCAGAACAGCCGTCATTCAGTTCAC
TCAGATCAACAACCGCGCAGCAGTTCCTAA
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Coding sequence (CDS) from alignment at NODE_4194_length_2486_cov_4.356576:923..1852-

>Gcaud1535.t1 ID=Gcaud1535.t1|Name=Gcaud1535.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=930bp|location=Sequence derived from alignment at NODE_4194_length_2486_cov_4.356576:923..1852- (Gracilaria caudata M_176_S67 male)
ATGGACCTATCGAAGTATCGTCCAATAAGTTGTTATATATCTCAACAAGC
GAACGATTGGGCTCATCAACATGAATTTGAGTACGATAAACAATGGTTTA
CTATCAGGGTACTTGGGTTCCATGGAACGGGTGAGGATGAAGAGGAAGAT
CTAGAGGTGGCTTCCAAGTATATGCGTGTTCTCTTTCCAGAAGTTCAGAA
CCTTTTGCATCGCACCTTGCCGCACATGAGAAGCATGGAAGTCAAAACCA
TTCAAGTTTTCGATTCTGATTCTATCGTCACGTTCACAACTGGGGTCTCA
CTGAAGCCAAGCATTGACAACATTTTTCCAGGAGTCGCTATTTTCAAAGC
GGAGGACGTCTCAGTTATGGAACACATTGGAAGGAGCAGACATCACAAAG
TAACTGTAAAAGGTCTTACTGGCCATTATGTTCGAAAGCTGCTTTCACCG
ACCAACAAGGACGCCCTATCAAGAGAAATTTCATCCTTGCGAAAAATTGG
GATGCATCCTAATGTAACTTGGCTTTTCGGTGTTTTGCAGGAGCGTCCCG
GAACAATCAATGGGCTTTTGACCGTATTTATACCCGGACAAACTTTGCAA
GCGGCCATACACGCGAGCAAAGTTCTGAAACAGAAGTGGAAAGAACAAAT
AGAAAAGACCGTGAAATACATCCACTCCATAGGGGTCGTTTGGGGGGATG
TCAAGCCGTCAAACATAATGGTAGACGATGACATGAATGTACGTCTAGTC
GATTTTGGGGGCGGGTTCACCGATGGGTGGGTTGATGTGGATCTTTGTGG
GACTGTGCAGGGTGACGAGCAGGGTTGCGAGAAATTATATGGATTCATTG
ACGACCTTCCAGAACAGCCGTCATTCCAGAACAGCCGTCATTCAGTTCAC
TCAGATCAACAACCGCGCAGCAGTTCCTAA
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