Gcaud153.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud153.t1
Unique NameGcaud153.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length54
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3997_length_2698_cov_4.573840contigNODE_3997_length_2698_cov_4.573840:2..161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud153Gcaud153Gracilaria caudata M_176_S67 malegeneNODE_3997_length_2698_cov_4.573840 2..161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud153.t1.CDS1Gcaud153.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_3997_length_2698_cov_4.573840 2..161 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud153.t1.exon1Gcaud153.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_3997_length_2698_cov_4.573840 2..161 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud153.t1.stop1Gcaud153.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_3997_length_2698_cov_4.573840 159..161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud153.t1Gcaud153.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_3997_length_2698_cov_4.573840 2..161 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud153.t1 ID=Gcaud153.t1|Name=Gcaud153.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=54bp
XMGDKSAGAAADKNSGVAGASADEGAVLGAAAPGGALAGAFGFGAFGGPT
PSL*
back to top

spliced messenger RNA

>Gcaud153.t1 ID=Gcaud153.t1|Name=Gcaud153.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=160bp|location=Sequence derived from alignment at NODE_3997_length_2698_cov_4.573840:2..161+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CATGGGTGACAAGTCCGCTGGTGCCGCCGCCGACAAGAACTCTGGTGTGG
CTGGTGCTTCCGCCGACGAGGGTGCCGTCCTCGGTGCCGCTGCTCCGGGT
GGTGCCCTCGCTGGCGCCTTCGGTTTTGGTGCCTTCGGTGGTCCCACCCC
GTCTTTGTAA
back to top

protein sequence of Gcaud153.t1

>Gcaud153.t1 ID=Gcaud153.t1|Name=Gcaud153.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=54bp
XMGDKSAGAAADKNSGVAGASADEGAVLGAAAPGGALAGAFGFGAFGGPT
PSL*
back to top

mRNA from alignment at NODE_3997_length_2698_cov_4.573840:2..161+

Legend: CDSpolypeptideexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud153.t1 ID=Gcaud153.t1|Name=Gcaud153.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=160bp|location=Sequence derived from alignment at NODE_3997_length_2698_cov_4.573840:2..161+ (Gracilaria caudata M_176_S67 male)
CATGGGTGACAAGTCCGCTGGTGCCGCCGCCGACAAGAACTCTGGTGTGG
CTGGTGCTTCCGCCGACGAGGGTGCCGTCCTCGGTGCCGCTGCTCCGGGT
GGTGCCCTCGCTGGCGCCTTCGGTTTTGGTGCCTTCGGTGGTCCCACCCC
GTCTTTGTAA
back to top

Coding sequence (CDS) from alignment at NODE_3997_length_2698_cov_4.573840:2..161+

>Gcaud153.t1 ID=Gcaud153.t1|Name=Gcaud153.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=160bp|location=Sequence derived from alignment at NODE_3997_length_2698_cov_4.573840:2..161+ (Gracilaria caudata M_176_S67 male)
CATGGGTGACAAGTCCGCTGGTGCCGCCGCCGACAAGAACTCTGGTGTGG
CTGGTGCTTCCGCCGACGAGGGTGCCGTCCTCGGTGCCGCTGCTCCGGGT
GGTGCCCTCGCTGGCGCCTTCGGTTTTGGTGCCTTCGGTGGTCCCACCCC
GTCTTTGTAA
back to top