Gcaud1527.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1527.t1
Unique Name	Gcaud1527.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	386

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_332_length_29614_cov_4.285540	contig	NODE_332_length_29614_cov_4.285540:17845..19002 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1527	Gcaud1527	Gracilaria caudata M_176_S67 male	gene	NODE_332_length_29614_cov_4.285540 17845..19002 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1527.t1.start1	Gcaud1527.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_332_length_29614_cov_4.285540 17845..17847 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1527.t1.CDS1	Gcaud1527.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_332_length_29614_cov_4.285540 17845..19002 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1527.t1.exon1	Gcaud1527.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_332_length_29614_cov_4.285540 17845..19002 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1527.t1.stop1	Gcaud1527.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_332_length_29614_cov_4.285540 19000..19002 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1527.t1	Gcaud1527.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_332_length_29614_cov_4.285540 17845..19002 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_332_length_29614_cov_4.285540:17845..19002+
coding sequence from alignment at NODE_332_length_29614_cov_4.285540:17845..19002+

mRNA sequence

>Gcaud1527.t1 ID=Gcaud1527.t1|Name=Gcaud1527.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=386bp
MYNSTAFTSPIYSSASPLAATPLRSLGVCSWLSPLHKSSLKYARRRHGAV
VQLSVSDGVPADERQTEEERQHEELIKQLDPKELKWSEIPFGSVQEELAA
IDEYEREEGLEADALWPKFLRGAAYEHWGQPQLALAQYSKIPAGTQLYKV
PQLWERKAYNSFKIGKVSEANAYFDVALTIYGQSVGNELHFAHWFQTNFQ
DYLPKWNGPNANVQRGICKYCVGVFKGTRESLVSQIALEGEHLEHAILWF
LAASVKSVTDGIAPEWDLKMVRRALKADYGYDPRLRLFIDLYMAHATGMF
GDVAQIEERLSNEIKNDDGDDIVSKVYIALYHDAFTKDQTECDRALDEVL
ALGGSRNQHDTENFFFFVAKNRFSSTASETSSSQK*

spliced messenger RNA

>Gcaud1527.t1 ID=Gcaud1527.t1|Name=Gcaud1527.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1158bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:17845..19002+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACAACTCCACCGCATTCACAAGCCCCATTTATTCATCAGCATCCCC
TCTCGCAGCGACACCACTCCGAAGCTTAGGTGTTTGCTCATGGTTATCGC
CGCTTCATAAGTCATCACTCAAGTATGCCCGCCGCAGGCACGGCGCAGTT
GTTCAACTCAGCGTTTCGGACGGAGTCCCCGCGGATGAACGGCAAACTGA
AGAGGAGCGGCAACACGAAGAGCTTATCAAGCAGCTCGATCCAAAGGAGC
TCAAATGGTCAGAGATACCTTTTGGAAGCGTCCAAGAAGAGCTCGCTGCT
ATTGATGAATACGAGCGCGAAGAAGGTCTTGAAGCTGATGCCCTTTGGCC
CAAGTTTCTTCGGGGAGCGGCATATGAACACTGGGGTCAACCACAGCTGG
CACTTGCCCAATACTCAAAGATACCTGCCGGAACACAGCTGTACAAAGTT
CCGCAGTTATGGGAAAGAAAAGCGTACAACTCCTTCAAAATAGGCAAAGT
TAGCGAGGCAAATGCTTATTTCGATGTCGCCCTCACTATCTACGGCCAAA
GTGTTGGGAACGAGCTCCACTTTGCACATTGGTTCCAAACTAATTTCCAA
GACTACCTTCCAAAATGGAATGGGCCAAATGCAAACGTCCAGCGAGGCAT
ATGCAAGTACTGCGTCGGCGTGTTCAAGGGTACTCGTGAGAGTCTCGTAT
CGCAAATTGCTTTGGAGGGCGAGCACTTGGAACACGCCATACTATGGTTT
TTGGCGGCTTCCGTGAAGTCGGTGACCGATGGAATTGCACCAGAGTGGGA
TCTAAAAATGGTGCGCAGGGCGCTTAAAGCGGATTACGGTTATGATCCAC
GTCTGCGCTTGTTTATAGACCTCTACATGGCGCATGCTACTGGTATGTTT
GGAGATGTTGCACAGATTGAGGAAAGGCTGTCGAACGAAATCAAAAACGA
TGACGGCGATGACATAGTGTCCAAAGTGTATATAGCTTTGTATCATGATG
CCTTTACAAAAGATCAAACAGAGTGCGACCGGGCTCTGGACGAGGTCCTG
GCCCTTGGGGGCTCGAGAAATCAACACGACACGGAGAACTTTTTCTTTTT
CGTTGCCAAGAATCGTTTTTCTTCGACAGCGTCAGAGACATCGAGTTCAC
AGAAGTGA

protein sequence of Gcaud1527.t1

>Gcaud1527.t1 ID=Gcaud1527.t1|Name=Gcaud1527.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=386bp
MYNSTAFTSPIYSSASPLAATPLRSLGVCSWLSPLHKSSLKYARRRHGAV
VQLSVSDGVPADERQTEEERQHEELIKQLDPKELKWSEIPFGSVQEELAA
IDEYEREEGLEADALWPKFLRGAAYEHWGQPQLALAQYSKIPAGTQLYKV
PQLWERKAYNSFKIGKVSEANAYFDVALTIYGQSVGNELHFAHWFQTNFQ
DYLPKWNGPNANVQRGICKYCVGVFKGTRESLVSQIALEGEHLEHAILWF
LAASVKSVTDGIAPEWDLKMVRRALKADYGYDPRLRLFIDLYMAHATGMF
GDVAQIEERLSNEIKNDDGDDIVSKVYIALYHDAFTKDQTECDRALDEVL
ALGGSRNQHDTENFFFFVAKNRFSSTASETSSSQK*

mRNA from alignment at NODE_332_length_29614_cov_4.285540:17845..19002+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1527.t1 ID=Gcaud1527.t1|Name=Gcaud1527.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1158bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:17845..19002+ (Gracilaria caudata M_176_S67 male)
ATGTACAACTCCACCGCATTCACAAGCCCCATTTATTCATCAGCATCCCC
TCTCGCAGCGACACCACTCCGAAGCTTAGGTGTTTGCTCATGGTTATCGC
CGCTTCATAAGTCATCACTCAAGTATGCCCGCCGCAGGCACGGCGCAGTT
GTTCAACTCAGCGTTTCGGACGGAGTCCCCGCGGATGAACGGCAAACTGA
AGAGGAGCGGCAACACGAAGAGCTTATCAAGCAGCTCGATCCAAAGGAGC
TCAAATGGTCAGAGATACCTTTTGGAAGCGTCCAAGAAGAGCTCGCTGCT
ATTGATGAATACGAGCGCGAAGAAGGTCTTGAAGCTGATGCCCTTTGGCC
CAAGTTTCTTCGGGGAGCGGCATATGAACACTGGGGTCAACCACAGCTGG
CACTTGCCCAATACTCAAAGATACCTGCCGGAACACAGCTGTACAAAGTT
CCGCAGTTATGGGAAAGAAAAGCGTACAACTCCTTCAAAATAGGCAAAGT
TAGCGAGGCAAATGCTTATTTCGATGTCGCCCTCACTATCTACGGCCAAA
GTGTTGGGAACGAGCTCCACTTTGCACATTGGTTCCAAACTAATTTCCAA
GACTACCTTCCAAAATGGAATGGGCCAAATGCAAACGTCCAGCGAGGCAT
ATGCAAGTACTGCGTCGGCGTGTTCAAGGGTACTCGTGAGAGTCTCGTAT
CGCAAATTGCTTTGGAGGGCGAGCACTTGGAACACGCCATACTATGGTTT
TTGGCGGCTTCCGTGAAGTCGGTGACCGATGGAATTGCACCAGAGTGGGA
TCTAAAAATGGTGCGCAGGGCGCTTAAAGCGGATTACGGTTATGATCCAC
GTCTGCGCTTGTTTATAGACCTCTACATGGCGCATGCTACTGGTATGTTT
GGAGATGTTGCACAGATTGAGGAAAGGCTGTCGAACGAAATCAAAAACGA
TGACGGCGATGACATAGTGTCCAAAGTGTATATAGCTTTGTATCATGATG
CCTTTACAAAAGATCAAACAGAGTGCGACCGGGCTCTGGACGAGGTCCTG
GCCCTTGGGGGCTCGAGAAATCAACACGACACGGAGAACTTTTTCTTTTT
CGTTGCCAAGAATCGTTTTTCTTCGACAGCGTCAGAGACATCGAGTTCAC
AGAAGTGA

Coding sequence (CDS) from alignment at NODE_332_length_29614_cov_4.285540:17845..19002+

>Gcaud1527.t1 ID=Gcaud1527.t1|Name=Gcaud1527.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1158bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:17845..19002+ (Gracilaria caudata M_176_S67 male)
ATGTACAACTCCACCGCATTCACAAGCCCCATTTATTCATCAGCATCCCC
TCTCGCAGCGACACCACTCCGAAGCTTAGGTGTTTGCTCATGGTTATCGC
CGCTTCATAAGTCATCACTCAAGTATGCCCGCCGCAGGCACGGCGCAGTT
GTTCAACTCAGCGTTTCGGACGGAGTCCCCGCGGATGAACGGCAAACTGA
AGAGGAGCGGCAACACGAAGAGCTTATCAAGCAGCTCGATCCAAAGGAGC
TCAAATGGTCAGAGATACCTTTTGGAAGCGTCCAAGAAGAGCTCGCTGCT
ATTGATGAATACGAGCGCGAAGAAGGTCTTGAAGCTGATGCCCTTTGGCC
CAAGTTTCTTCGGGGAGCGGCATATGAACACTGGGGTCAACCACAGCTGG
CACTTGCCCAATACTCAAAGATACCTGCCGGAACACAGCTGTACAAAGTT
CCGCAGTTATGGGAAAGAAAAGCGTACAACTCCTTCAAAATAGGCAAAGT
TAGCGAGGCAAATGCTTATTTCGATGTCGCCCTCACTATCTACGGCCAAA
GTGTTGGGAACGAGCTCCACTTTGCACATTGGTTCCAAACTAATTTCCAA
GACTACCTTCCAAAATGGAATGGGCCAAATGCAAACGTCCAGCGAGGCAT
ATGCAAGTACTGCGTCGGCGTGTTCAAGGGTACTCGTGAGAGTCTCGTAT
CGCAAATTGCTTTGGAGGGCGAGCACTTGGAACACGCCATACTATGGTTT
TTGGCGGCTTCCGTGAAGTCGGTGACCGATGGAATTGCACCAGAGTGGGA
TCTAAAAATGGTGCGCAGGGCGCTTAAAGCGGATTACGGTTATGATCCAC
GTCTGCGCTTGTTTATAGACCTCTACATGGCGCATGCTACTGGTATGTTT
GGAGATGTTGCACAGATTGAGGAAAGGCTGTCGAACGAAATCAAAAACGA
TGACGGCGATGACATAGTGTCCAAAGTGTATATAGCTTTGTATCATGATG
CCTTTACAAAAGATCAAACAGAGTGCGACCGGGCTCTGGACGAGGTCCTG
GCCCTTGGGGGCTCGAGAAATCAACACGACACGGAGAACTTTTTCTTTTT
CGTTGCCAAGAATCGTTTTTCTTCGACAGCGTCAGAGACATCGAGTTCAC
AGAAGTGA