Gcaud1523.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1523.t1
Unique NameGcaud1523.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length136
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_332_length_29614_cov_4.285540contigNODE_332_length_29614_cov_4.285540:11763..12170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1144275.COCOR_07974
PFAMsGlyco_hydro_19,LysM,PG_binding_1
Max annot lvl28221|Deltaproteobacteria
KEGG koko:K03791
Evalue1.1e-29
EggNOG OGsCOG1388@1|root,COG3179@1|root,COG1388@2|Bacteria,COG3179@2|Bacteria,1MYUR@1224|Proteobacteria,42UGP@68525|delta/epsilon subdivisions,2WWB8@28221|Deltaproteobacteria,2YZ5E@29|Myxococcales
DescriptionChitinase class I
COG categoryM
CAZyGH19
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1523Gcaud1523Gracilaria caudata M_176_S67 malegeneNODE_332_length_29614_cov_4.285540 11763..12170 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1523.t1.start1Gcaud1523.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_332_length_29614_cov_4.285540 11763..11765 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1523.t1.CDS1Gcaud1523.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_332_length_29614_cov_4.285540 11763..12170 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1523.t1.exon1Gcaud1523.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_332_length_29614_cov_4.285540 11763..12170 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1523.t1.stop1Gcaud1523.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_332_length_29614_cov_4.285540 12168..12170 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1523.t1Gcaud1523.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_332_length_29614_cov_4.285540 11763..12170 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1523.t1 ID=Gcaud1523.t1|Name=Gcaud1523.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=136bp
MYPYFLDSLSYANINSCLRVSSFVAQVAHESEGLLYFEELADGSQYEGRT
DLGNTVPGDGKRYKGRGPIQLTGRSTYQAAGEALGRDFEDDPESVGMPSG
PEVLVDLLLLHGSGTPGSEMQMLIWVLRQDLTISR*
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spliced messenger RNA

>Gcaud1523.t1 ID=Gcaud1523.t1|Name=Gcaud1523.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=408bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:11763..12170+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATCCATACTTCTTGGACAGTTTGAGTTATGCCAACATCAACAGCTG
CCTTCGTGTGTCTTCCTTCGTCGCCCAAGTCGCACACGAATCGGAAGGAC
TGCTGTACTTTGAGGAACTAGCCGACGGCTCACAATATGAAGGAAGAACG
GATTTGGGCAACACTGTTCCGGGTGATGGTAAACGATACAAGGGCAGAGG
TCCCATACAGCTCACCGGTCGTTCTACTTATCAAGCTGCTGGAGAGGCGC
TTGGAAGAGACTTTGAAGATGATCCTGAGAGCGTTGGCATGCCTTCTGGA
CCAGAAGTCCTGGTGGATTTGCTGCTGCTGCATGGTAGTGGGACGCCAGG
TTCGGAAATGCAGATGCTGATTTGGGTACTCAGGCAGGATTTGACGATAT
CACGATAG
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protein sequence of Gcaud1523.t1

>Gcaud1523.t1 ID=Gcaud1523.t1|Name=Gcaud1523.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=136bp
MYPYFLDSLSYANINSCLRVSSFVAQVAHESEGLLYFEELADGSQYEGRT
DLGNTVPGDGKRYKGRGPIQLTGRSTYQAAGEALGRDFEDDPESVGMPSG
PEVLVDLLLLHGSGTPGSEMQMLIWVLRQDLTISR*
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mRNA from alignment at NODE_332_length_29614_cov_4.285540:11763..12170+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1523.t1 ID=Gcaud1523.t1|Name=Gcaud1523.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=408bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:11763..12170+ (Gracilaria caudata M_176_S67 male)
ATGTATCCATACTTCTTGGACAGTTTGAGTTATGCCAACATCAACAGCTG
CCTTCGTGTGTCTTCCTTCGTCGCCCAAGTCGCACACGAATCGGAAGGAC
TGCTGTACTTTGAGGAACTAGCCGACGGCTCACAATATGAAGGAAGAACG
GATTTGGGCAACACTGTTCCGGGTGATGGTAAACGATACAAGGGCAGAGG
TCCCATACAGCTCACCGGTCGTTCTACTTATCAAGCTGCTGGAGAGGCGC
TTGGAAGAGACTTTGAAGATGATCCTGAGAGCGTTGGCATGCCTTCTGGA
CCAGAAGTCCTGGTGGATTTGCTGCTGCTGCATGGTAGTGGGACGCCAGG
TTCGGAAATGCAGATGCTGATTTGGGTACTCAGGCAGGATTTGACGATAT
CACGATAG
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Coding sequence (CDS) from alignment at NODE_332_length_29614_cov_4.285540:11763..12170+

>Gcaud1523.t1 ID=Gcaud1523.t1|Name=Gcaud1523.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=408bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:11763..12170+ (Gracilaria caudata M_176_S67 male)
ATGTATCCATACTTCTTGGACAGTTTGAGTTATGCCAACATCAACAGCTG
CCTTCGTGTGTCTTCCTTCGTCGCCCAAGTCGCACACGAATCGGAAGGAC
TGCTGTACTTTGAGGAACTAGCCGACGGCTCACAATATGAAGGAAGAACG
GATTTGGGCAACACTGTTCCGGGTGATGGTAAACGATACAAGGGCAGAGG
TCCCATACAGCTCACCGGTCGTTCTACTTATCAAGCTGCTGGAGAGGCGC
TTGGAAGAGACTTTGAAGATGATCCTGAGAGCGTTGGCATGCCTTCTGGA
CCAGAAGTCCTGGTGGATTTGCTGCTGCTGCATGGTAGTGGGACGCCAGG
TTCGGAAATGCAGATGCTGATTTGGGTACTCAGGCAGGATTTGACGATAT
CACGATAG
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