|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 765913.ThidrDRAFT_1965 |
| Preferred name | hisH |
| PFAMs | GATase,His_biosynth |
| Max annot lvl | 135613|Chromatiales |
| KEGG rclass | RC00010,RC01190,RC01943 |
| KEGG ko | ko:K01663 |
| KEGG Reaction | R04558 |
| KEGG Pathway | ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 |
| KEGG Module | M00026 |
| Evalue | 3.02e-172 |
| EggNOG OGs | COG0107@1|root,COG0118@1|root,COG0107@2|Bacteria,COG0118@2|Bacteria,1MUS0@1224|Proteobacteria,1RPJQ@1236|Gammaproteobacteria,1X28P@135613|Chromatiales |
| Description | IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR |
| COG category | E |
| BRITE | ko00000,ko00001,ko00002,ko01000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1521.t1.start1 | Gcaud1521.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_332_length_29614_cov_4.285540 6569..6571 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1521.t1.intron1 | Gcaud1521.t1.intron1 | Gracilaria caudata M_176_S67 male | intron | NODE_332_length_29614_cov_4.285540 8117..9917 + |
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1521.t1.stop1 | Gcaud1521.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_332_length_29614_cov_4.285540 10359..10361 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1521.t1 ID=Gcaud1521.t1|Name=Gcaud1521.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=664bp MPPPSAFLVPAPLPRRSRPARARRSISAPRASAARPVVTVLDYGAGNVRS LHNALRLLDVDIQYASSAQHILDAQRLIFPGVGSFGAAMSNLRSRAFDAP LRRYIADDRPFLGICLGLHTLFDGSEESPEQPGLAVFPGMVRRFRVDRTH GLAVPHIGWNSVNVQQSLSVLDERQQHSRFYFVHSFRVGVDELRGLSDVR LAVCEHGEPFVAAMQRGNVMATQFHPEKSGADGLRLLRDFVRPQASRHAM SPRTQRTTDTERTKHGLAKRVVACLDVRENDDGDLVVTKGDQYDVRHAHS GRVRNLGKPVLLAKRYFEQGADEICFLNITSFRGEPVSAAPMLEVLRQTS EHVFVPLCIGGGIRDYVDASGVSYSALDVAATYFRAGADKVSLGSDAVYA AERFWKHGKDGSSSIERISYVYGAQAVVVSLDPRRVFLAEGEEAPFEARA VTLEDGRRCWYQCTVKGGREARPIDVVRVAVAAQQLGAGELLLNCMDHDG QKRGFDVPLIRAVREAGTLNSNGVVSLNAVATMIDSLKCDLGGTIRIRTA ADTTVTQSLAELYPTNTVVVISSSIFGECILEEDVSTDEGFDRSRESSDA YLIINSVSGSPEDAVIQGTPTNFFSLFEKAGLELSRVSFPTEGTDSMTIV ARPFTLESKAEVV* back to topspliced messenger RNA >Gcaud1521.t1 ID=Gcaud1521.t1|Name=Gcaud1521.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1992bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:6569..10361+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCCGCCGCCCAGCGCCTTCCTCGTGCCGGCGCCGCTGCCGCGCCGATC GCGCCCCGCCCGCGCCCGCCGCTCCATCTCCGCGCCGCGCGCCTCCGCCG CGCGTCCCGTCGTCACCGTGCTCGACTACGGCGCCGGCAACGTGCGTTCG CTGCACAACGCGCTGCGTCTGCTCGACGTAGACATTCAATACGCCTCCAG CGCGCAACACATTCTCGATGCGCAACGTCTCATCTTCCCCGGCGTCGGCT CCTTCGGCGCCGCCATGAGCAATCTACGTTCCCGTGCTTTCGACGCGCCG CTGCGTCGATACATCGCGGATGACCGGCCGTTTCTGGGCATTTGTCTCGG GCTCCACACGCTGTTTGACGGCTCCGAGGAGAGTCCTGAGCAACCGGGCC TCGCCGTGTTTCCCGGAATGGTGCGTCGCTTCCGCGTCGATCGCACGCAT GGCTTGGCTGTGCCGCATATCGGCTGGAATAGTGTGAACGTGCAACAGTC GTTGTCGGTGCTGGATGAGCGCCAACAACACAGCCGCTTTTACTTTGTAC ATTCGTTCCGCGTGGGAGTGGATGAGCTGCGCGGGTTGTCGGATGTGCGA TTGGCCGTTTGTGAACATGGAGAACCGTTTGTGGCTGCCATGCAGCGCGG CAACGTCATGGCCACACAGTTTCACCCCGAAAAGTCTGGCGCCGATGGCC TTCGTCTTCTTCGTGACTTCGTGCGTCCGCAAGCATCACGCCACGCAATG TCGCCGCGTACCCAGCGCACCACAGACACAGAGCGCACGAAACACGGGCT CGCCAAGCGTGTGGTGGCGTGTCTGGATGTCCGCGAGAACGACGACGGCG ATCTGGTGGTCACCAAGGGCGATCAGTACGACGTACGTCACGCGCACTCC GGCCGCGTACGCAACCTGGGCAAGCCCGTTCTGCTGGCCAAACGTTACTT TGAGCAGGGCGCGGACGAGATATGTTTCCTCAACATCACGTCGTTCCGCG GCGAACCGGTGAGCGCCGCGCCCATGTTGGAGGTGTTGCGACAGACGTCG GAGCACGTGTTCGTGCCGCTGTGCATTGGCGGCGGCATCCGCGATTACGT GGATGCGAGTGGCGTGAGTTATAGCGCGTTGGACGTGGCGGCCACCTATT TCCGTGCTGGCGCCGATAAGGTGTCGCTGGGCAGTGACGCGGTGTATGCG GCGGAGCGCTTCTGGAAGCACGGCAAGGATGGGAGCTCGTCCATCGAGCG CATTTCGTACGTGTACGGCGCGCAGGCGGTGGTGGTGTCGCTGGACCCGC GACGCGTGTTTCTGGCGGAAGGTGAAGAGGCGCCGTTTGAGGCGCGTGCG GTGACACTGGAGGATGGCCGACGATGTTGGTATCAGTGTACGGTGAAGGG CGGCCGAGAGGCACGACCCATCGACGTGGTGCGCGTGGCGGTGGCGGCGC AGCAACTGGGCGCCGGCGAACTGCTGCTCAATTGCATGGACCACGACGGA CAGAAACGCGGCTTCGATGTGCCGCTCATCCGCGCGGTGAGGGAGGCGGG AACGCTCAACAGCAATGGTGTCGTATCACTAAACGCTGTCGCGACGATGA TTGATTCCTTGAAATGCGACTTGGGAGGAACTATTCGGATCAGAACCGCA GCTGACACCACAGTGACGCAGTCACTTGCTGAGCTTTATCCTACTAACAC CGTTGTCGTCATCAGCAGCAGCATATTCGGAGAATGTATTCTCGAGGAAG ATGTTTCAACGGATGAAGGTTTCGATCGCTCACGCGAGTCCAGTGATGCC TATCTCATCATCAATTCTGTCTCCGGCTCCCCCGAAGATGCTGTCATACA AGGAACGCCCACCAACTTCTTTTCTCTTTTTGAGAAAGCCGGATTGGAAC TGTCGCGCGTTAGTTTTCCCACTGAGGGCACTGATTCAATGACGATTGTC GCTAGGCCATTTACTCTAGAAAGCAAAGCTGAAGTcgtctag back to topprotein sequence of Gcaud1521.t1 >Gcaud1521.t1 ID=Gcaud1521.t1|Name=Gcaud1521.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=664bp
MPPPSAFLVPAPLPRRSRPARARRSISAPRASAARPVVTVLDYGAGNVRS LHNALRLLDVDIQYASSAQHILDAQRLIFPGVGSFGAAMSNLRSRAFDAP LRRYIADDRPFLGICLGLHTLFDGSEESPEQPGLAVFPGMVRRFRVDRTH GLAVPHIGWNSVNVQQSLSVLDERQQHSRFYFVHSFRVGVDELRGLSDVR LAVCEHGEPFVAAMQRGNVMATQFHPEKSGADGLRLLRDFVRPQASRHAM SPRTQRTTDTERTKHGLAKRVVACLDVRENDDGDLVVTKGDQYDVRHAHS GRVRNLGKPVLLAKRYFEQGADEICFLNITSFRGEPVSAAPMLEVLRQTS EHVFVPLCIGGGIRDYVDASGVSYSALDVAATYFRAGADKVSLGSDAVYA AERFWKHGKDGSSSIERISYVYGAQAVVVSLDPRRVFLAEGEEAPFEARA VTLEDGRRCWYQCTVKGGREARPIDVVRVAVAAQQLGAGELLLNCMDHDG QKRGFDVPLIRAVREAGTLNSNGVVSLNAVATMIDSLKCDLGGTIRIRTA ADTTVTQSLAELYPTNTVVVISSSIFGECILEEDVSTDEGFDRSRESSDA YLIINSVSGSPEDAVIQGTPTNFFSLFEKAGLELSRVSFPTEGTDSMTIV ARPFTLESKAEVV* back to topmRNA from alignment at NODE_332_length_29614_cov_4.285540:6569..10361+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1521.t1 ID=Gcaud1521.t1|Name=Gcaud1521.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=3793bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:6569..10361+ (Gracilaria caudata M_176_S67 male) ATGCCGCCGCCCAGCGCCTTCCTCGTGCCGGCGCCGCTGCCGCGCCGATC
GCGCCCCGCCCGCGCCCGCCGCTCCATCTCCGCGCCGCGCGCCTCCGCCG
CGCGTCCCGTCGTCACCGTGCTCGACTACGGCGCCGGCAACGTGCGTTCG
CTGCACAACGCGCTGCGTCTGCTCGACGTAGACATTCAATACGCCTCCAG
CGCGCAACACATTCTCGATGCGCAACGTCTCATCTTCCCCGGCGTCGGCT
CCTTCGGCGCCGCCATGAGCAATCTACGTTCCCGTGCTTTCGACGCGCCG
CTGCGTCGATACATCGCGGATGACCGGCCGTTTCTGGGCATTTGTCTCGG
GCTCCACACGCTGTTTGACGGCTCCGAGGAGAGTCCTGAGCAACCGGGCC
TCGCCGTGTTTCCCGGAATGGTGCGTCGCTTCCGCGTCGATCGCACGCAT
GGCTTGGCTGTGCCGCATATCGGCTGGAATAGTGTGAACGTGCAACAGTC
GTTGTCGGTGCTGGATGAGCGCCAACAACACAGCCGCTTTTACTTTGTAC
ATTCGTTCCGCGTGGGAGTGGATGAGCTGCGCGGGTTGTCGGATGTGCGA
TTGGCCGTTTGTGAACATGGAGAACCGTTTGTGGCTGCCATGCAGCGCGG
CAACGTCATGGCCACACAGTTTCACCCCGAAAAGTCTGGCGCCGATGGCC
TTCGTCTTCTTCGTGACTTCGTGCGTCCGCAAGCATCACGCCACGCAATG
TCGCCGCGTACCCAGCGCACCACAGACACAGAGCGCACGAAACACGGGCT
CGCCAAGCGTGTGGTGGCGTGTCTGGATGTCCGCGAGAACGACGACGGCG
ATCTGGTGGTCACCAAGGGCGATCAGTACGACGTACGTCACGCGCACTCC
GGCCGCGTACGCAACCTGGGCAAGCCCGTTCTGCTGGCCAAACGTTACTT
TGAGCAGGGCGCGGACGAGATATGTTTCCTCAACATCACGTCGTTCCGCG
GCGAACCGGTGAGCGCCGCGCCCATGTTGGAGGTGTTGCGACAGACGTCG
GAGCACGTGTTCGTGCCGCTGTGCATTGGCGGCGGCATCCGCGATTACGT
GGATGCGAGTGGCGTGAGTTATAGCGCGTTGGACGTGGCGGCCACCTATT
TCCGTGCTGGCGCCGATAAGGTGTCGCTGGGCAGTGACGCGGTGTATGCG
GCGGAGCGCTTCTGGAAGCACGGCAAGGATGGGAGCTCGTCCATCGAGCG
CATTTCGTACGTGTACGGCGCGCAGGCGGTGGTGGTGTCGCTGGACCCGC
GACGCGTGTTTCTGGCGGAAGGTGAAGAGGCGCCGTTTGAGGCGCGTGCG
GTGACACTGGAGGATGGCCGACGATGTTGGTATCAGTGTACGGTGAAGGG
CGGCCGAGAGGCACGACCCATCGACGTGGTGCGCGTGGCGGTGGCGGCGC
AGCAACTGGGCGCCGGCGAACTGCTGCTCAATTGCATGGACCACGACGGA
CAGAAACGCGGCTTCGATGTGCCGCTCATCCGCGCGGTGAGGGAGGCGGT
GAGCATTCCGGTGATcgcgagctcgggcgcgggcgcggcggagcacttca
cgcagtgcttcgagcgcagcggcgcggaggcggcgctggcggcgggcATT
TTTCACCGCGACGAGGTGCGCATTGCGGACGTGAAGGCGCACATGCTGCG
CCACGGCACGCGCGTGCGCGTGGGCGCGGCGCTCGCAGACGTGCTGCGCG
TGGGCGAGCAGGCGCAGACGTAGACGTCGTGCCGTTCCCGCGGCGCACCG
TTGCGGTGCGTGCGTGCTGCGCGTAAAGTCGAGGACGCGTGATCACTTTT
TGGGTGAAGGGCGGCACGCGcccccccccccccccccccccccGGGGGGG
GGGGGGGTCACGATATAGTACTGTACTCTGTACTGCGTTGAGTACAAGCG
ATTCTTCTTATGGGCCCAGGTTTCACAGCTCACTTGAGGCATTTGAATCA
AATCTTCTCAATCTCATCTTCCCAGGCCCAAACCCAATCTACCCAAAGCA
TACATCTTCAGGTATGATGCTTGTATACCATTGTACATCATCATCATCAT
GCACGATAGCTGTATCTTCGCATAAGGTTACACACTAGGTCATTTCAACG
GGCTGTCCCTTTAATTCACCTTCACCCCAGTACGCGCGAATCTAGCAAAC
AACACTTCACCATCACACGAACGTCGCAATTCGGAATGTGCATCCATGAT
GCCGATACACTGGCGGCGGCACGTCTCAGTGCCGTCGCCGCAGGTCTGAA
GATTTCATCAAGTTCTGTTAACTGCCCGTTCCACTTTCACGTCGATGCGG
GTCCCTACCAATTCAATGTTGCGTATCCCACGCGTTTCTGTTTGTTTAGA
TGTCCAGACGGCCCATTCCGCTTCGAGCTCACACTTCTTTTGTCCAACGC
ACATCATATCAATGGCCATAAGAACACGGCAGCCTTGCGTCATCTTCGTG
GCCTATGAGCTTAGCGATATCACCATGACGTTCTTCGTTTTGAATATAAA
CAGCGTTAATGTACGGTTCCTGAGAATCGCTCTATCATCTCCAGCGCATC
TGGAGGTAATTGTCAGTGAAACATGCAGGCCAAGCATCTCTTCCTTCTTT
TTTCTGCTgttgttgttgttcttcttcttcttctttattgtggacaacag
cttctaattactaagctgtagtaaaactttcaaagaaagtttgctctctt
tagaaaggccaaaaacttctgtggcacttgtctaatGCTGTTGTTCCGAA
TTCGGTCGCGTAATCGCCGAAGAACAATGCAAACGCCCCGAGTTTCGCGA
TAACTGCGTTGTTCGACCTTGTAATCTTTTTCTGTTCCCTGGTTTCGGGT
GCCTACCCCCGCTTCCCTCGCCATCGCCCACGCCGTCGCCCTCCAAATCT
CGAACACCATCTGTGTCACCTTCAACGTCATCATCTTTCGCACCATCTTC
CTCATCATCTCCCAAGCCATATCCTTCATCGGCTCTAGAACCTTCTCGTT
CGGCGTCTTTCTCGCCTTCTGTGCTATCATCTCTCTCGCCATCTCTTTCA
ATTTCTCCCTCATCACCTCTTAATCCGCCTTCTACACCATCTTGATCATC
CTCTCCGTCATTATCTATTGTATCATCTTCGACTCAATATGTTACTTCAA
CTCCCAAACCGTCTGCGACAGCTTCTGCCTCACCTTCTTCTAGCGCTAAC
GCAGCATCTTCCTTTTCAGCTGTTACTTTCCGAACTGGCGAAGTCACAAC
TTCCGAAGAGATATCATCAACGGAGGGTACTTTCTCTTTCTCTTTCAAGG
GAACGCTCAACAGCAATGGTGTCGTATCACTAAACGCTGTCGCGACGATG
ATTGATTCCTTGAAATGCGACTTGGGAGGAACTATTCGGATCAGAACCGC
AGCTGACACCACAGTGACGCAGTCACTTGCTGAGCTTTATCCTACTAACA
CCGTTGTCGTCATCAGCAGCAGCATATTCGGAGAATGTATTCTCGAGGAA
GATGTTTCAACGGATGAAGGTTTCGATCGCTCACGCGAGTCCAGTGATGC
CTATCTCATCATCAATTCTGTCTCCGGCTCCCCCGAAGATGCTGTCATAC
AAGGAACGCCCACCAACTTCTTTTCTCTTTTTGAGAAAGCCGGATTGGAA
CTGTCGCGCGTTAGTTTTCCCACTGAGGGCACTGATTCAATGACGATTGT
CGCTAGGCCATTTACTCTAGAAAGCAAAGCTGAAGTcgtctag back to topCoding sequence (CDS) from alignment at NODE_332_length_29614_cov_4.285540:6569..10361+ >Gcaud1521.t1 ID=Gcaud1521.t1|Name=Gcaud1521.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1992bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:6569..10361+ (Gracilaria caudata M_176_S67 male) ATGCCGCCGCCCAGCGCCTTCCTCGTGCCGGCGCCGCTGCCGCGCCGATC GCGCCCCGCCCGCGCCCGCCGCTCCATCTCCGCGCCGCGCGCCTCCGCCG CGCGTCCCGTCGTCACCGTGCTCGACTACGGCGCCGGCAACGTGCGTTCG CTGCACAACGCGCTGCGTCTGCTCGACGTAGACATTCAATACGCCTCCAG CGCGCAACACATTCTCGATGCGCAACGTCTCATCTTCCCCGGCGTCGGCT CCTTCGGCGCCGCCATGAGCAATCTACGTTCCCGTGCTTTCGACGCGCCG CTGCGTCGATACATCGCGGATGACCGGCCGTTTCTGGGCATTTGTCTCGG GCTCCACACGCTGTTTGACGGCTCCGAGGAGAGTCCTGAGCAACCGGGCC TCGCCGTGTTTCCCGGAATGGTGCGTCGCTTCCGCGTCGATCGCACGCAT GGCTTGGCTGTGCCGCATATCGGCTGGAATAGTGTGAACGTGCAACAGTC GTTGTCGGTGCTGGATGAGCGCCAACAACACAGCCGCTTTTACTTTGTAC ATTCGTTCCGCGTGGGAGTGGATGAGCTGCGCGGGTTGTCGGATGTGCGA TTGGCCGTTTGTGAACATGGAGAACCGTTTGTGGCTGCCATGCAGCGCGG CAACGTCATGGCCACACAGTTTCACCCCGAAAAGTCTGGCGCCGATGGCC TTCGTCTTCTTCGTGACTTCGTGCGTCCGCAAGCATCACGCCACGCAATG TCGCCGCGTACCCAGCGCACCACAGACACAGAGCGCACGAAACACGGGCT CGCCAAGCGTGTGGTGGCGTGTCTGGATGTCCGCGAGAACGACGACGGCG ATCTGGTGGTCACCAAGGGCGATCAGTACGACGTACGTCACGCGCACTCC GGCCGCGTACGCAACCTGGGCAAGCCCGTTCTGCTGGCCAAACGTTACTT TGAGCAGGGCGCGGACGAGATATGTTTCCTCAACATCACGTCGTTCCGCG GCGAACCGGTGAGCGCCGCGCCCATGTTGGAGGTGTTGCGACAGACGTCG GAGCACGTGTTCGTGCCGCTGTGCATTGGCGGCGGCATCCGCGATTACGT GGATGCGAGTGGCGTGAGTTATAGCGCGTTGGACGTGGCGGCCACCTATT TCCGTGCTGGCGCCGATAAGGTGTCGCTGGGCAGTGACGCGGTGTATGCG GCGGAGCGCTTCTGGAAGCACGGCAAGGATGGGAGCTCGTCCATCGAGCG CATTTCGTACGTGTACGGCGCGCAGGCGGTGGTGGTGTCGCTGGACCCGC GACGCGTGTTTCTGGCGGAAGGTGAAGAGGCGCCGTTTGAGGCGCGTGCG GTGACACTGGAGGATGGCCGACGATGTTGGTATCAGTGTACGGTGAAGGG CGGCCGAGAGGCACGACCCATCGACGTGGTGCGCGTGGCGGTGGCGGCGC AGCAACTGGGCGCCGGCGAACTGCTGCTCAATTGCATGGACCACGACGGA CAGAAACGCGGCTTCGATGTGCCGCTCATCCGCGCGGTGAGGGAGGCGGG AACGCTCAACAGCAATGGTGTCGTATCACTAAACGCTGTCGCGACGATGA TTGATTCCTTGAAATGCGACTTGGGAGGAACTATTCGGATCAGAACCGCA GCTGACACCACAGTGACGCAGTCACTTGCTGAGCTTTATCCTACTAACAC CGTTGTCGTCATCAGCAGCAGCATATTCGGAGAATGTATTCTCGAGGAAG ATGTTTCAACGGATGAAGGTTTCGATCGCTCACGCGAGTCCAGTGATGCC TATCTCATCATCAATTCTGTCTCCGGCTCCCCCGAAGATGCTGTCATACA AGGAACGCCCACCAACTTCTTTTCTCTTTTTGAGAAAGCCGGATTGGAAC TGTCGCGCGTTAGTTTTCCCACTGAGGGCACTGATTCAATGACGATTGTC GCTAGGCCATTTACTCTAGAAAGCAAAGCTGAAGTcgtctag back to top
|