Gcaud1520.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1520.t1
Unique NameGcaud1520.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length262
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_332_length_29614_cov_4.285540contigNODE_332_length_29614_cov_4.285540:3777..4562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_87329
PFAMsTIM
Max annot lvl2759|Eukaryota
KEGG rclassRC00423
KEGG koko:K01803
KEGG ReactionR01015
KEGG Pathwayko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00001,M00002,M00003
Evalue2.22e-116
EggNOG OGsCOG0149@1|root,KOG1643@2759|Eukaryota
EC5.3.1.1
Descriptiontriosephosphate isomerase
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1520Gcaud1520Gracilaria caudata M_176_S67 malegeneNODE_332_length_29614_cov_4.285540 3777..4562 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1520.t1.stop1Gcaud1520.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_332_length_29614_cov_4.285540 3777..3779 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1520.t1.CDS1Gcaud1520.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_332_length_29614_cov_4.285540 3777..4562 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1520.t1.exon1Gcaud1520.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_332_length_29614_cov_4.285540 3777..4562 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1520.t1.start1Gcaud1520.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_332_length_29614_cov_4.285540 4560..4562 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1520.t1Gcaud1520.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_332_length_29614_cov_4.285540 3777..4562 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1520.t1 ID=Gcaud1520.t1|Name=Gcaud1520.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=262bp
MSAGRRFFVGGNWKCNLDKSAISELVSAFNAAPPLDAAAVEVVVAPPAVY
LDSTRQSLRADFATAAQNSWLSKGGAFTGEVDALMVKDVGAQWVILGHSE
RRHIKEIGESDQTIATKAAYATQHASLGVIYCIGELLEQREAGETVSVCE
RQLQALKEAISDWGTVVIAYEPVWAIGTGKVATPEQAEEVHQAVRQWLAE
NVSPQVAAATRILYGGSVSPANCEQLAKQPNIDGFLVGGASMKPSFLEIV
DSYKTALAGAV*
back to top

spliced messenger RNA

>Gcaud1520.t1 ID=Gcaud1520.t1|Name=Gcaud1520.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=786bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:3777..4562- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCCGGACGCCGCTTCTTCGTGGGCGGAAACTGGAAGTGCAATCT
CGACAAATCGGCCATCAGCGAGCTGGTATCCGCCTTCAACGCCGCGCCCC
CGCTCGACGCCGCCGCCGTGGAGGTGGTGGTGGCGCCCCCCGCGGTGTAT
CTGGACAGCACGCGACAGAGCTTGCGCGCGGACTTTGCCACGGCGGCGCA
AAACTCGTGGCTGTCGAAGGGCGGCGCGTTCACGGGTGAGGTGGACGCGC
TGATGGTGAAGGACGTGGGTGCACAATGGGTGATTCTTGGACACTCGGAA
CGTCGTCATATCAAGGAGATTGGCGAATCGGACCAAACAATTGCCACCAA
GGCGGCGTACGCGACGCAGCACGCTTCGCTGGGTGTGATTTACTGCATTG
GCGAGTTGTTGGAGCAGCGCGAGGCGGGCGAGACTGTGAGCGTGTGCGAG
CGCCAGCTGCAGGCGCTGAAGGAGGCGATTTCGGACTGGGGGACGGTGGT
GATTGCGTACGAACCGGTGTGGGCGATTGGCACGGGCAAGGTGGCGACGC
CGGAACAGGCGGAAGAGGTGCACCAGGCGGTGCGTCAGTGGTTGGCGGAG
AACGTGTCGCCGCAGGTGGCGGCGGCTACCAGGATTCTTTATGGCGGCAG
TGTGTCGCCAGCGAATTGTGAACAGTTGGCAAAGCAGCCCAATATTGATG
GCTTTCTGGTGGGCGGCGCGAGCATGAAGCCGTCGTTCTTGGAGATCGTG
GACTCATACAAGACGGCGTTGGCGGGCGCCGTGTAG
back to top

protein sequence of Gcaud1520.t1

>Gcaud1520.t1 ID=Gcaud1520.t1|Name=Gcaud1520.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=262bp
MSAGRRFFVGGNWKCNLDKSAISELVSAFNAAPPLDAAAVEVVVAPPAVY
LDSTRQSLRADFATAAQNSWLSKGGAFTGEVDALMVKDVGAQWVILGHSE
RRHIKEIGESDQTIATKAAYATQHASLGVIYCIGELLEQREAGETVSVCE
RQLQALKEAISDWGTVVIAYEPVWAIGTGKVATPEQAEEVHQAVRQWLAE
NVSPQVAAATRILYGGSVSPANCEQLAKQPNIDGFLVGGASMKPSFLEIV
DSYKTALAGAV*
back to top

mRNA from alignment at NODE_332_length_29614_cov_4.285540:3777..4562-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1520.t1 ID=Gcaud1520.t1|Name=Gcaud1520.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=786bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:3777..4562- (Gracilaria caudata M_176_S67 male)
ATGAGCGCCGGACGCCGCTTCTTCGTGGGCGGAAACTGGAAGTGCAATCT
CGACAAATCGGCCATCAGCGAGCTGGTATCCGCCTTCAACGCCGCGCCCC
CGCTCGACGCCGCCGCCGTGGAGGTGGTGGTGGCGCCCCCCGCGGTGTAT
CTGGACAGCACGCGACAGAGCTTGCGCGCGGACTTTGCCACGGCGGCGCA
AAACTCGTGGCTGTCGAAGGGCGGCGCGTTCACGGGTGAGGTGGACGCGC
TGATGGTGAAGGACGTGGGTGCACAATGGGTGATTCTTGGACACTCGGAA
CGTCGTCATATCAAGGAGATTGGCGAATCGGACCAAACAATTGCCACCAA
GGCGGCGTACGCGACGCAGCACGCTTCGCTGGGTGTGATTTACTGCATTG
GCGAGTTGTTGGAGCAGCGCGAGGCGGGCGAGACTGTGAGCGTGTGCGAG
CGCCAGCTGCAGGCGCTGAAGGAGGCGATTTCGGACTGGGGGACGGTGGT
GATTGCGTACGAACCGGTGTGGGCGATTGGCACGGGCAAGGTGGCGACGC
CGGAACAGGCGGAAGAGGTGCACCAGGCGGTGCGTCAGTGGTTGGCGGAG
AACGTGTCGCCGCAGGTGGCGGCGGCTACCAGGATTCTTTATGGCGGCAG
TGTGTCGCCAGCGAATTGTGAACAGTTGGCAAAGCAGCCCAATATTGATG
GCTTTCTGGTGGGCGGCGCGAGCATGAAGCCGTCGTTCTTGGAGATCGTG
GACTCATACAAGACGGCGTTGGCGGGCGCCGTGTAG
back to top

Coding sequence (CDS) from alignment at NODE_332_length_29614_cov_4.285540:3777..4562-

>Gcaud1520.t1 ID=Gcaud1520.t1|Name=Gcaud1520.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=786bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:3777..4562- (Gracilaria caudata M_176_S67 male)
ATGAGCGCCGGACGCCGCTTCTTCGTGGGCGGAAACTGGAAGTGCAATCT
CGACAAATCGGCCATCAGCGAGCTGGTATCCGCCTTCAACGCCGCGCCCC
CGCTCGACGCCGCCGCCGTGGAGGTGGTGGTGGCGCCCCCCGCGGTGTAT
CTGGACAGCACGCGACAGAGCTTGCGCGCGGACTTTGCCACGGCGGCGCA
AAACTCGTGGCTGTCGAAGGGCGGCGCGTTCACGGGTGAGGTGGACGCGC
TGATGGTGAAGGACGTGGGTGCACAATGGGTGATTCTTGGACACTCGGAA
CGTCGTCATATCAAGGAGATTGGCGAATCGGACCAAACAATTGCCACCAA
GGCGGCGTACGCGACGCAGCACGCTTCGCTGGGTGTGATTTACTGCATTG
GCGAGTTGTTGGAGCAGCGCGAGGCGGGCGAGACTGTGAGCGTGTGCGAG
CGCCAGCTGCAGGCGCTGAAGGAGGCGATTTCGGACTGGGGGACGGTGGT
GATTGCGTACGAACCGGTGTGGGCGATTGGCACGGGCAAGGTGGCGACGC
CGGAACAGGCGGAAGAGGTGCACCAGGCGGTGCGTCAGTGGTTGGCGGAG
AACGTGTCGCCGCAGGTGGCGGCGGCTACCAGGATTCTTTATGGCGGCAG
TGTGTCGCCAGCGAATTGTGAACAGTTGGCAAAGCAGCCCAATATTGATG
GCTTTCTGGTGGGCGGCGCGAGCATGAAGCCGTCGTTCTTGGAGATCGTG
GACTCATACAAGACGGCGTTGGCGGGCGCCGTGTAG
back to top