Gcaud1467.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1467.t1
Unique NameGcaud1467.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length259
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1024_length_14934_cov_4.428485contigNODE_1024_length_14934_cov_4.428485:13396..14172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708274.1
Max annot lvl2759|Eukaryota
KEGG rclassRC00037,RC00039
KEGG koko:K13699
KEGG ReactionR09381
KEGG Pathwayko04923,map04923
Evalue1.15e-66
EggNOG OGsCOG0596@1|root,KOG4409@2759|Eukaryota
EC2.3.1.51
Description1-acylglycerol-3-phosphate O-acyltransferase activity
COG categoryEH
BRITEko00000,ko00001,ko01000,ko01002,ko01004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1467Gcaud1467Gracilaria caudata M_176_S67 malegeneNODE_1024_length_14934_cov_4.428485 13396..14172 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1467.t1.stop1Gcaud1467.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1024_length_14934_cov_4.428485 13396..13398 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1467.t1.CDS1Gcaud1467.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1024_length_14934_cov_4.428485 13396..14172 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1467.t1.exon1Gcaud1467.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1024_length_14934_cov_4.428485 13396..14172 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1467.t1.start1Gcaud1467.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1024_length_14934_cov_4.428485 14170..14172 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1467.t1Gcaud1467.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1024_length_14934_cov_4.428485 13396..14172 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1467.t1 ID=Gcaud1467.t1|Name=Gcaud1467.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=259bp
MSAAFWYRNFDHLVAAGYSVWAIDLLGWGRSSRPEFHGHSALDAIHWFLH
PLESVLDSLQLSTFTLVGHSLGAYLSVEFTKLHSHRVNHLVLLSPAAALR
PLPLRRALYFSLPPQSIVRRGGVLGFLLFSLKYPRHGSFVRDRLREYTYQ
LAMQRPPSGETAVRPIIRFRGLRRAECARPIAEHLRVFATPVRIVCGESD
SSIRVDDVVALFERMKRMGFRVQMHLLQGCDHCPMLEKPREFEAIMNAVM
KSTHRSVF*
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spliced messenger RNA

>Gcaud1467.t1 ID=Gcaud1467.t1|Name=Gcaud1467.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=777bp|location=Sequence derived from alignment at NODE_1024_length_14934_cov_4.428485:13396..14172- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCCGCGTTCTGGTATCGAAACTTCGACCATCTGGTGGCCGCCGG
CTACTCGGTGTGGGCCATCGATCTGCTCGGCTGGGGCCGCAGCTCTAGAC
CTGAGTTCCACGGTCATTCCGCTCTCGACGCTATTCACTGGTTTCTTCAC
CCCCTTGAGTCCGTGCTCGATTCGCTGCAACTGTCCACCTTCACGCTGGT
CGGACACAGTCTAGGCGCGTATCTGTCCGTGGAGTTCACCAAACTGCATT
CGCATCGCGTCAATCACCTGGTGTTACTCTCGCCCGCCGCCGCGCTGCGT
CCGCTCCCCCTGCGTCGCGCGCTGTACTTCTCGCTGCCGCCGCAAAGCAT
TGTGCGCCGCGGCGGCGTGCTTGGCTTCTTGCTGTTCTCACTCAAGTACC
CGCGTCATGGCTCGTTTGTGCGCGACCGTCTGCGCGAGTACACGTACCAG
CTGGCCATGCAACGTCCACCCAGCGGCGAAACGGCGGTGCGCCCCATCAT
TCGTTTCCGCGGGCTGCGGCGAGCCGAATGTGCACGTCCCATTGCGGAGC
ATCTGCGTGTGTTCGCCACGCCGGTGCGCATTGTGTGCGGCGAGAGCGAC
TCCTCGATTCGCGTGGACGATGTGGTGGCGTTGTTTGAACGCATGAAACG
CATGGGCTTCCGCGTGCAGATGCACTTGCTGCAGGGCTGCGATCACTGCC
CCATGCTGGAGAAGCCGCGCGAGTTCGAGGCCATCATGAACGCGGTGATG
AAGAGCACGCATCGCAGCGTGTTTTGA
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protein sequence of Gcaud1467.t1

>Gcaud1467.t1 ID=Gcaud1467.t1|Name=Gcaud1467.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=259bp
MSAAFWYRNFDHLVAAGYSVWAIDLLGWGRSSRPEFHGHSALDAIHWFLH
PLESVLDSLQLSTFTLVGHSLGAYLSVEFTKLHSHRVNHLVLLSPAAALR
PLPLRRALYFSLPPQSIVRRGGVLGFLLFSLKYPRHGSFVRDRLREYTYQ
LAMQRPPSGETAVRPIIRFRGLRRAECARPIAEHLRVFATPVRIVCGESD
SSIRVDDVVALFERMKRMGFRVQMHLLQGCDHCPMLEKPREFEAIMNAVM
KSTHRSVF*
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mRNA from alignment at NODE_1024_length_14934_cov_4.428485:13396..14172-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1467.t1 ID=Gcaud1467.t1|Name=Gcaud1467.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=777bp|location=Sequence derived from alignment at NODE_1024_length_14934_cov_4.428485:13396..14172- (Gracilaria caudata M_176_S67 male)
ATGTCCGCCGCGTTCTGGTATCGAAACTTCGACCATCTGGTGGCCGCCGG
CTACTCGGTGTGGGCCATCGATCTGCTCGGCTGGGGCCGCAGCTCTAGAC
CTGAGTTCCACGGTCATTCCGCTCTCGACGCTATTCACTGGTTTCTTCAC
CCCCTTGAGTCCGTGCTCGATTCGCTGCAACTGTCCACCTTCACGCTGGT
CGGACACAGTCTAGGCGCGTATCTGTCCGTGGAGTTCACCAAACTGCATT
CGCATCGCGTCAATCACCTGGTGTTACTCTCGCCCGCCGCCGCGCTGCGT
CCGCTCCCCCTGCGTCGCGCGCTGTACTTCTCGCTGCCGCCGCAAAGCAT
TGTGCGCCGCGGCGGCGTGCTTGGCTTCTTGCTGTTCTCACTCAAGTACC
CGCGTCATGGCTCGTTTGTGCGCGACCGTCTGCGCGAGTACACGTACCAG
CTGGCCATGCAACGTCCACCCAGCGGCGAAACGGCGGTGCGCCCCATCAT
TCGTTTCCGCGGGCTGCGGCGAGCCGAATGTGCACGTCCCATTGCGGAGC
ATCTGCGTGTGTTCGCCACGCCGGTGCGCATTGTGTGCGGCGAGAGCGAC
TCCTCGATTCGCGTGGACGATGTGGTGGCGTTGTTTGAACGCATGAAACG
CATGGGCTTCCGCGTGCAGATGCACTTGCTGCAGGGCTGCGATCACTGCC
CCATGCTGGAGAAGCCGCGCGAGTTCGAGGCCATCATGAACGCGGTGATG
AAGAGCACGCATCGCAGCGTGTTTTGA
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Coding sequence (CDS) from alignment at NODE_1024_length_14934_cov_4.428485:13396..14172-

>Gcaud1467.t1 ID=Gcaud1467.t1|Name=Gcaud1467.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=777bp|location=Sequence derived from alignment at NODE_1024_length_14934_cov_4.428485:13396..14172- (Gracilaria caudata M_176_S67 male)
ATGTCCGCCGCGTTCTGGTATCGAAACTTCGACCATCTGGTGGCCGCCGG
CTACTCGGTGTGGGCCATCGATCTGCTCGGCTGGGGCCGCAGCTCTAGAC
CTGAGTTCCACGGTCATTCCGCTCTCGACGCTATTCACTGGTTTCTTCAC
CCCCTTGAGTCCGTGCTCGATTCGCTGCAACTGTCCACCTTCACGCTGGT
CGGACACAGTCTAGGCGCGTATCTGTCCGTGGAGTTCACCAAACTGCATT
CGCATCGCGTCAATCACCTGGTGTTACTCTCGCCCGCCGCCGCGCTGCGT
CCGCTCCCCCTGCGTCGCGCGCTGTACTTCTCGCTGCCGCCGCAAAGCAT
TGTGCGCCGCGGCGGCGTGCTTGGCTTCTTGCTGTTCTCACTCAAGTACC
CGCGTCATGGCTCGTTTGTGCGCGACCGTCTGCGCGAGTACACGTACCAG
CTGGCCATGCAACGTCCACCCAGCGGCGAAACGGCGGTGCGCCCCATCAT
TCGTTTCCGCGGGCTGCGGCGAGCCGAATGTGCACGTCCCATTGCGGAGC
ATCTGCGTGTGTTCGCCACGCCGGTGCGCATTGTGTGCGGCGAGAGCGAC
TCCTCGATTCGCGTGGACGATGTGGTGGCGTTGTTTGAACGCATGAAACG
CATGGGCTTCCGCGTGCAGATGCACTTGCTGCAGGGCTGCGATCACTGCC
CCATGCTGGAGAAGCCGCGCGAGTTCGAGGCCATCATGAACGCGGTGATG
AAGAGCACGCATCGCAGCGTGTTTTGA
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