Gcaud1463.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1463.t1
Unique Name	Gcaud1463.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	575

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_566_length_21798_cov_4.589994	contig	NODE_566_length_21798_cov_4.589994:17764..19544 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	32264.tetur38g00040.1
Preferred name	EP400
PFAMs	EP400_N,HSA,Helicase_C,SNF2_N
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K11320,ko:K11661
GOs	GO:0000003,GO:0000123,GO:0000228,GO:0000785,GO:0000790,GO:0000812,GO:0000902,GO:0000904,GO:0002165,GO:0002376,GO:0002520,GO:0002682,GO:0002683,GO:0003002,GO:0003006,GO:0003674,GO:0003682,GO:0003712,GO:0003713,GO:0003823,GO:0003824,GO:0004402,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005794,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006928,GO:0006935,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007389,GO:0007399,GO:0007444,GO:0007447,GO:0008080,GO:0008094,GO:0008150,GO:0008152,GO:0008285,GO:0008593,GO:0009605,GO:0009653,GO:0009791,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0009996,GO:0010453,GO:0010454,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0012505,GO:0016043,GO:0016358,GO:0016407,GO:0016410,GO:0016458,GO:0016462,GO:0016569,GO:0016570,GO:0016573,GO:0016604,GO:0016607,GO:0016740,GO:0016746,GO:0016747,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019827,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0030030,GO:0030097,GO:0030154,GO:0030182,GO:0030718,GO:0031175,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032990,GO:0032991,GO:0034212,GO:0034728,GO:0035019,GO:0035206,GO:0035207,GO:0035220,GO:0035222,GO:0035267,GO:0035295,GO:0036098,GO:0036211,GO:0040011,GO:0042127,GO:0042221,GO:0042330,GO:0042623,GO:0042659,GO:0043044,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043543,GO:0043933,GO:0043967,GO:0043968,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0045595,GO:0045596,GO:0045747,GO:0045935,GO:0048468,GO:0048471,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048584,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051171,GO:0051173,GO:0051239,GO:0051252,GO:0051254,GO:0051276,GO:0051704,GO:0060147,GO:0060148,GO:0060255,GO:0060429,GO:0060964,GO:0060966,GO:0060968,GO:0061733,GO:0065007,GO:0070013,GO:0070603,GO:0070983,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0097346,GO:0097485,GO:0098727,GO:0120036,GO:0120039,GO:0140110,GO:1901564,GO:1902493,GO:1902494,GO:1902562,GO:1902680,GO:1903506,GO:1903508,GO:1904949,GO:1990234,GO:1990405,GO:2000112,GO:2000637,GO:2001141
Evalue	6.2e-19
EggNOG OGs	COG0553@1\|root,KOG0391@2759\|Eukaryota,38C85@33154\|Opisthokonta,3BH39@33208\|Metazoa,3CUF7@33213\|Bilateria,41V48@6656\|Arthropoda
Description	DNA- binding
COG category	KL
BRITE	ko00000,ko01000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1463	Gcaud1463	Gracilaria caudata M_176_S67 male	gene	NODE_566_length_21798_cov_4.589994 17764..19544 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1463.t1	Gcaud1463.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_566_length_21798_cov_4.589994 17764..19544 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1463.t1.start1	Gcaud1463.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_566_length_21798_cov_4.589994 17764..17766 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1463.t1.CDS1	Gcaud1463.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_566_length_21798_cov_4.589994 17764..19447 +
Gcaud1463.t1.CDS2	Gcaud1463.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_566_length_21798_cov_4.589994 19504..19544 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1463.t1.exon1	Gcaud1463.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_566_length_21798_cov_4.589994 17764..19447 +
Gcaud1463.t1.exon2	Gcaud1463.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_566_length_21798_cov_4.589994 19504..19544 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1463.t1.intron1	Gcaud1463.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_566_length_21798_cov_4.589994 19448..19503 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1463.t1.stop1	Gcaud1463.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_566_length_21798_cov_4.589994 19542..19544 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_566_length_21798_cov_4.589994:17764..19544+
coding sequence from alignment at NODE_566_length_21798_cov_4.589994:17764..19544+

mRNA sequence

>Gcaud1463.t1 ID=Gcaud1463.t1|Name=Gcaud1463.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=575bp
MKPPSRPRKRQRTTPSNSGSHSLEWTDAVSSLVERLDTIHSRFVTVRDDH
LRCVANIEERIEVHETASRVAAKVSTRSAVDEVSSRIHTTNAESTVEPTK
DESRAPPSPLALLLEGEPPEKALREQSIIARAQAINRKNSELARERLPKQ
PEPMRNKTLHDYFLDEAAWLATDFIGERKWKMQMARKIAKMVVQYHNQQR
RREARAQVEEKQRIRKLATSIARDVSKFWRQIGEIAEYRASLKTKAEEDK
ERRSKLRDLLQKTEAFSSELASTLHFHPTANELSDTHHVVKQVTFGERRA
PDQDVAKAEESPLHSQGPRGRSTNSQASATARVANSEPNSNGTMSDSEFS
SSMSVCAEGHTEAFDDETTMAMAEAEEEKDPNEISMLQSQAGVPLKELLR
SQGIDPEKYFTHKNLSVPSERNDSDSDVSEEPSWDESVDDEETIRAAETE
DAPDVYEGQKLAEEAAAGIEEILRAQGIDPDEYRADQTNYLKPRNESDVS
MPSEPKPKNGLEDLSRAGAEHRDKSETQSATDGKATLSSTAVPVKDMELE
GKKNPLVVENYGLPLEHYFKLARH*

spliced messenger RNA

>Gcaud1463.t1 ID=Gcaud1463.t1|Name=Gcaud1463.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1725bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:17764..19544+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCCCCTTCGAGACCAAGGAAGCGCCAGCGGACCACCCCTTCAAA
CTCAGGTTCCCATTCTTTAGAATGGACAGATGCAGTCAGTTCACTTGTGG
AGCGTCTGGATACAATTCACTCCCGGTTTGTCACTGTCCGCGATGATCAC
CTCCGATGTGTAGCGAATATCGAAGAACGAATAGAAGTGCATGAAACTGC
ATCTAGGGTAGCCGCCAAAGTTTCAACTCGGTCAGCTGTTGATGAGGTTT
CATCTCGAATCCATACCACCAACGCTGAATCAACAGTAGAGCCTACCAAG
GATGAATCGCGAGCCCCGCCCTCTCCTCTGGCGCTTCTTCTCGAAGGCGA
GCCTCCGGAAAAAGCCCTTCGGGAGCAGTCGATCATAGCCCGGGCGCAGG
CCATTAATCGAAAGAACTCCGAACTAGCTCGGGAACGTCTTCCGAAACAA
CCCGAACCTATGCGAAATAAAACTCTTCATGATTATTTCCTTGACGAGGC
AGCCTGGCTAGCGACGGATTTCATAGGAGAACGCAAGTGGAAGATGCAGA
TGGCTAGAAAAATTGCGAAGATGGTCGTGCAGTACCACAACCAGCAGCGG
CGTCGCGAAGCTAGAGCTCAGGTTGAGGAGAAACAACGAATCCGAAAGCT
TGCAACATCGATAGCTAGGGATGTATCAAAGTTTTGGAGGCAGATTGGAG
AAATTGCTGAGTATCGAGCTTCTCTGAAGACGAAGGCGGAGGAGGACAAG
GAACGGAGATCAAAGCTGAGAGATCTGCTTCAAAAGACAGAGGCTTTTTC
ATCAGAGCTTGCATCAACTCTGCATTTTCACCCCACAGCTAATGAGCTTA
GCGacacccaccatgtggtaaagcaagtaacctttggtgaacggcgtgcc
ccggaccaagatgtggctaaagcagaggagagcccattgCACAGTCAAGG
CCCCCGAGGTCGAAGTACGAATTCCCAAGCGTCAGCTACCGCTCGCGTTG
CAAACTCTGAGCCGAATTCCAATGGTACAATGTCAGATTCAGAGTTTTCG
AGCTCCATGAGTGTATGCGCGGAGGGACACACGGAAGCGTTCGATGATGA
GACGACCATGGCAATGGCCGAGGCCGAAGAAGAGAAAGATCCGAACGAGA
TTTCAATGCTTCAGAGCCAAGCTGGTGTGCCTCTGAAAGAGTTGCTGAGA
TCGCAAGGTATTGACCCGGAGAAATACTTCACGCACAAGAACCTATCCGT
GCCGTCTGAGCGAAACGATAGTGATTCCGATGTAAGCGAAGAACCATCAT
GGGATGAGAGTGTAGACGATGAAGAGACGATTCGAGCAGCAGAAACTGAA
GACGCTCCGGATGTGTATGAAGGTCAAAAACTTGCCGAAGAAGCTGCGGC
TGGAATTGAAGAGATTTTGCGGGCCCAAGGTATTGATCCTGATGAATACA
GGGCTGATCAAACCAATTATCTCAAACCCCGCAACGAATCAGATGTATCG
ATGCCATCGGAGCCGAAACCGAAAAACGGCTTGGAAGATCTGTCCAGAGC
GGGGGCTGAACATCGGGATAAGAGCGAAACGCAATCAGCCACTGATGGAA
AGGCTACTCTTTCATCTACGGCTGTGCCTGTAAAGGACATGGAATTGGAG
GGAAAGAAGAACCCACTTGTAGTGGAGAATTATGGACTGCCGCTCGAACA
CTATTTCAAACTCGCTAGGCACTGA

protein sequence of Gcaud1463.t1

>Gcaud1463.t1 ID=Gcaud1463.t1|Name=Gcaud1463.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=575bp
MKPPSRPRKRQRTTPSNSGSHSLEWTDAVSSLVERLDTIHSRFVTVRDDH
LRCVANIEERIEVHETASRVAAKVSTRSAVDEVSSRIHTTNAESTVEPTK
DESRAPPSPLALLLEGEPPEKALREQSIIARAQAINRKNSELARERLPKQ
PEPMRNKTLHDYFLDEAAWLATDFIGERKWKMQMARKIAKMVVQYHNQQR
RREARAQVEEKQRIRKLATSIARDVSKFWRQIGEIAEYRASLKTKAEEDK
ERRSKLRDLLQKTEAFSSELASTLHFHPTANELSDTHHVVKQVTFGERRA
PDQDVAKAEESPLHSQGPRGRSTNSQASATARVANSEPNSNGTMSDSEFS
SSMSVCAEGHTEAFDDETTMAMAEAEEEKDPNEISMLQSQAGVPLKELLR
SQGIDPEKYFTHKNLSVPSERNDSDSDVSEEPSWDESVDDEETIRAAETE
DAPDVYEGQKLAEEAAAGIEEILRAQGIDPDEYRADQTNYLKPRNESDVS
MPSEPKPKNGLEDLSRAGAEHRDKSETQSATDGKATLSSTAVPVKDMELE
GKKNPLVVENYGLPLEHYFKLARH*

mRNA from alignment at NODE_566_length_21798_cov_4.589994:17764..19544+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1463.t1 ID=Gcaud1463.t1|Name=Gcaud1463.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1781bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:17764..19544+ (Gracilaria caudata M_176_S67 male)
ATGAAGCCCCCTTCGAGACCAAGGAAGCGCCAGCGGACCACCCCTTCAAA
CTCAGGTTCCCATTCTTTAGAATGGACAGATGCAGTCAGTTCACTTGTGG
AGCGTCTGGATACAATTCACTCCCGGTTTGTCACTGTCCGCGATGATCAC
CTCCGATGTGTAGCGAATATCGAAGAACGAATAGAAGTGCATGAAACTGC
ATCTAGGGTAGCCGCCAAAGTTTCAACTCGGTCAGCTGTTGATGAGGTTT
CATCTCGAATCCATACCACCAACGCTGAATCAACAGTAGAGCCTACCAAG
GATGAATCGCGAGCCCCGCCCTCTCCTCTGGCGCTTCTTCTCGAAGGCGA
GCCTCCGGAAAAAGCCCTTCGGGAGCAGTCGATCATAGCCCGGGCGCAGG
CCATTAATCGAAAGAACTCCGAACTAGCTCGGGAACGTCTTCCGAAACAA
CCCGAACCTATGCGAAATAAAACTCTTCATGATTATTTCCTTGACGAGGC
AGCCTGGCTAGCGACGGATTTCATAGGAGAACGCAAGTGGAAGATGCAGA
TGGCTAGAAAAATTGCGAAGATGGTCGTGCAGTACCACAACCAGCAGCGG
CGTCGCGAAGCTAGAGCTCAGGTTGAGGAGAAACAACGAATCCGAAAGCT
TGCAACATCGATAGCTAGGGATGTATCAAAGTTTTGGAGGCAGATTGGAG
AAATTGCTGAGTATCGAGCTTCTCTGAAGACGAAGGCGGAGGAGGACAAG
GAACGGAGATCAAAGCTGAGAGATCTGCTTCAAAAGACAGAGGCTTTTTC
ATCAGAGCTTGCATCAACTCTGCATTTTCACCCCACAGCTAATGAGCTTA
GCGacacccaccatgtggtaaagcaagtaacctttggtgaacggcgtgcc
ccggaccaagatgtggctaaagcagaggagagcccattgCACAGTCAAGG
CCCCCGAGGTCGAAGTACGAATTCCCAAGCGTCAGCTACCGCTCGCGTTG
CAAACTCTGAGCCGAATTCCAATGGTACAATGTCAGATTCAGAGTTTTCG
AGCTCCATGAGTGTATGCGCGGAGGGACACACGGAAGCGTTCGATGATGA
GACGACCATGGCAATGGCCGAGGCCGAAGAAGAGAAAGATCCGAACGAGA
TTTCAATGCTTCAGAGCCAAGCTGGTGTGCCTCTGAAAGAGTTGCTGAGA
TCGCAAGGTATTGACCCGGAGAAATACTTCACGCACAAGAACCTATCCGT
GCCGTCTGAGCGAAACGATAGTGATTCCGATGTAAGCGAAGAACCATCAT
GGGATGAGAGTGTAGACGATGAAGAGACGATTCGAGCAGCAGAAACTGAA
GACGCTCCGGATGTGTATGAAGGTCAAAAACTTGCCGAAGAAGCTGCGGC
TGGAATTGAAGAGATTTTGCGGGCCCAAGGTATTGATCCTGATGAATACA
GGGCTGATCAAACCAATTATCTCAAACCCCGCAACGAATCAGATGTATCG
ATGCCATCGGAGCCGAAACCGAAAAACGGCTTGGAAGATCTGTCCAGAGC
GGGGGCTGAACATCGGGATAAGAGCGAAACGCAATCAGCCACTGATGGAA
AGGCTACTCTTTCATCTACGGCTGTGCCTGTAAAGGACATGGAATTGGAG
GGAAAGAAGAACCCACTTGTAGTGGAGAATTATGGTTCAACGAACGGAGA
TTCAGCGAAGACCCAATGTGATAGTATTTGCTCTCAACAGGACTGCCGCT
CGAACACTATTTCAAACTCGCTAGGCACTGA

Coding sequence (CDS) from alignment at NODE_566_length_21798_cov_4.589994:17764..19544+

>Gcaud1463.t1 ID=Gcaud1463.t1|Name=Gcaud1463.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1725bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:17764..19544+ (Gracilaria caudata M_176_S67 male)
ATGAAGCCCCCTTCGAGACCAAGGAAGCGCCAGCGGACCACCCCTTCAAA
CTCAGGTTCCCATTCTTTAGAATGGACAGATGCAGTCAGTTCACTTGTGG
AGCGTCTGGATACAATTCACTCCCGGTTTGTCACTGTCCGCGATGATCAC
CTCCGATGTGTAGCGAATATCGAAGAACGAATAGAAGTGCATGAAACTGC
ATCTAGGGTAGCCGCCAAAGTTTCAACTCGGTCAGCTGTTGATGAGGTTT
CATCTCGAATCCATACCACCAACGCTGAATCAACAGTAGAGCCTACCAAG
GATGAATCGCGAGCCCCGCCCTCTCCTCTGGCGCTTCTTCTCGAAGGCGA
GCCTCCGGAAAAAGCCCTTCGGGAGCAGTCGATCATAGCCCGGGCGCAGG
CCATTAATCGAAAGAACTCCGAACTAGCTCGGGAACGTCTTCCGAAACAA
CCCGAACCTATGCGAAATAAAACTCTTCATGATTATTTCCTTGACGAGGC
AGCCTGGCTAGCGACGGATTTCATAGGAGAACGCAAGTGGAAGATGCAGA
TGGCTAGAAAAATTGCGAAGATGGTCGTGCAGTACCACAACCAGCAGCGG
CGTCGCGAAGCTAGAGCTCAGGTTGAGGAGAAACAACGAATCCGAAAGCT
TGCAACATCGATAGCTAGGGATGTATCAAAGTTTTGGAGGCAGATTGGAG
AAATTGCTGAGTATCGAGCTTCTCTGAAGACGAAGGCGGAGGAGGACAAG
GAACGGAGATCAAAGCTGAGAGATCTGCTTCAAAAGACAGAGGCTTTTTC
ATCAGAGCTTGCATCAACTCTGCATTTTCACCCCACAGCTAATGAGCTTA
GCGacacccaccatgtggtaaagcaagtaacctttggtgaacggcgtgcc
ccggaccaagatgtggctaaagcagaggagagcccattgCACAGTCAAGG
CCCCCGAGGTCGAAGTACGAATTCCCAAGCGTCAGCTACCGCTCGCGTTG
CAAACTCTGAGCCGAATTCCAATGGTACAATGTCAGATTCAGAGTTTTCG
AGCTCCATGAGTGTATGCGCGGAGGGACACACGGAAGCGTTCGATGATGA
GACGACCATGGCAATGGCCGAGGCCGAAGAAGAGAAAGATCCGAACGAGA
TTTCAATGCTTCAGAGCCAAGCTGGTGTGCCTCTGAAAGAGTTGCTGAGA
TCGCAAGGTATTGACCCGGAGAAATACTTCACGCACAAGAACCTATCCGT
GCCGTCTGAGCGAAACGATAGTGATTCCGATGTAAGCGAAGAACCATCAT
GGGATGAGAGTGTAGACGATGAAGAGACGATTCGAGCAGCAGAAACTGAA
GACGCTCCGGATGTGTATGAAGGTCAAAAACTTGCCGAAGAAGCTGCGGC
TGGAATTGAAGAGATTTTGCGGGCCCAAGGTATTGATCCTGATGAATACA
GGGCTGATCAAACCAATTATCTCAAACCCCGCAACGAATCAGATGTATCG
ATGCCATCGGAGCCGAAACCGAAAAACGGCTTGGAAGATCTGTCCAGAGC
GGGGGCTGAACATCGGGATAAGAGCGAAACGCAATCAGCCACTGATGGAA
AGGCTACTCTTTCATCTACGGCTGTGCCTGTAAAGGACATGGAATTGGAG
GGAAAGAAGAACCCACTTGTAGTGGAGAATTATGGACTGCCGCTCGAACA
CTATTTCAAACTCGCTAGGCACTGA