Gcaud1458.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1458.t1
Unique Name	Gcaud1458.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	412

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_566_length_21798_cov_4.589994	contig	NODE_566_length_21798_cov_4.589994:10178..11413 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705074.1
Preferred name	PSMC5
PFAMs	AAA
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03066
KEGG Pathway	ko03050,ko05169,map03050,map05169
KEGG Module	M00341
GOs	GO:0000166,GO:0000428,GO:0000502,GO:0001664,GO:0003674,GO:0003824,GO:0004175,GO:0004176,GO:0005102,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0005737,GO:0005829,GO:0005838,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006401,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007088,GO:0007346,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008540,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010646,GO:0010941,GO:0010965,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016075,GO:0016234,GO:0016462,GO:0016579,GO:0016591,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017025,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019904,GO:0019941,GO:0022607,GO:0022624,GO:0023051,GO:0030071,GO:0030162,GO:0030163,GO:0030433,GO:0030554,GO:0030880,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031410,GO:0031531,GO:0031595,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032270,GO:0032436,GO:0032553,GO:0032555,GO:0032559,GO:0032784,GO:0032786,GO:0032806,GO:0032968,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033554,GO:0034243,GO:0034515,GO:0034622,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0034976,GO:0035639,GO:0036094,GO:0036211,GO:0036402,GO:0036503,GO:0042176,GO:0042221,GO:0042623,GO:0042802,GO:0043067,GO:0043069,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043248,GO:0043254,GO:0043412,GO:0043433,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044456,GO:0044464,GO:0044798,GO:0045202,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045892,GO:0045893,GO:0045898,GO:0045899,GO:0045931,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050804,GO:0050896,GO:0051090,GO:0051091,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051427,GO:0051428,GO:0051603,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0055029,GO:0060255,GO:0060260,GO:0060261,GO:0060548,GO:0061136,GO:0061695,GO:0062033,GO:0065003,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0070651,GO:0070682,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090068,GO:0090083,GO:0090261,GO:0090304,GO:0090575,GO:0097159,GO:0097367,GO:0097708,GO:0098794,GO:0099170,GO:0099177,GO:0099574,GO:0099576,GO:0140096,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1902554,GO:1902679,GO:1902680,GO:1902911,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1903507,GO:1903508,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990234,GO:2000112,GO:2000113,GO:2000142,GO:2000144,GO:2001141,GO:2001252
Evalue	6.66e-210
EggNOG OGs	COG0554@1\|root,KOG0728@2759\|Eukaryota
Description	proteasome-activating ATPase activity
COG category	O
BRITE	ko00000,ko00001,ko00002,ko03051

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1458	Gcaud1458	Gracilaria caudata M_176_S67 male	gene	NODE_566_length_21798_cov_4.589994 10178..11413 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1458.t1.start1	Gcaud1458.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_566_length_21798_cov_4.589994 10178..10180 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1458.t1.CDS1	Gcaud1458.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_566_length_21798_cov_4.589994 10178..11413 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1458.t1.exon1	Gcaud1458.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_566_length_21798_cov_4.589994 10178..11413 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1458.t1.stop1	Gcaud1458.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_566_length_21798_cov_4.589994 11411..11413 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1458.t1	Gcaud1458.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_566_length_21798_cov_4.589994 10178..11413 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_566_length_21798_cov_4.589994:10178..11413+
coding sequence from alignment at NODE_566_length_21798_cov_4.589994:10178..11413+

mRNA sequence

>Gcaud1458.t1 ID=Gcaud1458.t1|Name=Gcaud1458.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=412bp
MATADAMKTGVPTTMASGLSIGLKSYYQTKMDQLESRIRDKQENLRRLQA
QRNELNSRVRDLREELQLLQEPGGYVGEVVKIMGRKKVLVKVHPEGKYIV
DVDSSIDITKLSTTARVALRNDSYTLYKVLPSKVDPLVSLMRVENVPDST
YEMIGGLDEQLKAIREVIELPVLHPELFDALGIAQPKGVLLYGPPGTGKT
LLARAVAHHTKCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIF
MDEIDSIGSTRMNSGGSGGGDSEVQRTMLELLNQLDGFEATKNIKVLMAT
NRLDILDSALLRPGRIDRKIEFPAPNEEARKQILKIHSRKMNLMRGIDLG
KIAKKMPGASGAETKAVCTEAGMFALRERRLYVQQEDFELAVAKVMRKDR
EASESLRRLWK*

spliced messenger RNA

>Gcaud1458.t1 ID=Gcaud1458.t1|Name=Gcaud1458.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1236bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:10178..11413+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACCGCCGACGCCATGAAAACCGGTGTTCCGACCACAATGGCTTC
TGGATTGAGCATTGGTTTGAAGTCTTACTATCAAACAAAGATGGATCAGC
TCGAAAGCCGAATCCGTGACAAACAAGAAAACCTGCGTCGTCTTCAAGCG
CAGCGCAATGAACTTAATTCGAGAGTTCGCGATCTACGCGAGGAATTGCA
ATTACTGCAGGAACCAGGTGGTTATGTCGGTGAAGTCGTTAAGATAATGG
GTAGGAAAAAGGTTCTTGTTAAAGTGCATCCTGAAGGCAAATACATTGTT
GATGTTGACAGTTCAATCGATATCACAAAGCTTTCAACAACAGCCCGCGT
TGCCCTGAGAAACGATTCCTATACTCTTTACAAGGTGCTTCCGAGCAAAG
TCGATCCGTTGGTTTCGCTCATGAGGGTGGAAAATGTGCCTGATTCCACT
TACGAAATGATTGGTGGTCTGGATGAACAGCTTAAAGCTATTCGCGAGGT
CATTGAACTTCCTGTTTTGCATCCGGAGCTGTTTGATGCCCTTGGTATCG
CTCAGCCCAAGGGGGTGCTTTTATACGGCCCCCCCGGAACAGGAAAGACA
CTTTTGGCTCGTGCTGTTGCTCATCACACTAAATGCACGTTTATTCGTGT
CTCGGGTTCGGAGCTCGTTCAGAAGTACATCGGAGAAGGTAGTCGAATGG
TTCGTGAACTTTTTGTTATGGCACGCGAACATGCACCGTCCATTATTTTT
ATGGATGAGATTGATTCCATTGGTTCTACTCGGATGAATAGCGGTGGAAG
TGGTGGTGGTGATTCTGAAGTGCAGAGAACTATGCTTGAGTTGCTCAATC
AATTAGACGGTTTCGAAGCAACCAAGAATATTAAGGTTCTGATGGCCACA
AACAGGCTAGATATTCTTGATTCTGCACTTCTCAGGCCTGGAAGAATTGA
CAGAAAGATTGAATTCCCTGCCCCCAACGAGGAGGCTCGAAAGCAAATCC
TCAAGATCCACTCGCGGAAAATGAATCTCATGCGTGGAATCGATCTCGGA
AAAATTGCCAAGAAGATGCCAGGCGCTTCTGGAGCCGAGACAAAGGCGGT
ATGCACTGAAGCTGGTATGTTTGCTCTTCGGGAACGTCGTCTATATGTGC
AACAGGAAGATTTTGAACTTGCAGTGGCAAAGGTAATGCGAAAAGACCGA
GAGGCTAGCGAGTCGTTACGGAGGTTGTGGAAGTAA

protein sequence of Gcaud1458.t1

>Gcaud1458.t1 ID=Gcaud1458.t1|Name=Gcaud1458.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=412bp
MATADAMKTGVPTTMASGLSIGLKSYYQTKMDQLESRIRDKQENLRRLQA
QRNELNSRVRDLREELQLLQEPGGYVGEVVKIMGRKKVLVKVHPEGKYIV
DVDSSIDITKLSTTARVALRNDSYTLYKVLPSKVDPLVSLMRVENVPDST
YEMIGGLDEQLKAIREVIELPVLHPELFDALGIAQPKGVLLYGPPGTGKT
LLARAVAHHTKCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIF
MDEIDSIGSTRMNSGGSGGGDSEVQRTMLELLNQLDGFEATKNIKVLMAT
NRLDILDSALLRPGRIDRKIEFPAPNEEARKQILKIHSRKMNLMRGIDLG
KIAKKMPGASGAETKAVCTEAGMFALRERRLYVQQEDFELAVAKVMRKDR
EASESLRRLWK*

mRNA from alignment at NODE_566_length_21798_cov_4.589994:10178..11413+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1458.t1 ID=Gcaud1458.t1|Name=Gcaud1458.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1236bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:10178..11413+ (Gracilaria caudata M_176_S67 male)
ATGGCAACCGCCGACGCCATGAAAACCGGTGTTCCGACCACAATGGCTTC
TGGATTGAGCATTGGTTTGAAGTCTTACTATCAAACAAAGATGGATCAGC
TCGAAAGCCGAATCCGTGACAAACAAGAAAACCTGCGTCGTCTTCAAGCG
CAGCGCAATGAACTTAATTCGAGAGTTCGCGATCTACGCGAGGAATTGCA
ATTACTGCAGGAACCAGGTGGTTATGTCGGTGAAGTCGTTAAGATAATGG
GTAGGAAAAAGGTTCTTGTTAAAGTGCATCCTGAAGGCAAATACATTGTT
GATGTTGACAGTTCAATCGATATCACAAAGCTTTCAACAACAGCCCGCGT
TGCCCTGAGAAACGATTCCTATACTCTTTACAAGGTGCTTCCGAGCAAAG
TCGATCCGTTGGTTTCGCTCATGAGGGTGGAAAATGTGCCTGATTCCACT
TACGAAATGATTGGTGGTCTGGATGAACAGCTTAAAGCTATTCGCGAGGT
CATTGAACTTCCTGTTTTGCATCCGGAGCTGTTTGATGCCCTTGGTATCG
CTCAGCCCAAGGGGGTGCTTTTATACGGCCCCCCCGGAACAGGAAAGACA
CTTTTGGCTCGTGCTGTTGCTCATCACACTAAATGCACGTTTATTCGTGT
CTCGGGTTCGGAGCTCGTTCAGAAGTACATCGGAGAAGGTAGTCGAATGG
TTCGTGAACTTTTTGTTATGGCACGCGAACATGCACCGTCCATTATTTTT
ATGGATGAGATTGATTCCATTGGTTCTACTCGGATGAATAGCGGTGGAAG
TGGTGGTGGTGATTCTGAAGTGCAGAGAACTATGCTTGAGTTGCTCAATC
AATTAGACGGTTTCGAAGCAACCAAGAATATTAAGGTTCTGATGGCCACA
AACAGGCTAGATATTCTTGATTCTGCACTTCTCAGGCCTGGAAGAATTGA
CAGAAAGATTGAATTCCCTGCCCCCAACGAGGAGGCTCGAAAGCAAATCC
TCAAGATCCACTCGCGGAAAATGAATCTCATGCGTGGAATCGATCTCGGA
AAAATTGCCAAGAAGATGCCAGGCGCTTCTGGAGCCGAGACAAAGGCGGT
ATGCACTGAAGCTGGTATGTTTGCTCTTCGGGAACGTCGTCTATATGTGC
AACAGGAAGATTTTGAACTTGCAGTGGCAAAGGTAATGCGAAAAGACCGA
GAGGCTAGCGAGTCGTTACGGAGGTTGTGGAAGTAA

Coding sequence (CDS) from alignment at NODE_566_length_21798_cov_4.589994:10178..11413+

>Gcaud1458.t1 ID=Gcaud1458.t1|Name=Gcaud1458.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1236bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:10178..11413+ (Gracilaria caudata M_176_S67 male)
ATGGCAACCGCCGACGCCATGAAAACCGGTGTTCCGACCACAATGGCTTC
TGGATTGAGCATTGGTTTGAAGTCTTACTATCAAACAAAGATGGATCAGC
TCGAAAGCCGAATCCGTGACAAACAAGAAAACCTGCGTCGTCTTCAAGCG
CAGCGCAATGAACTTAATTCGAGAGTTCGCGATCTACGCGAGGAATTGCA
ATTACTGCAGGAACCAGGTGGTTATGTCGGTGAAGTCGTTAAGATAATGG
GTAGGAAAAAGGTTCTTGTTAAAGTGCATCCTGAAGGCAAATACATTGTT
GATGTTGACAGTTCAATCGATATCACAAAGCTTTCAACAACAGCCCGCGT
TGCCCTGAGAAACGATTCCTATACTCTTTACAAGGTGCTTCCGAGCAAAG
TCGATCCGTTGGTTTCGCTCATGAGGGTGGAAAATGTGCCTGATTCCACT
TACGAAATGATTGGTGGTCTGGATGAACAGCTTAAAGCTATTCGCGAGGT
CATTGAACTTCCTGTTTTGCATCCGGAGCTGTTTGATGCCCTTGGTATCG
CTCAGCCCAAGGGGGTGCTTTTATACGGCCCCCCCGGAACAGGAAAGACA
CTTTTGGCTCGTGCTGTTGCTCATCACACTAAATGCACGTTTATTCGTGT
CTCGGGTTCGGAGCTCGTTCAGAAGTACATCGGAGAAGGTAGTCGAATGG
TTCGTGAACTTTTTGTTATGGCACGCGAACATGCACCGTCCATTATTTTT
ATGGATGAGATTGATTCCATTGGTTCTACTCGGATGAATAGCGGTGGAAG
TGGTGGTGGTGATTCTGAAGTGCAGAGAACTATGCTTGAGTTGCTCAATC
AATTAGACGGTTTCGAAGCAACCAAGAATATTAAGGTTCTGATGGCCACA
AACAGGCTAGATATTCTTGATTCTGCACTTCTCAGGCCTGGAAGAATTGA
CAGAAAGATTGAATTCCCTGCCCCCAACGAGGAGGCTCGAAAGCAAATCC
TCAAGATCCACTCGCGGAAAATGAATCTCATGCGTGGAATCGATCTCGGA
AAAATTGCCAAGAAGATGCCAGGCGCTTCTGGAGCCGAGACAAAGGCGGT
ATGCACTGAAGCTGGTATGTTTGCTCTTCGGGAACGTCGTCTATATGTGC
AACAGGAAGATTTTGAACTTGCAGTGGCAAAGGTAATGCGAAAAGACCGA
GAGGCTAGCGAGTCGTTACGGAGGTTGTGGAAGTAA