Gcaud1454.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1454.t1
Unique Name	Gcaud1454.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	637

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_566_length_21798_cov_4.589994	contig	NODE_566_length_21798_cov_4.589994:28..1938 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMH064CT
PFAMs	DEP,DUF547
Max annot lvl	2759\|Eukaryota
Evalue	6.58e-125
EggNOG OGs	28JT7@1\|root,2QS72@2759\|Eukaryota
Description	protein disulfide oxidoreductase activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1454	Gcaud1454	Gracilaria caudata M_176_S67 male	gene	NODE_566_length_21798_cov_4.589994 28..1938 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1454.t1.start1	Gcaud1454.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_566_length_21798_cov_4.589994 28..30 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1454.t1.CDS1	Gcaud1454.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_566_length_21798_cov_4.589994 28..1938 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1454.t1.exon1	Gcaud1454.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_566_length_21798_cov_4.589994 28..1938 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1454.t1.stop1	Gcaud1454.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_566_length_21798_cov_4.589994 1936..1938 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1454.t1	Gcaud1454.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_566_length_21798_cov_4.589994 28..1938 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_566_length_21798_cov_4.589994:28..1938+
coding sequence from alignment at NODE_566_length_21798_cov_4.589994:28..1938+

mRNA sequence

>Gcaud1454.t1 ID=Gcaud1454.t1|Name=Gcaud1454.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=637bp
MYPKTGRKRKALEQVVPGVVPDRSSQFAVYSQSSAAAASNPFENEHYPIP
DFQRVYTQMRDPKNGLPLADRRWRLSTYSKCFIGEEAVQWMVDNLALDRK
AAVETGQKLMDAGIMHHVTHSEPFSDAYFFYRFQEDDDGNVLNMKRIWDS
NIPTRHAVVVAKDLLTRLAFLCEEHRRRILEADASSDKIQTPKSAHMILA
SQPVTPLLDPTTRSDPAESISSPSLFRSLSTPRLPSSGSPMLFSPSLQRR
ASQPRPPKQKDDDVDYSSLAKSEQFRKYSLAAAELQHVQLVALNQDERIA
FFVNVYNALCLHAHVVHGHPNSVFRRYVFFRVLSYRVAGLDMSLDDIEHG
ILRGNKKPPMLKFIQQLRPSDPKCQHVLTNRDGRIHFVISAGTKSDPPIR
ILDGENVQEELDDASVEFLSCSVKVDLEKRIVTLPRIFYWYSDDFPSPER
KLLLWIVSFLQVETSHQLVNILNDDGPLPTLMYADFDWSNPEARFNASVV
RRKRRRLERERDLDDGQQDAIDLSFQMPIGGISSILPAQSVSNEDLFKNN
IAYLPSTLPANGQNEAQQAQAIHNSIAIAGARSEEDSSKRLTPETMNVRT
QPETPSARGNENASSANTAAAGAAAAATTAAAAATT*

spliced messenger RNA

>Gcaud1454.t1 ID=Gcaud1454.t1|Name=Gcaud1454.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1911bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:28..1938+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATCCCAAGACGGGGCGCAAGCGAAAGGCACTGGAGCAGGTAGTGCC
TGGTGTCGTTCCTGACCGCAGTTCTCAGTTTGCTGTGTACTCCCAGTCCT
CTGCCGCGGCTGCTTCGAACCCCTTCGAGAACGAGCATTACCCCATCCCA
GACTTCCAACGAGTCTATACCCAAATGCGTGATCCAAAGAATGGCCTGCC
ACTGGCAGACCGTCGCTGGAGACTCAGCACGTACTCCAAGTGCTTCATTG
GCGAAGAAGCCGTGCAATGGATGGTTGACAACCTTGCTCTAGATCGAAAG
GCTGCAGTAGAAACCGGACAAAAGCTTATGGACGCTGGAATCATGCACCA
TGTTACCCATTCAGAACCGTTTTCCGACGCCTACTTTTTCTACCGCTTTC
AAGAAGATGACGATGGAAATGTTCTAAATATGAAGCGAATCTGGGATTCT
AATATACCAACTCGACACGCTGTCGTCGTTGCCAAAGATCTTCTTACGCG
TTTGGCTTTCCTATGCGAAGAACATCGTCGACGAATTCTCGAAGCGGACG
CCAGTTCTGACAAAATTCAGACACCCAAGTCCGCCCACATGATCCTTGCC
TCTCAGCCTGTAACCCCTCTTTTAGATCCCACCACTCGCAGTGACCCTGC
AGAGTCAATATCCTCGCCCAGCTTATTTCGATCGTTATCAACTCCACGCT
TACCTTCCTCAGGATCTCCCATGTTATTCTCACCTTCCCTACAAAGACGT
GCATCTCAACCAAGACCCCCGAAGCAAAAGGACGATGACGTTGACTACTC
ATCTCTGGCCAAGAGCGAACAATTCCGAAAGTATTCTTTGGCTGCAGCGG
AATTGCAGCACGTTCAACTTGTTGCACTTAATCAAGACGAAAGAATTGCG
TTTTTCGTGAATGTGTACAATGCACTATGTCTCCATGCGCACGTTGTCCA
CGGACATCCGAACAGTGTGTTTCGTCGCTATGTCTTTTTCCGCGTGCTGT
CGTATAGGGTGGCTGGATTAGACATGTCTCTGGATGACATTGAACATGGT
ATACTGAGGGGGAATAAGAAACCTCCTATGTTGAAGTTTATCCAGCAGCT
AAGACCTTCGGACCCTAAATGTCAACATGTGCTTACAAATCGAGACGGTC
GCATTCATTTTGTCATCTCTGCTGGTACAAAGTCTGATCCGCCTATTCGT
ATCCTTGACGGAGAAAATGTGCAAGAAGAGCTCGATGACGCGTCCGTTGA
GTTTCTGAGTTGCTCGGTTAAGGTCGACCTTGAGAAGAGAATTGTTACCC
TTCCACGCATCTTTTATTGGTACTCTGACGATTTTCCTAGTCCAGAAAGG
AAACTTTTGCTGTGGATAGTGTCTTTTCTTCAAGTTGAGACATCTCACCA
GCTTGTTAACATACTTAATGATGATGGCCCGTTACCTACATTGATGTATG
CGGATTTTGACTGGTCAAACCCGGAAGCAAGATTCAACGCTTCTGTAGTA
CGAAGAAAGCGGCGAAGGCTGGAGAGGGAAAGGGACCTCGACGACGGGCA
GCAAGATGCCATTGACCTTAGCTTTCAAATGCCAATTGGGGGTATATCTT
CCATACTCCCTGCACAGTCTGTCAGCAACGAGGACTTGTTTAAGAATAAC
ATTGCTTACTTACCATCTACACTTCCAGCAAATGGACAGAATGAAGCTCA
GCAAGCACAGGCTATTCACAACAGCATTGCAATCGCGGGAGCTAGATCTG
AGGAAGATTCATCTAAAAGGTTGACTCCGGAAACTATGAACGTCAGAACT
CAACCAGAGACTCCAAGCGCCAGAGGTAATGAAAACgcgtccagcgcaaa
cacagcggcggctggtgcggctgccgctgcgactactgctgctgctgctg
ctactacataa

protein sequence of Gcaud1454.t1

>Gcaud1454.t1 ID=Gcaud1454.t1|Name=Gcaud1454.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=637bp
MYPKTGRKRKALEQVVPGVVPDRSSQFAVYSQSSAAAASNPFENEHYPIP
DFQRVYTQMRDPKNGLPLADRRWRLSTYSKCFIGEEAVQWMVDNLALDRK
AAVETGQKLMDAGIMHHVTHSEPFSDAYFFYRFQEDDDGNVLNMKRIWDS
NIPTRHAVVVAKDLLTRLAFLCEEHRRRILEADASSDKIQTPKSAHMILA
SQPVTPLLDPTTRSDPAESISSPSLFRSLSTPRLPSSGSPMLFSPSLQRR
ASQPRPPKQKDDDVDYSSLAKSEQFRKYSLAAAELQHVQLVALNQDERIA
FFVNVYNALCLHAHVVHGHPNSVFRRYVFFRVLSYRVAGLDMSLDDIEHG
ILRGNKKPPMLKFIQQLRPSDPKCQHVLTNRDGRIHFVISAGTKSDPPIR
ILDGENVQEELDDASVEFLSCSVKVDLEKRIVTLPRIFYWYSDDFPSPER
KLLLWIVSFLQVETSHQLVNILNDDGPLPTLMYADFDWSNPEARFNASVV
RRKRRRLERERDLDDGQQDAIDLSFQMPIGGISSILPAQSVSNEDLFKNN
IAYLPSTLPANGQNEAQQAQAIHNSIAIAGARSEEDSSKRLTPETMNVRT
QPETPSARGNENASSANTAAAGAAAAATTAAAAATT*

mRNA from alignment at NODE_566_length_21798_cov_4.589994:28..1938+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1454.t1 ID=Gcaud1454.t1|Name=Gcaud1454.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1911bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:28..1938+ (Gracilaria caudata M_176_S67 male)
ATGTATCCCAAGACGGGGCGCAAGCGAAAGGCACTGGAGCAGGTAGTGCC
TGGTGTCGTTCCTGACCGCAGTTCTCAGTTTGCTGTGTACTCCCAGTCCT
CTGCCGCGGCTGCTTCGAACCCCTTCGAGAACGAGCATTACCCCATCCCA
GACTTCCAACGAGTCTATACCCAAATGCGTGATCCAAAGAATGGCCTGCC
ACTGGCAGACCGTCGCTGGAGACTCAGCACGTACTCCAAGTGCTTCATTG
GCGAAGAAGCCGTGCAATGGATGGTTGACAACCTTGCTCTAGATCGAAAG
GCTGCAGTAGAAACCGGACAAAAGCTTATGGACGCTGGAATCATGCACCA
TGTTACCCATTCAGAACCGTTTTCCGACGCCTACTTTTTCTACCGCTTTC
AAGAAGATGACGATGGAAATGTTCTAAATATGAAGCGAATCTGGGATTCT
AATATACCAACTCGACACGCTGTCGTCGTTGCCAAAGATCTTCTTACGCG
TTTGGCTTTCCTATGCGAAGAACATCGTCGACGAATTCTCGAAGCGGACG
CCAGTTCTGACAAAATTCAGACACCCAAGTCCGCCCACATGATCCTTGCC
TCTCAGCCTGTAACCCCTCTTTTAGATCCCACCACTCGCAGTGACCCTGC
AGAGTCAATATCCTCGCCCAGCTTATTTCGATCGTTATCAACTCCACGCT
TACCTTCCTCAGGATCTCCCATGTTATTCTCACCTTCCCTACAAAGACGT
GCATCTCAACCAAGACCCCCGAAGCAAAAGGACGATGACGTTGACTACTC
ATCTCTGGCCAAGAGCGAACAATTCCGAAAGTATTCTTTGGCTGCAGCGG
AATTGCAGCACGTTCAACTTGTTGCACTTAATCAAGACGAAAGAATTGCG
TTTTTCGTGAATGTGTACAATGCACTATGTCTCCATGCGCACGTTGTCCA
CGGACATCCGAACAGTGTGTTTCGTCGCTATGTCTTTTTCCGCGTGCTGT
CGTATAGGGTGGCTGGATTAGACATGTCTCTGGATGACATTGAACATGGT
ATACTGAGGGGGAATAAGAAACCTCCTATGTTGAAGTTTATCCAGCAGCT
AAGACCTTCGGACCCTAAATGTCAACATGTGCTTACAAATCGAGACGGTC
GCATTCATTTTGTCATCTCTGCTGGTACAAAGTCTGATCCGCCTATTCGT
ATCCTTGACGGAGAAAATGTGCAAGAAGAGCTCGATGACGCGTCCGTTGA
GTTTCTGAGTTGCTCGGTTAAGGTCGACCTTGAGAAGAGAATTGTTACCC
TTCCACGCATCTTTTATTGGTACTCTGACGATTTTCCTAGTCCAGAAAGG
AAACTTTTGCTGTGGATAGTGTCTTTTCTTCAAGTTGAGACATCTCACCA
GCTTGTTAACATACTTAATGATGATGGCCCGTTACCTACATTGATGTATG
CGGATTTTGACTGGTCAAACCCGGAAGCAAGATTCAACGCTTCTGTAGTA
CGAAGAAAGCGGCGAAGGCTGGAGAGGGAAAGGGACCTCGACGACGGGCA
GCAAGATGCCATTGACCTTAGCTTTCAAATGCCAATTGGGGGTATATCTT
CCATACTCCCTGCACAGTCTGTCAGCAACGAGGACTTGTTTAAGAATAAC
ATTGCTTACTTACCATCTACACTTCCAGCAAATGGACAGAATGAAGCTCA
GCAAGCACAGGCTATTCACAACAGCATTGCAATCGCGGGAGCTAGATCTG
AGGAAGATTCATCTAAAAGGTTGACTCCGGAAACTATGAACGTCAGAACT
CAACCAGAGACTCCAAGCGCCAGAGGTAATGAAAACgcgtccagcgcaaa
cacagcggcggctggtgcggctgccgctgcgactactgctgctgctgctg
ctactacataa

Coding sequence (CDS) from alignment at NODE_566_length_21798_cov_4.589994:28..1938+

>Gcaud1454.t1 ID=Gcaud1454.t1|Name=Gcaud1454.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1911bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:28..1938+ (Gracilaria caudata M_176_S67 male)
ATGTATCCCAAGACGGGGCGCAAGCGAAAGGCACTGGAGCAGGTAGTGCC
TGGTGTCGTTCCTGACCGCAGTTCTCAGTTTGCTGTGTACTCCCAGTCCT
CTGCCGCGGCTGCTTCGAACCCCTTCGAGAACGAGCATTACCCCATCCCA
GACTTCCAACGAGTCTATACCCAAATGCGTGATCCAAAGAATGGCCTGCC
ACTGGCAGACCGTCGCTGGAGACTCAGCACGTACTCCAAGTGCTTCATTG
GCGAAGAAGCCGTGCAATGGATGGTTGACAACCTTGCTCTAGATCGAAAG
GCTGCAGTAGAAACCGGACAAAAGCTTATGGACGCTGGAATCATGCACCA
TGTTACCCATTCAGAACCGTTTTCCGACGCCTACTTTTTCTACCGCTTTC
AAGAAGATGACGATGGAAATGTTCTAAATATGAAGCGAATCTGGGATTCT
AATATACCAACTCGACACGCTGTCGTCGTTGCCAAAGATCTTCTTACGCG
TTTGGCTTTCCTATGCGAAGAACATCGTCGACGAATTCTCGAAGCGGACG
CCAGTTCTGACAAAATTCAGACACCCAAGTCCGCCCACATGATCCTTGCC
TCTCAGCCTGTAACCCCTCTTTTAGATCCCACCACTCGCAGTGACCCTGC
AGAGTCAATATCCTCGCCCAGCTTATTTCGATCGTTATCAACTCCACGCT
TACCTTCCTCAGGATCTCCCATGTTATTCTCACCTTCCCTACAAAGACGT
GCATCTCAACCAAGACCCCCGAAGCAAAAGGACGATGACGTTGACTACTC
ATCTCTGGCCAAGAGCGAACAATTCCGAAAGTATTCTTTGGCTGCAGCGG
AATTGCAGCACGTTCAACTTGTTGCACTTAATCAAGACGAAAGAATTGCG
TTTTTCGTGAATGTGTACAATGCACTATGTCTCCATGCGCACGTTGTCCA
CGGACATCCGAACAGTGTGTTTCGTCGCTATGTCTTTTTCCGCGTGCTGT
CGTATAGGGTGGCTGGATTAGACATGTCTCTGGATGACATTGAACATGGT
ATACTGAGGGGGAATAAGAAACCTCCTATGTTGAAGTTTATCCAGCAGCT
AAGACCTTCGGACCCTAAATGTCAACATGTGCTTACAAATCGAGACGGTC
GCATTCATTTTGTCATCTCTGCTGGTACAAAGTCTGATCCGCCTATTCGT
ATCCTTGACGGAGAAAATGTGCAAGAAGAGCTCGATGACGCGTCCGTTGA
GTTTCTGAGTTGCTCGGTTAAGGTCGACCTTGAGAAGAGAATTGTTACCC
TTCCACGCATCTTTTATTGGTACTCTGACGATTTTCCTAGTCCAGAAAGG
AAACTTTTGCTGTGGATAGTGTCTTTTCTTCAAGTTGAGACATCTCACCA
GCTTGTTAACATACTTAATGATGATGGCCCGTTACCTACATTGATGTATG
CGGATTTTGACTGGTCAAACCCGGAAGCAAGATTCAACGCTTCTGTAGTA
CGAAGAAAGCGGCGAAGGCTGGAGAGGGAAAGGGACCTCGACGACGGGCA
GCAAGATGCCATTGACCTTAGCTTTCAAATGCCAATTGGGGGTATATCTT
CCATACTCCCTGCACAGTCTGTCAGCAACGAGGACTTGTTTAAGAATAAC
ATTGCTTACTTACCATCTACACTTCCAGCAAATGGACAGAATGAAGCTCA
GCAAGCACAGGCTATTCACAACAGCATTGCAATCGCGGGAGCTAGATCTG
AGGAAGATTCATCTAAAAGGTTGACTCCGGAAACTATGAACGTCAGAACT
CAACCAGAGACTCCAAGCGCCAGAGGTAATGAAAACgcgtccagcgcaaa
cacagcggcggctggtgcggctgccgctgcgactactgctgctgctgctg
ctactacataa