Gcaud1452.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1452.t1
Unique Name	Gcaud1452.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	267

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1295_length_11728_cov_4.118158	contig	NODE_1295_length_11728_cov_4.118158:6981..7781 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708044.1
PFAMs	Glyco_transf_8,Mannosyl_trans3
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00005,RC00171
KEGG ko	ko:K00750
KEGG Reaction	R00292,R03681
KEGG Pathway	ko00500,ko01100,map00500,map01100
GOs	GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0008194,GO:0008466,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0035251,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046527,GO:0055114,GO:0071704,GO:1901576
Evalue	0.000536
EggNOG OGs	COG5597@1\|root,KOG1950@2759\|Eukaryota
EC	2.4.1.186
Description	glycogenin glucosyltransferase activity
COG category	M
CAZy	GT8
BRITE	ko00000,ko00001,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1452	Gcaud1452	Gracilaria caudata M_176_S67 male	gene	NODE_1295_length_11728_cov_4.118158 6981..7781 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1452.t1.start1	Gcaud1452.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1295_length_11728_cov_4.118158 6981..6983 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1452.t1.CDS1	Gcaud1452.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1295_length_11728_cov_4.118158 6981..7781 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1452.t1.exon1	Gcaud1452.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1295_length_11728_cov_4.118158 6981..7781 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1452.t1.stop1	Gcaud1452.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1295_length_11728_cov_4.118158 7779..7781 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1452.t1	Gcaud1452.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1295_length_11728_cov_4.118158 6981..7781 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1295_length_11728_cov_4.118158:6981..7781+
coding sequence from alignment at NODE_1295_length_11728_cov_4.118158:6981..7781+

mRNA sequence

>Gcaud1452.t1 ID=Gcaud1452.t1|Name=Gcaud1452.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=267bp
MRFPPAITTPHYLFYQRMRWELPSEHCGLQTIIDFSTPAFTRPTNIITLV
LLRLNRHWYQYRSQLQHVATESVFSEALLLFIFLSVIVALYVTSVRLPSP
SPKHRRALSVIPYLPHDLLIFYWLGASFVFNAVCWLLSVHVCQLCASLSV
AVAVLLVTKIMCSSVAYAALGSVFMRFATPDDAHSAAMTTTQRASVTTLL
LNVLESIAVTALVYIANVLPAETGFRRLLWLLVCIAIYFVFWLYVMIVLF
WSWLAAGAWSFKLDKV*

spliced messenger RNA

>Gcaud1452.t1 ID=Gcaud1452.t1|Name=Gcaud1452.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=801bp|location=Sequence derived from alignment at NODE_1295_length_11728_cov_4.118158:6981..7781+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
atgcgcttcccgcccgccATCACCACTCCGCATTACCTCTTCTATCAGAG
AATGCGCTGGGAACTGCCTTCGGAGCACTGCGGCTTGCAGACCATCATCG
ACTTTTCCACCCCAGCTTTCACCCGACCGACCAACATTATCACCTTGGTG
TTGTTGCGTCTCAATCGCCACTGGTATCAGTATCGATCGCAGCTACAGCA
CGTTGCCACCGAGAGCGTCTTCAGCGAGGCGCTGCTGCTGTTCATCTTTC
TGTCCGTGATCGTCGCTCTCTACGTCACCTCTGTGCGCCTACCGTCGCCC
TCCCCGAAGCATCGACGAGCCCTCAGCGTCATACCCTACCTGCCTCACGA
CCTGTTAATATTCTACTGGCTTGGTGCGTCGTTCGTGTTCAATGCTGTTT
GTTGGCTGCTGTCCGTGCACGTATGTCAGCTGTGCGCGTCTCTCTCTGTT
GCCGTCGCGGTGCTGCTTGTCACCAAGATCATGTGCTCCTCTGTTGCCTA
CGCCGCACTGGGCTCTGTGTTCATGCGCTTTGCTACGCCAGACGATGCTC
ACTCTGCGGCCATGACCACCACGCAACGCGCTTCCGTCACCACGCTGTTG
CTCAATGTGTTGGAGTCAATTGCTGTCACTGCGCTGGTGTATATCGCCAA
TGTGCTGCCGGCCGAGACTGGCTTCCGAAGATTGCTGTGGCTGCTTGTGT
GCATAGCCATCTATTTTGTGTTTTGGTTGTATGTCATGATTGTACTGTTT
TGGAGCTGGTTGGCTGCCGGCGCTTGGAGTTTCAAACTAGACAAGGTGTA
A

protein sequence of Gcaud1452.t1

>Gcaud1452.t1 ID=Gcaud1452.t1|Name=Gcaud1452.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=267bp
MRFPPAITTPHYLFYQRMRWELPSEHCGLQTIIDFSTPAFTRPTNIITLV
LLRLNRHWYQYRSQLQHVATESVFSEALLLFIFLSVIVALYVTSVRLPSP
SPKHRRALSVIPYLPHDLLIFYWLGASFVFNAVCWLLSVHVCQLCASLSV
AVAVLLVTKIMCSSVAYAALGSVFMRFATPDDAHSAAMTTTQRASVTTLL
LNVLESIAVTALVYIANVLPAETGFRRLLWLLVCIAIYFVFWLYVMIVLF
WSWLAAGAWSFKLDKV*

mRNA from alignment at NODE_1295_length_11728_cov_4.118158:6981..7781+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1452.t1 ID=Gcaud1452.t1|Name=Gcaud1452.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=801bp|location=Sequence derived from alignment at NODE_1295_length_11728_cov_4.118158:6981..7781+ (Gracilaria caudata M_176_S67 male)
atgcgcttcccgcccgccATCACCACTCCGCATTACCTCTTCTATCAGAG
AATGCGCTGGGAACTGCCTTCGGAGCACTGCGGCTTGCAGACCATCATCG
ACTTTTCCACCCCAGCTTTCACCCGACCGACCAACATTATCACCTTGGTG
TTGTTGCGTCTCAATCGCCACTGGTATCAGTATCGATCGCAGCTACAGCA
CGTTGCCACCGAGAGCGTCTTCAGCGAGGCGCTGCTGCTGTTCATCTTTC
TGTCCGTGATCGTCGCTCTCTACGTCACCTCTGTGCGCCTACCGTCGCCC
TCCCCGAAGCATCGACGAGCCCTCAGCGTCATACCCTACCTGCCTCACGA
CCTGTTAATATTCTACTGGCTTGGTGCGTCGTTCGTGTTCAATGCTGTTT
GTTGGCTGCTGTCCGTGCACGTATGTCAGCTGTGCGCGTCTCTCTCTGTT
GCCGTCGCGGTGCTGCTTGTCACCAAGATCATGTGCTCCTCTGTTGCCTA
CGCCGCACTGGGCTCTGTGTTCATGCGCTTTGCTACGCCAGACGATGCTC
ACTCTGCGGCCATGACCACCACGCAACGCGCTTCCGTCACCACGCTGTTG
CTCAATGTGTTGGAGTCAATTGCTGTCACTGCGCTGGTGTATATCGCCAA
TGTGCTGCCGGCCGAGACTGGCTTCCGAAGATTGCTGTGGCTGCTTGTGT
GCATAGCCATCTATTTTGTGTTTTGGTTGTATGTCATGATTGTACTGTTT
TGGAGCTGGTTGGCTGCCGGCGCTTGGAGTTTCAAACTAGACAAGGTGTA
A

Coding sequence (CDS) from alignment at NODE_1295_length_11728_cov_4.118158:6981..7781+

>Gcaud1452.t1 ID=Gcaud1452.t1|Name=Gcaud1452.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=801bp|location=Sequence derived from alignment at NODE_1295_length_11728_cov_4.118158:6981..7781+ (Gracilaria caudata M_176_S67 male)
atgcgcttcccgcccgccATCACCACTCCGCATTACCTCTTCTATCAGAG
AATGCGCTGGGAACTGCCTTCGGAGCACTGCGGCTTGCAGACCATCATCG
ACTTTTCCACCCCAGCTTTCACCCGACCGACCAACATTATCACCTTGGTG
TTGTTGCGTCTCAATCGCCACTGGTATCAGTATCGATCGCAGCTACAGCA
CGTTGCCACCGAGAGCGTCTTCAGCGAGGCGCTGCTGCTGTTCATCTTTC
TGTCCGTGATCGTCGCTCTCTACGTCACCTCTGTGCGCCTACCGTCGCCC
TCCCCGAAGCATCGACGAGCCCTCAGCGTCATACCCTACCTGCCTCACGA
CCTGTTAATATTCTACTGGCTTGGTGCGTCGTTCGTGTTCAATGCTGTTT
GTTGGCTGCTGTCCGTGCACGTATGTCAGCTGTGCGCGTCTCTCTCTGTT
GCCGTCGCGGTGCTGCTTGTCACCAAGATCATGTGCTCCTCTGTTGCCTA
CGCCGCACTGGGCTCTGTGTTCATGCGCTTTGCTACGCCAGACGATGCTC
ACTCTGCGGCCATGACCACCACGCAACGCGCTTCCGTCACCACGCTGTTG
CTCAATGTGTTGGAGTCAATTGCTGTCACTGCGCTGGTGTATATCGCCAA
TGTGCTGCCGGCCGAGACTGGCTTCCGAAGATTGCTGTGGCTGCTTGTGT
GCATAGCCATCTATTTTGTGTTTTGGTTGTATGTCATGATTGTACTGTTT
TGGAGCTGGTTGGCTGCCGGCGCTTGGAGTTTCAAACTAGACAAGGTGTA
A